keyword
https://read.qxmd.com/read/37918467/drg2-in-macrophages-is-crucial-for-initial-inflammatory-response-and-protection-against-listeria-monocytogenes-infection
#1
JOURNAL ARTICLE
Unn Hwa Lee, Sang Jin Park, Seong A Ju, Sang Chul Lee, Byung Sam Kim, Byungyong Ahn, Jawoon Yi, Jihwan Park, Young-Wook Won, In Seob Han, Byung Ju Lee, Wha Ja Cho, Jeong Woo Park
Innate immune response is critical for the control of Listeria monocytogenes infection. Here, we identified developmentally regulated GTP-binding protein 2 (DRG2) in macrophages as a major regulator of the innate immune response against L. monocytogenes infection. Both whole-body DRG2 knockout (KO) mice and macrophage-specific DRG2 KO mice had low levels of IL-6 during early infection and increased susceptibility to L. monocytogenes infection. Following an initial impaired inflammatory response of macrophages upon i...
October 31, 2023: Clinical Immunology: the Official Journal of the Clinical Immunology Society
https://read.qxmd.com/read/36159780/large-scale-bulk-rna-seq-analysis-defines-immune-evasion-mechanism-related-to-mast-cell-in-gliomas
#2
JOURNAL ARTICLE
Rui Chen, Wantao Wu, Tao Liu, Yihan Zhao, Yifan Wang, Hao Zhang, Zeyu Wang, Ziyu Dai, Xiaoxi Zhou, Peng Luo, Jian Zhang, Zaoqu Liu, Li-Yang Zhang, Quan Cheng
Accumulating evidence has demonstrated that the immune cells have an emerging role in controlling anti-tumor immune responses and tumor progression. The comprehensive role of mast cell in glioma has not been illustrated yet. In this study, 1,991 diffuse glioma samples were collected from The Cancer Genome Atlas (TCGA) and the Chinese Glioma Genome Atlas (CGGA). xCell algorithm was employed to define the mast cell-related genes. Based on mast cell-related genes, gliomas were divided into two clusters with distinct clinical and immunological characteristics...
2022: Frontiers in Immunology
https://read.qxmd.com/read/35813819/dna-damage-response-gene-based-subtypes-associated-with-clinical-outcomes-in-early-stage-lung-adenocarcinoma
#3
JOURNAL ARTICLE
Yang Zhao, Bei Qing, Chunwei Xu, Jing Zhao, Yuchen Liao, Peng Cui, Guoqiang Wang, Shangli Cai, Yong Song, Liming Cao, Jianchun Duan
DNA damage response (DDR) pathways play a crucial role in lung cancer. In this retrospective analysis, we aimed to develop a prognostic model and molecular subtype based on the expression profiles of DDR-related genes in early-stage lung adenocarcinoma (LUAD). A total of 1,785 lung adenocarcinoma samples from one RNA-seq dataset of The Cancer Genome Atlas (TCGA) and six microarray datasets of Gene Expression Omnibus (GEO) were included in the analysis. In the TCGA dataset, a DNA damage response gene (DRG)-based signature consisting of 16 genes was constructed to predict the clinical outcomes of LUAD patients...
2022: Frontiers in Molecular Biosciences
https://read.qxmd.com/read/34900236/ribo-seq-and-rna-seq-of-tma46-dfrp1-and-gir2-dfrp2-knockout-yeast-strains
#4
JOURNAL ARTICLE
Artyom A Egorov, Desislava S Makeeva, Nadezhda E Makarova, Dmitri A Bykov, Yanislav S Hrytseniuk, Olga V Mitkevich, Valery N Urakov, Alexander I Alexandrov, Ivan V Kulakovskiy, Sergey E Dmitriev
In eukaryotes, stalled and collided ribosomes are recognized by several conserved multicomponent systems, which either block protein synthesis in situ and resolve the collision locally, or trigger a general stress response. Yeast ribosome-binding GTPases RBG1 (DRG1 in mammals) and RBG2 (DRG2) form two distinct heterodimers with TMA46 (DFRP1) and GIR2 (DFRP2), respectively, both involved in mRNA translation. Accumulated evidence suggests that the dimers play partially redundant roles in elongation processivity and resolution of ribosome stalling and collision events, as well as in the regulation of GCN1-mediated signaling involved in ribosome-associated quality control (RQC)...
