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https://www.readbyqxmd.com/read/28443125/viral-vectors-for-plant-genome-engineering
#1
REVIEW
Syed Shan-E-Ali Zaidi, Shahid Mansoor
Recent advances in genome engineering (GE) has made it possible to precisely alter DNA sequences in plant cells, providing specifically engineered plants with traits of interest. Gene targeting efficiency depends on the delivery-method of both sequence-specific nucleases and repair templates, to plant cells. Typically, this is achieved using Agrobacterium mediated transformation or particle bombardment, both of which transform only a subset of cells in treated tissues. The alternate in planta approaches, stably integrating nuclease-encoding cassettes and repair templates into the plant genome, are time consuming, expensive and require extra regulations...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28443108/the-kinase-activity-of-calcineurin-b-like-interacting-protein-kinase-26-cipk26-influences-its-own-stability-and-that-of-the-aba-regulated-ubiquitin-ligase-keep-on-going-keg
#2
Wendy J Lyzenga, Victoria Sullivan, Hongxia Liu, Sophia L Stone
The Really Interesting New Gene (RING)-type E3 ligase, Keep on Going (KEG) plays a critical role in Arabidopsis growth after germination and the connections between KEG and hormone signaling pathways are expanding. With regards to abscisic acid (ABA) signaling, KEG targets ABA-responsive transcription factors abscisic acid insensitive 5, ABF1 and ABF3 for ubiquitination and subsequent degradation through the 26S proteasome. Regulation of E3 ligases through self-ubiquitination is common to RING-type E3 ligases and ABA promotes KEG self-ubiquitination and degradation...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28443083/intracellular-localization-interactions-and-functions-of-capsicum-chlorosis-virus-proteins
#3
Shirani M K Widana Gamage, Ralf G Dietzgen
Tospoviruses are among the most devastating viruses of horticultural and field crops. Capsicum chlorosis virus (CaCV) has emerged as an important pathogen of capsicum and tomato in Australia and South-east Asia. Present knowledge about CaCV protein functions in host cells is lacking. We determined intracellular localization and interactions of CaCV proteins by live plant cell imaging to gain insight into the associations of viral proteins during infection. Proteins were transiently expressed as fusions to autofluorescent proteins in leaf epidermal cells of Nicotiana benthamiana and capsicum...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28440700/selection-and-assessment-of-plant-growth-promoting-rhizobacteria-pgpr-for-biological-control-of-multiple-plant-diseases
#4
Ke Liu, Molli Newman, John A McInroy, Chia-Hui Hu, Joseph W Kloepper
A study was designed to screen individual strains of plant growth-promoting rhizobacteria (PGPR) for broad-spectrum disease suppression in vitro and in planta. In a preliminary screen, 28 of 196 strains inhibited eight different tested pathogens in vitro. In a secondary screen, these 28 strains showed broad spectrum antagonistic activity to six different genera of pathogens, and 24 of the 28 strains produced five traits reported to be related to plant growth promotion, including nitrogen fixation, phosphate solubilization, indole-3-acetic acid (IAA) production, siderophore production, and biofilm formation...
April 25, 2017: Phytopathology
https://www.readbyqxmd.com/read/28439869/studying-protein-protein-interactions-in-planta-using-advanced-fluorescence-microscopy
#5
Marc Somssich, Rüdiger Simon
The formation of protein complexes through direct protein-protein interaction is essential for virtually every biological process, and accordingly the ability to determine the interaction properties of specific proteins is important to understand these processes. Förster resonance energy transfer (FRET) measurements are state-of-the-art confocal fluorescence microscopy- and imaging-based techniques that allow the analysis of protein interactions in vivo and in planta, in specific compartments of single cells or tissues...
2017: Methods in Molecular Biology
https://www.readbyqxmd.com/read/28439853/crispr-cas-mediated-in-planta-gene-targeting
#6
Simon Schiml, Friedrich Fauser, Holger Puchta
The recent emergence of the CRISPR/Cas system has boosted the possibilities for precise genome engineering approaches throughout all kingdoms of life. The most common application for plants is targeted mutagenesis, whereby a Cas9-mediated DNA double-strand break (DSB) is repaired by mutagenic nonhomologous end joining (NHEJ). However, the site-specific alteration of a genomic sequence or integration of a transgene relies on the precise repair by homologous recombination (HR) using a suitable donor sequence: this poses a particular challenge in plants, as NHEJ is the preferred repair mechanism for DSBs in somatic tissue...
