keyword
https://read.qxmd.com/read/38630508/prediction-under-interventions-evaluation-of-counterfactual-performance-using-longitudinal-observational-data
#21
JOURNAL ARTICLE
Ruth H Keogh, Nan Van Geloven
Predictions under interventions are estimates of what a person's risk of an outcome would be if they were to follow a particular treatment strategy, given their individual characteristics. Such predictions can give important input to medical decision-making. However, evaluating the predictive performance of interventional predictions is challenging. Standard ways of evaluating predictive performance do not apply when using observational data, because prediction under interventions involves obtaining predictions of the outcome under conditions that are different from those that are observed for a subset of individuals in the validation dataset...
May 1, 2024: Epidemiology
https://read.qxmd.com/read/38629790/t-wave-inversion-through-inhomogeneous-voltage-diffusion-within-the-fk3v-cardiac-model
#22
JOURNAL ARTICLE
E Angelaki, N Lazarides, G D Barmparis, Ioannis Kourakis, Maria E Marketou, G P Tsironis
The heart beats are due to the synchronized contraction of cardiomyocytes triggered by a periodic sequence of electrical signals called action potentials, which originate in the sinoatrial node and spread through the heart's electrical system. A large body of work is devoted to modeling the propagation of the action potential and to reproducing reliably its shape and duration. Connection of computational modeling of cells to macroscopic phenomenological curves such as the electrocardiogram has been also intense, due to its clinical importance in analyzing cardiovascular diseases...
April 1, 2024: Chaos
https://read.qxmd.com/read/38629736/a-new-biomechanical-deformation-response-parameter-change-in-central-corneal-thickness-during-air-puff-induced-corneal-deformation
#23
JOURNAL ARTICLE
Monica D Okon, Yanhui Ma, B Audrey Nguyen-Rudy, Cynthia J Roberts
PURPOSE: To investigate the percent change in central corneal thickness (%ΔCCT) during air-puff-induced deformation as an indicator of corneal biomechanical response. METHODS: Forty ex vivo human eyes from forty donors were imaged using the CorVis ST at experimentally controlled intraocular pressure (IOP) of 10, 20, 30, and 40 mmHg, followed by uniaxial strip testing to calculate tensile modulus. The CorVis ST research software tracked the anterior and posterior cornea edges and determined the dynamic corneal response (DCR) parameters...
April 17, 2024: Current Eye Research
https://read.qxmd.com/read/38629509/fitting-individual-based-models-of-spatial-population-dynamics-to-long-term-monitoring-data
#24
JOURNAL ARTICLE
Anne-Kathleen Malchow, Guillermo Fandos, Urs G Kormann, Martin U Grüebler, Marc Kéry, Florian Hartig, Damaris Zurell
Generating spatial predictions of species distribution is a central task for research and policy. Currently, correlative species distribution models (cSDMs) are among the most widely used tools for this purpose. However, a fundamental assumption of cSDMs, that species distributions are in equilibrium with their environment, is rarely fulfilled in real data and limits the applicability of cSDMs for dynamic projections. Process-based, dynamic SDMs (dSDMs) promise to overcome these limitations as they explicitly represent transient dynamics and enhance spatiotemporal transferability...
April 17, 2024: Ecological Applications
https://read.qxmd.com/read/38628437/estimating-3d-kinematics-and-kinetics-from-virtual-inertial-sensor-data-through-musculoskeletal-movement-simulations
#25
JOURNAL ARTICLE
Marlies Nitschke, Eva Dorschky, Sigrid Leyendecker, Bjoern M Eskofier, Anne D Koelewijn
Portable measurement systems using inertial sensors enable motion capture outside the lab, facilitating longitudinal and large-scale studies in natural environments. However, estimating 3D kinematics and kinetics from inertial data for a comprehensive biomechanical movement analysis is still challenging. Machine learning models or stepwise approaches performing Kalman filtering, inverse kinematics, and inverse dynamics can lead to inconsistencies between kinematics and kinetics. We investigated the reconstruction of 3D kinematics and kinetics of arbitrary running motions from inertial sensor data using optimal control simulations of full-body musculoskeletal models...