2021: F1000Research
https://read.qxmd.com/read/34777693/drg2-accelerates-senescence-via-negative-regulation-of-sirt1-in-human-diploid-fibroblasts
#5
JOURNAL ARTICLE
Bing Si Li, Ai Lin Jin, ZiQi Zhou, Jae Ho Seo, Byung-Min Choi
Accumulating evidence suggests that developmentally regulated GTP-binding protein 2 (DRG2), an evolutionarily conserved GTP-binding protein, plays an important role in regulating cell growth, inflammation, and mitochondria dynamics. However, the effect of DRG2 in aging remains unclear. In this study, we found that endogenous DRG2 protein expression is upregulated in oxidative stress-induced premature senescence models and tissues of aged mice. Ectopic expression of DRG2 significantly promoted senescence-associated β -galactosidase (SA- β -gal) activity and inhibited cell growth, concomitant with increase in levels of acetyl (ac)-p53 (Lys382), ac-nuclear factor-kB (NF- κ B) p65 (Lys310), p21 Waf1/Cip1 , and p16 Ink4a and a decrease in cyclin D1...
2021: Oxidative Medicine and Cellular Longevity
https://read.qxmd.com/read/34664086/developmentally-regulated-gtpases-structure-function-and-roles-in-disease
#6
REVIEW
Christian A E Westrip, Qinqin Zhuang, Charlotte Hall, Charlotte D Eaton, Mathew L Coleman
GTPases are a large superfamily of evolutionarily conserved proteins involved in a variety of fundamental cellular processes. The developmentally regulated GTP-binding protein (DRG) subfamily of GTPases consists of two highly conserved paralogs, DRG1 and DRG2, both of which have been implicated in the regulation of cell proliferation, translation and microtubules. Furthermore, DRG1 and 2 proteins both have a conserved binding partner, DRG family regulatory protein 1 and 2 (DFRP1 and DFRP2), respectively, that prevents them from being degraded...
October 19, 2021: Cellular and Molecular Life Sciences: CMLS
https://read.qxmd.com/read/34520979/developmentally-regulated-gtp-binding-protein-2-regulates-adipocyte-differentiation
#7
JOURNAL ARTICLE
Byong Seo Park, Hye Li Im, Nal Ae Yoon, Thai Hien Tu, Jeong Woo Park, Jae Geun Kim, Byung Ju Lee
Developmentally regulated GTP-binding protein 2 (DRG2) participates in the regulation of proliferation and differentiation of multiple cells. However, whether DRG2 regulates adipocyte differentiation and related metabolic control remains elusive. This study revealed increases in body weight and adiposity in DRG2 transgenic (Tg) mice overexpressing DRG2. Consistent with these results, DRG2 Tg mice showed increased expression of genes involved in adipogenesis and lipid metabolism in the white adipose tissue. DRG2 was also identified to control adipogenesis by cooperating with peroxisome proliferator activated receptor-γ (PPAR-γ) in cultured adipocytes...
November 12, 2021: Biochemical and Biophysical Research Communications
https://read.qxmd.com/read/34503108/a-genome-wide-profiling-of-glioma-patients-with-an-idh1-mutation-using-the-catalogue-of-somatic-mutations-in-cancer-database
#8
JOURNAL ARTICLE
Amrit L Pappula, Shayaan Rasheed, Golrokh Mirzaei, Ruben C Petreaca, Renee A Bouley
Gliomas are differentiated into two major disease subtypes, astrocytoma or oligodendroglioma, which are then characterized as either IDH (isocitrate dehydrogenase)-wild type or IDH-mutant due to the dramatic differences in prognosis and overall survival. Here, we investigated the genetic background of IDH1-mutant gliomas using the Catalogue of Somatic Mutations in Cancer (COSMIC) database. In astrocytoma patients, we found that IDH1 is often co-mutated with TP53, ATRX, AMBRA1, PREX1, and NOTCH1, but not CHEK2, EGFR, PTEN, or the zinc finger transcription factor ZNF429...