2017: Methods in Molecular Biology
https://www.readbyqxmd.com/read/28439294/impact-of-lignin-polymer-backbone-esters-on-ionic-liquid-pretreatment-of-poplar
#7
Kwang Ho Kim, Tanmoy Dutta, John Ralph, Shawn D Mansfield, Blake A Simmons, Seema Singh
BACKGROUND: Biomass pretreatment remains an essential step in lignocellulosic biofuel production, largely to facilitate the efficient removal of lignin and increase enzyme accessibility to the polysaccharides. In recent years, there have been significant efforts in planta to reduce lignin content or modify its composition to overcome the inherent recalcitrance that it imposes on lignocellulosic biomass during processing. Here, transgenic poplar lines in which monolignol ferulate conjugates were synthesized during cell wall development to introduce, during lignification, readily cleavable ester linkages into the lignin polymer backbone (i...
2017: Biotechnology for Biofuels
https://www.readbyqxmd.com/read/28437636/chimeric-flock-house-virus-protein-a-with-endoplasmic-reticulum-targeting-domain-enhances-viral-replication-and-virus-like-particle-trans-encapsidation-in-plants
#8
Yiyang Zhou, Christopher M Kearney
Flock House virus (FHV) RNA can be trans-encapsidated, entirely in planta, by tobacco mosaic virus coat protein to form virus-like particles (VLPs). Vaccination with these VLPs leads to strong antigen expression in mice and immune-activation. We hypothesize that creating an additional cellular site for replication and/or trans-encapsidation might significantly improve the final output of trans-encapsidated product. FHV protein A was engineered to target the endoplasmic reticulum (ER) via a heterologous tobacco etch virus ER-targeting domain, and was expressed in cis or in trans relative to the replicating FHV RNA1...
April 21, 2017: Virology
https://www.readbyqxmd.com/read/28432544/expression-of-cphb-and-cphe-type-cyanophycinases-in-cyanophycin-producing-tobacco-and-comparison-of-their-ability-to-degrade-cyanophycin-in-plant-and-plant-extracts
#9
Daniel Ponndorf, Inge Broer, Henrik Nausch
Increasing the arginine (Arg) content in plants used as feed or food is of interest, since the supplementation of food with conditionally essential Arg has been shown to have nutritional benefits. An increase was achieved by the expression of the Arg-rich bacterial storage component, cyanophycin (CGP), in the chloroplast of transgenic plants. CGP is stable in plants and its degradation into β-aspartic acid (Asp)-Arg dipeptides, is solely catalyzed by bacterial cyanophycinases (CGPase). Dipeptides can be absorbed by animals even more efficiently than free amino acids (Matthews and Adibi 1976; Wenzel et al...
April 21, 2017: Transgenic Research
https://www.readbyqxmd.com/read/28432096/interaction-between-dapg-and-hcn-producing-pseudomonas-brassicacearum-lbum300-and-clavibacter-michiganensis-subsp-michiganensis-in-the-rhizosphere-of-tomato
#10
Mélanie M Paulin, Amy Novinscak, Carine Lanteigne, Vijay J Gadkar, Martin Filion
We have previously demonstrated that inoculation of tomato plants with 2,4-diacetylphloroglucinol (DAPG) and hydrogen cyanide (HCN) producing Pseudomonas brassicacearum LBUM300 could significantly reduce bacterial canker symptoms caused by Clavibacter michiganensis subsp. michiganensis (Cmm). In this study, in order to better characterize the population dynamics of LBUM300 in the rhizosphere of tomato plants, we characterized the role played by DAPG and HCN production by LBUM300 on rhizosphere colonization of healthy and Cmm-infected tomato plants...
April 21, 2017: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/28428809/leucine-rich-repeat-containing-variable-lymphocyte-receptors-as-modules-to-target-plant-expressed-proteins
#11
André C Velásquez, Kinya Nomura, Max D Cooper, Brantley R Herrin, Sheng Yang He
BACKGROUND: The ability to target and manipulate protein-based cellular processes would accelerate plant research; yet, the technology to specifically and selectively target plant-expressed proteins is still in its infancy. Leucine-rich repeats (LRRs) are ubiquitously present protein domains involved in mediating protein-protein interactions. LRRs confer the binding specificity to the highly diverse variable lymphocyte receptor (VLR) antibodies (including VLRA, VLRB and VLRC types) that jawless vertebrates make as the functional equivalents of jawed vertebrate immunoglobulin-based antibodies...