2024: Frontiers in Bioengineering and Biotechnology
https://read.qxmd.com/read/38627952/genome-wide-methylation-landscape-during-somatic-embryogenesis-in-medicago-truncatula-reveals-correlation-between-tnt1-retrotransposition-and-hyperactive-methylation-regions
#26
JOURNAL ARTICLE
Raja Sekhar Nandety, Sunhee Oh, Hee-Kyung Lee, Nick Krom, Rajeev Gupta, Kirankumar S Mysore
Medicago truncatula is a model legume for fundamental research on legume biology and symbiotic nitrogen fixation. Tnt1, a retrotransposon from tobacco, was used to generate insertion mutants in M. truncatula R108. Approximately 21 000 insertion lines have been generated and publicly available. Tnt1 retro-transposition event occurs during somatic embryogenesis (SE), a pivotal process that triggers massive methylation changes. We studied the SE of M. truncatula R108 using leaf explants and explored the dynamic shifts in the methylation landscape from leaf explants to callus formation and finally embryogenesis...
April 16, 2024: Plant Journal
https://read.qxmd.com/read/38626685/occurrence-and-spatiotemporal-distribution-of-natural-and-synthetic-steroid-hormones-in-soil-water-and-sediment-systems-in-suburban-agricultural-area-of-guangzhou-city-china
#27
JOURNAL ARTICLE
Hang Lin, Liangzhuo Zhou, Shudong Lu, Han Yang, Yongtao Li, Xingjian Yang
Steroid hormones are highly potent compounds that can disrupt the endocrine systems of aquatic organisms. This study explored the spatiotemporal distribution of 49 steroid hormones in agricultural soils, ditch water, and sediment from suburban areas of Guangzhou City, China. The average concentrations of Σsteroid hormones in the water, soils, and sediment were 97.7 ng/L, 4460 ng/kg, and 9140 ng/kg, respectively. Elevated hormone concentrations were notable in water during the flood season compared to the dry season, whereas an inverse trend was observed in soils and sediment...
April 15, 2024: Journal of Hazardous Materials
https://read.qxmd.com/read/38626121/estimating-the-mechanical-cost-of-transport-in-human-walking-with-a-simple-kinematic-data-driven-mechanical-model
#28
JOURNAL ARTICLE
Parvat Katwal, Suraj Jaiswal, Dezhi Jiang, Lauri Pyrhönen, Jenni Tuomisto, Timo Rantalainen, Arend L Schwab, Aki Mikkola
This work utilizes a simplified, streamlined approach to study the mechanical cost of transport in human walking. Utilizing the kinematic motion data of the center of mass, velocities and accelerations are determined using kinematic analysis; the applied force is then obtained using inverse dynamics. We calculate the mechanical cost of transport per step from both synthetic and measured data, using a very simple mechanical model of walking. The approach studied can serve as an informative gait characteristic to monitor rehabilitation in human walking...
2024: PloS One
https://read.qxmd.com/read/38623745/solvation-dynamics-on-the-diffusion-timescale-elucidated-using-energy-represented-dynamics-theory
#29
JOURNAL ARTICLE
Kazuya Okita, Natsuumi Ito, Nozomi Morishita-Watanabe, Hiroshi Umakoshi, Kento Kasahara, Nobuyuki Matubayasi
Photoexcitation of a solute alters the solute-solvent interaction, resulting in the nonequilibrium relaxation of the solvation structure, often called a dynamic Stokes shift or solvation dynamics. Thanks to the local nature of the solute-solvent interaction, the characteristics of the local solvent environment dissolving the solute can be captured by the observation of this process. Recently, we derived the energy-represented Smoluchowski-Vlasov (ERSV) equation, a diffusion equation for molecular liquids, which can be used to analyze the solvation dynamics on the diffusion timescale...
April 16, 2024: Physical Chemistry Chemical Physics: PCCP
https://read.qxmd.com/read/38621070/tunable-liquid-crystal-lens-with-symmetric-bipolar-operation
#30
JOURNAL ARTICLE
Zhanna Zemska, Tigran Galstian
We describe an electrically tunable liquid crystal lens that can dynamically generate symmetric wavefront profiles. The curvature of these profiles may be inversed, enabling a bipolar response (focusing and defocusing). Different wavefronts, including non-monotonic, are predicted theoretically and demonstrated experimentally. The optical performance of the devices is characterized experimentally in an imaging scheme.