August 26, 2021: Cancers
https://read.qxmd.com/read/34190439/developmentally-regulated-gtp-binding-protein-2-levels-in-prostate-cancer-cell-lines-impact-docetaxel-induced-apoptosis
#9
JOURNAL ARTICLE
Seong Cheol Kim, Won Hyeok Lee, Song Hee Kim, Abdumadjidov Alisher Abdulkhayevich, Jeong Woo Park, Young Min Kim, Kyung Hyun Moon, Sang Hun Lee, Sungchan Park
PURPOSE: This study aimed to confirm the association between developmentally regulated GTP-binding protein 2 (DRG2) expression and docetaxel-induced apoptosis and to determine whether prostate cancer responses to docetaxel treatment differ with DRG2 expression. MATERIALS AND METHODS: PC3, DU145, and LNCaP prostate cancer cell lines were used. The MTT assay was used to determine cell viability. Western blotting analysis was performed using anti-DRG2 antibodies. Cells were transfected with 50 nmol DRG2 siRNA using an siRNA transfection reagent for DRG2 knockdown...
July 2021: Investigative and Clinical Urology
https://read.qxmd.com/read/32328184/integrating-genomic-data-with-transcriptomic-data-for-improved-survival-prediction-for-adult-diffuse-glioma
#10
JOURNAL ARTICLE
Qi Yang, Yi Xiong, Nian Jiang, Fanyuan Zeng, Chunhai Huang, Xuejun Li
Background : Glioma is the most common type of primary central nervous system tumors. However, the relationship between gene mutations and transcriptome is unclear in diffuse glioma, and there are no systemic analyses with regard to the genotype-phenotype association currently. Methods : We performed the multi-omics analysis in large glioblastoma multiforme (GBM, n=126) and low-grade glioma (LGG, n=481) cohorts obtained from The Cancer Genome Atlas (TCGA) database. We used multivariate linear models to evaluate associations between driver gene mutations and global gene expression...
2020: Journal of Cancer
https://read.qxmd.com/read/31861806/drg2-deficient-mice-exhibit-impaired-motor-behaviors-with-reduced-striatal-dopamine-release
#11
JOURNAL ARTICLE
Hye Ryeong Lim, Mai-Tram Vo, Dong Jun Kim, Unn Hwa Lee, Jong Hyuk Yoon, Hyung-Jun Kim, Jeongah Kim, Sang Ryong Kim, Jun Yeon Lee, Chae Ha Yang, Hee Young Kim, June-Seek Choi, Kijeong Kim, Esther Yang, Hyun Kim, Seongsoo Lee, Byung Ju Lee, Kyungjin Kim, Jeong Woo Park, Chang Man Ha
Developmentally regulated GTP-binding protein 2 (DRG2) was first identified in the central nervous system of mice. However, the physiological function of DRG2 in the brain remains largely unknown. Here, we demonstrated that knocking out DRG2 impairs the function of dopamine neurons in mice. DRG2 was strongly expressed in the neurons of the dopaminergic system such as those in the striatum (Str), ventral tegmental area (VTA), and substantia nigra (SN), and on neuronal cell bodies in high-density regions such as the hippocampus (HIP), cerebellum, and cerebral cortex in the mouse brain...
December 20, 2019: International Journal of Molecular Sciences
https://read.qxmd.com/read/31693298/drg2-supports-the-growth-of-primary-tumors-and-metastases-of-melanoma-by-enhancing-vegf-a-expression
#12
JOURNAL ARTICLE
Nal Ae Yoon, Se Jin Jung, Seong Hee Choi, Jin Hyun Ryu, Muralidharan Mani, Unn Hwa Lee, Mai-Tram Vo, Do Yong Jeon, Su Wol Chung, Byung Ju Lee, Young Wha Koh, Soon Eun Park, Yong Joon Shin, Sang Soo Kang, Wha Ja Cho, Hee Jeong Cha, Jeong Woo Park
Malignant metastatic melanoma (MM) is the most lethal of all skin cancers, but detailed mechanisms for regulation of melanoma metastasis are not fully understood. Here, we demonstrated that developmentally regulated GTP-binding protein 2 (DRG2) is required for the growth of primary tumors and for metastasis. DRG2 expression was significantly increased in MM compared with primary melanoma (PM) and dysplastic nevi. A correlation between DRG2 expression and poor disease-specific survival in melanoma patients was also identified...