April 15, 2024: Optics Letters
https://read.qxmd.com/read/38619249/the-application-of-the-inverse-problem-method-for-constructing-confining-potentials-that-make-n-soliton-waveforms-exact-solutions-in-the-gross-pitaevskii-equation
#31
JOURNAL ARTICLE
Fred Cooper, Avinash Khare, John F Dawson, Efstathios G Charalampidis, Avadh Saxena
In this work, we discuss an application of the "inverse problem" method to find the external trapping potential, which has particular N trapped soliton-like solutions of the Gross-Pitaevskii equation (GPE) also known as the cubic nonlinear Schrödinger equation (NLSE). This inverse method assumes particular forms for the trapped soliton wave function, which then determines the (unique) external (confining) potential. The latter renders these assumed waveforms exact solutions of the GPE (NLSE) for both attractive (g<0) and repulsive (g>0) self-interactions...
April 1, 2024: Chaos
https://read.qxmd.com/read/38617223/dynamic-tracking-of-native-polyclonal-hematopoiesis-in-adult-mice
#32
Suying Liu, Sarah E Adams, Haotian Zheng, Juliana Ehnot, Seul K Jung, Greer Jeffrey, Theresa Menna, Louise E Purton, Hongzhe Lee, Peter Kurre
Hematopoietic dysfunction has been associated with a reduction in the number of active precursors. However, precursor quantification at homeostasis and under diseased conditions is constrained by the scarcity of available methods. To address this issue, we optimized a method for quantifying a wide range of hematopoietic precursors. Assuming the random induction of a stable label in precursors following a binomial distribution, the estimation depends on the inverse correlation between precursor numbers and the variance of precursor labeling among independent samples...
April 3, 2024: bioRxiv
https://read.qxmd.com/read/38617153/hemodynamic-property-incorporated-brain-tumor-segmentation-by-deep-learning-and-density-based-analysis-of-dynamic-susceptibility-contrast-enhanced-magnetic-resonance-imaging-mri
#33
JOURNAL ARTICLE
Leonardo Tang, Tianhe Wu, Ranliang Hu, Quanquan Gu, Xiaofeng Yang, Hui Mao
BACKGROUND: Magnetic resonance imaging (MRI) is a primary non-invasive imaging modality for tumor segmentation, leveraging its exceptional soft tissue contrast and high resolution. Current segmentation methods typically focus on structural MRI, such as T1 -weighted post-contrast-enhanced or fluid-attenuated inversion recovery (FLAIR) sequences. However, these methods overlook the blood perfusion and hemodynamic properties of tumors, readily derived from dynamic susceptibility contrast (DSC) enhanced MRI...
April 3, 2024: Quantitative Imaging in Medicine and Surgery
https://read.qxmd.com/read/38613287/lossless-spin-orbit-torque-in-antiferromagnetic-topological-insulator-mnbi_-2-te_-4
#34
JOURNAL ARTICLE
Junyu Tang, Ran Cheng
We formulate and quantify the spin-orbit torque (SOT) in intrinsic antiferromagnetic topological insulator MnBi_{2}Te_{4} of a few septuple-layer thick in charge-neutral condition, which exhibits pronounced layer-resolved characteristics and even-odd contrast. Contrary to traditional current-induced torques, our SOT is not accompanied by Ohm's currents, thus being devoid of Joule heating. We study the SOT-induced magnetic resonances, where in the tri-septuple-layer case we identify a peculiar exchange mode that is blind to microwaves but can be exclusively driven by the predicted SOT...
March 29, 2024: Physical Review Letters
https://read.qxmd.com/read/38613282/bi-solitons-on-the-surface-of-a-deep-fluid-an-inverse-scattering-transform-perspective-based-on-perturbation-theory
#35
JOURNAL ARTICLE
Andrey Gelash, Sergey Dremov, Rustam Mullyadzhanov, Dmitry Kachulin
We investigate theoretically and numerically the dynamics of long-living oscillating coherent structures-bi-solitons-in the exact and approximate models for waves on the free surface of deep water. We generate numerically the bi-solitons of the approximate Dyachenko-Zakharov equation and fully nonlinear equations propagating without significant loss of energy for hundreds of the structure oscillation periods, which is hundreds of thousands of characteristic periods of the surface waves. To elucidate the long-living bi-soliton complex nature we apply an analytical-numerical approach based on the perturbation theory and the inverse scattering transform (IST) for the one-dimensional focusing nonlinear Schrödinger equation model...