May 2020: FEBS Journal
https://read.qxmd.com/read/31199931/drg2-knockdown-induces-golgi-fragmentation-via-gsk3%C3%AE-phosphorylation-and-microtubule-stabilization
#13
JOURNAL ARTICLE
Muralidharan Mani, Dang Thi Thao, Beom Chang Kim, Unn Hwa Lee, Dong Jun Kim, Soo Hwa Jang, Sung Hoon Back, Byung Ju Lee, Wha Ja Cho, In-Seob Han, Jeong Woo Park
The perinuclear stacks of the Golgi apparatus maintained by dynamic microtubules are essential for cell migration. Activation of Akt (protein kinase B, PKB) negatively regulates glycogen synthase kinase 3β (GSK3β)-mediated tau phosphorylation, which enhances tau binding to microtubules and microtubule stability. In this study, experiments were performed on developmentally regulated GTP-binding protein 2 (DRG2)-stably knockdown HeLa cells to determine whether knockdown of DRG2 in HeLa cells treated with epidermal growth factor (EGF) affects microtubule dynamics, perinuclear Golgi stacking, and cell migration...
September 2019: Biochimica et Biophysica Acta. Molecular Cell Research
https://read.qxmd.com/read/30453731/drg2-deficiency-causes-impaired-microtubule-dynamics-in-hela-cells
#14
JOURNAL ARTICLE
Thao Dang, Soo Hwa Jang, Sung Hoon Back, Jeong Woo Park, In-Seob Han
The developmentally regulated GTP binding protein 2 (DRG2) is involved in the control of cell growth and differentiation. Here, we demonstrate that DRG2 regulates microtubule dynamics in HeLa cells. Analysis of live imaging of the plus-ends of microtubules with EB1-EGFP showed that DRG2 deficiency (shDRG2) significantly reduced the growth rate of HeLa cells. Depletion of DRG2 increased 'slow and long-lived' subpopulations, but decreased 'fast and short-lived' subpopulations of microtubules. Microtubule polymerization inhibitor exhibited a reduced response in shDRG2 cells...
December 31, 2018: Molecules and Cells
https://read.qxmd.com/read/30295165/developing-hispolon-based-novel-anticancer-therapeutics-against-human-nf-%C3%AE%C2%BA%C3%AE-using-in-silico-approach-of-modelling-docking-and-protein-dynamics
#15
JOURNAL ARTICLE
Manish Paul, Mrunmaya Kumar Panda, Hrudayanath Thatoi
Hispolon is a polyphenolic compound derived from black hoof mushroom (Phellinus linteus) or shaggy bracket mushroom (Inonotus hispidus) which induces the inhibition of cancer promoting NF-κβ complex. To develop more potent lead molecules with enhanced anticancer efficiency, mechanism of hispolon mediated Nuclear Factor-κβ inhibition has been investigated by molecular modelling and docking. Ten derivatives of hispolon (DRG1-10) have been developed by pharmacophore based design with a view to enhance the anticancer efficacy...
October 6, 2018: Journal of Biomolecular Structure & Dynamics
https://read.qxmd.com/read/30281872/functional-intronic-variant-of-slc5a10-affects-drg2-expression-and-survival-outcomes-of-early-stage-non-small-cell-lung-cancer
#16
JOURNAL ARTICLE
Mi Jeong Hong, Seung Soo Yoo, Jin Eun Choi, Hyo-Gyoung Kang, Sook Kyung Do, Jang Hyuck Lee, Won Kee Lee, Jaehee Lee, Shin Yup Lee, Seung Ick Cha, Chang Ho Kim, Eung Bae Lee, Sukki Cho, Sanghoon Jheon, Jae Yong Park
RegulomeDB is a new tool that can predict the regulatory function of genetic variants. We applied RegulomeDB in selecting putative functional variants and evaluated the relationship between these variants and survival outcomes of surgically resected non-small-cell lung cancer. Among the 244 variants studied, 14 were associated with overall survival (P < 0.05) in the discovery cohort and one variant (rs2257609 C>T) was replicated in the validation cohort. In the combined analysis, rs2257609 C>T was significantly associated with worse overall and disease-free survival under a dominant model (P = 2 × 10-5 and P = 0...