March 29, 2024: Physical Review Letters
https://read.qxmd.com/read/38612976/the-human-gut-and-dietary-salt-the-bacteroides-prevotella-ratio-as-a-potential-marker-of-sodium-intake-and-beyond
#36
JOURNAL ARTICLE
Omololu Fagunwa, Kirsty Davies, Jane Bradbury
The gut microbiota is a dynamic ecosystem that plays a pivotal role in maintaining host health. The perturbation of these microbes has been linked to several health conditions. Hence, they have emerged as promising targets for understanding and promoting good health. Despite the growing body of research on the role of sodium in health, its effects on the human gut microbiome remain under-explored. Here, using nutrition and metagenomics methods, we investigate the influence of dietary sodium intake and alterations of the human gut microbiota...
March 25, 2024: Nutrients
https://read.qxmd.com/read/38612537/constitutive-nos-production-is-modulated-by-alzheimer-s-disease-pathology-depending-on-apoe-genotype
#37
JOURNAL ARTICLE
Chiara Giuseppina Bonomi, Alessandro Martorana, Denise Fiorelli, Marzia Nuccetelli, Fabio Placidi, Nicola Biagio Mercuri, Caterina Motta
Both the endothelial (eNOS) and the neuronal (nNOS) isoforms of constitutive Nitric Oxide Synthase have been implicated in vascular dysfunctions in Alzheimer's disease (AD). We aimed to explore the relationship between amyloid pathology and NO dynamics by comparing the cerebrospinal fluid (CSF) levels of nNOS and eNOS of 8 healthy controls (HC) and 27 patients with a clinical diagnosis of Alzheimer's disease and isolated CSF amyloid changes, stratified according to APOE ε genotype (APOE ε3 = 13, APOE ε4 = 14)...
March 27, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38611998/the-properties-of-high-performance-concrete-with-manganese-slag-under-salt-action
#38
JOURNAL ARTICLE
Junchao Yang, Hui Wang, Ling Peng, Fei Zhao
Manganese slag (MS) containing a certain amount of active hydration substances may be used as a kind of cementitious material. In the present study, we measured the mass, the relative dynamic modulus of elasticity (RDME), and the flexural and compressive strengths of MS high-performance concrete (MS-HPC) with added basalt fibers exposed to NaCl freeze-thaw cycles (N-FCs), NaCl dry-wet alternations (N-DAs), and Na2 SO4 dry-wet alternations (NS-DAs). Scanning electron microscope energy-dispersive spectrometer (SEM-EDS) spectra, thermogravimetric analysis (TG) curves, and X-ray diffraction spectroscopy (XRD) curves were obtained...
March 25, 2024: Materials
https://read.qxmd.com/read/38611535/uav-and-satellite-synergies-for-mapping-grassland-aboveground-biomass-in-hulunbuir-meadow-steppe
#39
JOURNAL ARTICLE
Xiaohua Zhu, Xinyu Chen, Lingling Ma, Wei Liu
Aboveground biomass (AGB) is an important indicator of the grassland ecosystem. It can be used to evaluate the grassland productivity and carbon stock. Satellite remote sensing technology is useful for monitoring the dynamic changes in AGB across a wide range of grasslands. However, due to the scale mismatch between satellite observations and ground surveys, significant uncertainties and biases exist in mapping grassland AGB from satellite data. This is also a common problem in low- and medium-resolution satellite remote sensing modeling that has not been effectively solved...
March 31, 2024: Plants (Basel, Switzerland)
https://read.qxmd.com/read/38610237/multispectral-thermometry-method-based-on-optimisation-ideas
#40
JOURNAL ARTICLE
Xuan Zhang, Bin Liu, Hongru Wang, Wen Ma, Yan Han
Multispectral thermometry is based on the law of blackbody radiation and is widely used in engineering practice today. Temperature values can be inferred from radiation intensity and multiple sets of wavelengths. Multispectral thermometry eliminates the requirements for single-spectral and spectral similarity, which are associated with two-colour thermometry. In the process of multispectral temperature inversion, the solution of spectral emissivity and multispectral data processing can be seen as the keys to accurate thermometry...
March 22, 2024: Sensors
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