October 3, 2018: Cancer Science
https://read.qxmd.com/read/28865956/developmentally-regulated-gtp-binding-protein-2-is-required-for-stabilization-of-rac1-positive-membrane-tubules
#17
JOURNAL ARTICLE
Muralidharan Mani, Unn Hwa Lee, Nal Ae Yoon, Eun Hye Yoon, Byung Ju Lee, Wha Ja Cho, Jeong Woo Park
Previously we have reported that developmentally regulated GTP-binding protein 2 (DRG2) localizes on Rab5 endosomes and plays an important role in transferrin (Tfn) recycling. We here identified DRG2 as a key regulator of membrane tubule stability. At 30 min after Tfn treatment, DRG2 localized to membrane tubules which were enriched with phosphatidylinositol 4-monophosphate [PI(4)P] and did not contain Rab5. DRG2 interacted with Rac1 more strongly with GTP-bound Rac1 and tubular localization of DRG2 depended on Rac1 activity...
November 4, 2017: Biochemical and Biophysical Research Communications
https://read.qxmd.com/read/28413209/duplication-17p11-2-potocki-lupski-syndrome-in-a-child-with-developmental-delay
#18
JOURNAL ARTICLE
S Shuib, N N Saaid, Z Zakaria, J Ismail, Z Abdul Latiff
Potocki-Lupski syndrome (PTLS), also known as duplication 17p11.2 syndrome, trisomy 17p11.2 or dup(17)(p11.2p11.2) syndrome, is a developmental disorder and a rare contiguous gene syndrome affecting 1 in 20,000 live births. Among the key features of such patients are autism spectrum disorder, learning disabilities, developmental delay, attention-deficit disorder, infantile hypotonia and cardiovascular abnormalities. Previous studies using microarray identified variations in the size and extent of the duplicated region of chromosome 17p11...
April 2017: Malaysian Journal of Pathology
https://read.qxmd.com/read/28363867/developmentally-regulated-gtp-binding-protein-2-depletion-leads-to-mitochondrial-dysfunction-through-downregulation-of-dynamin-related-protein-1
#19
JOURNAL ARTICLE
Mai-Tram Vo, Myoung Seok Ko, Unn Hwa Lee, Eun Hye Yoon, Byung Ju Lee, Wha Ja Cho, Chang Man Ha, Kyungjin Kim, Jeong Woo Park
Mitochondrial dynamics, including constant fusion and fission, play critical roles in maintaining mitochondrial morphology and function. Here, we report that developmentally regulated GTP-binding protein 2 (DRG2) regulates mitochondrial morphology by modulating the expression of the mitochondrial fission gene dynamin-related protein 1 (Drp1). shRNA-mediated silencing of DRG2 induced mitochondrial swelling, whereas expression of an shRNA-resistant version of DRG2 decreased mitochondrial swelling in DRG2-depleted cells...
May 13, 2017: Biochemical and Biophysical Research Communications
https://read.qxmd.com/read/27669826/drg2-regulates-g2-m-progression-via-the-cyclin-b1-cdk1-complex
#20
JOURNAL ARTICLE
Soo Hwa Jang, Ah-Ram Kim, Neung-Hwa Park, Jeong Woo Park, In-Seob Han
Developmentally regulated GTP-binding protein 2 (DRG2) plays an important role in cell growth. Here we explored the linkage between DRG2 and G2/M phase checkpoint function in cell cycle progression. We observed that knockdown of DRG2 in HeLa cells affected growth in a wound-healing assay, and tumorigenicity in nude mice xenografts. Flow cytometry assays and [(3)H] incorporation assays indicated that G2/M phase arrest was responsible for the decreased proliferation of these cells. Knockdown of DRG2 elicited down-regulation of the major mitotic promoting factor, the cyclin B1/Cdk1 complex, but up-regulation of the cell cycle arresting proteins, Wee1, Myt1, and p21...
September 2016: Molecules and Cells
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