2017: Plant Methods
https://www.readbyqxmd.com/read/28424727/host-induced-silencing-of-two-pharyngeal-gland-genes-conferred-transcriptional-alteration-of-cell-wall-modifying-enzymes-of-meloidogyne-incognita-vis-%C3%A3-vis-perturbed-nematode-infectivity-in-eggplant
#12
Tagginahalli N Shivakumara, Sonam Chaudhary, Divya Kamaraju, Tushar K Dutta, Pradeep K Papolu, Prakash Banakar, Rohini Sreevathsa, Bhupinder Singh, K M Manjaiah, Uma Rao
The complex parasitic strategy of Meloidogyne incognita appears to involve simultaneous expression of its pharyngeal gland-specific effector genes in order to colonize the host plants. Research reports related to effector crosstalk in phytonematodes for successful parasitism of the host tissue is yet underexplored. In view of this, we have used in planta effector screening approach to understand the possible interaction of pioneer genes (msp-18 and msp-20, putatively involved in late and early stage of M. incognita parasitism, respectively) with other unrelated effectors such as cell-wall modifying enzymes (CWMEs) in M...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28424712/a-functional-approach-towards-understanding-the-role-of-the-mitochondrial-respiratory-chain-in-an-endomycorrhizal-symbiosis
#13
Louis Mercy, Eva Lucic-Mercy, Amaia Nogales, Areg Poghosyan, Carolin Schneider, Birgit Arnholdt-Schmitt
Arbuscular mycorrhizal fungi (AMF) are crucial components of fertile soils, able to provide several ecosystem services for crop production. Current economic, social and legislative contexts should drive the so-called "second green revolution" by better exploiting these beneficial microorganisms. Many challenges still need to be overcome to better understand the mycorrhizal symbiosis, among which (i) the biotrophic nature of AMF, constraining their production, while (ii) phosphate acts as a limiting factor for the optimal mycorrhizal inoculum application and effectiveness...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28424709/evolutionary-analysis-of-snf1-related-protein-kinase2-snrk2-and-calcium-sensor-scs-gene-lineages-and-dimerization-of-rice-homologs-suggest-deep-biochemical-conservation-across-angiosperms
#14
Lynn D Holappa, Pamela C Ronald, Elena M Kramer
Members of the sucrose non-fermenting related kinase Group2 (SnRK2) subclasses are implicated in both direct and indirect abscisic acid (ABA) response pathways. We have used phylogenetic, biochemical, and transient in vivo approaches to examine interactions between Triticum tauschii protein kinase 1 (TtPK1) and an interacting protein, Oryza sativa SnRK2-calcium sensor (OsSCS1). Given that TtPK1 has 100% identity with its rice ortholog, osmotic stress/ABA-activated protein kinase (OsSAPK2), we hypothesized that the SCS and TtPK1 interactions are present in both wheat and rice...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28423458/dissecting-virulence-function-from-recognition-cell-death-suppression-in-nicotiana-benthamiana-by-xopq-hopq1-family-effectors-relies-on-eds1-dependent-immunity
#15
Norman Adlung, Ulla Bonas
Many Gram-negative plant pathogenic bacteria express effector proteins of the XopQ/HopQ1 family which are translocated into plant cells via the type III secretion system during infection. In Nicotiana benthamiana, recognition of XopQ/HopQ1 proteins induces an effector-triggered immunity (ETI) reaction which is not associated with strong cell death but renders plants immune against Pseudomonas syringae and Xanthomonas campestris pv. vesicatoria strains. Additionally, XopQ suppresses cell death in N. benthamiana when transiently co-expressed with cell death inducers...
April 19, 2017: Plant Journal: for Cell and Molecular Biology
https://www.readbyqxmd.com/read/28419310/calmodulin-as-a-ca2-sensing-subunit-of-arabidopsis-cyclic-nucleotide-gated-channel-complexes
#16
Cornelia Fischer, Thomas A DeFalco, Purva Karia, Wayne A Snedden, Wolfgang Moeder, Keiko Yoshioka, Petra Dietrich
Ca2+ serves as a universal second messenger in eukaryotic signaling pathways, and the spatial and temporal patterns of Ca2+ concentration changes are determined by feedback and feed-forward regulation of the involved transport proteins. Cyclic nucleotide-gated channels (CNGCs) are Ca2+-permeable channels that interact with the ubiquitous Ca2+ sensor calmodulin (CaM). CNGCs interact with CaMs via diverse CaM-binding sites, including an IQ-motif, which has been identified in the C-termini of CNGC20 and CNGC12...
April 13, 2017: Plant & Cell Physiology
https://www.readbyqxmd.com/read/28409535/sumoylation-e3-ligase-siz1-modulates-plant-immunity-partly-through-the-immune-receptor-gene-snc1-in-arabidopsis
#17
Mingyue Gou, Quansheng Huang, Weiqiang Qian, Zemin Zhang, Zhenhua Jia, Jian Hua
The small ubiqutin-like modifier E3 ligase SIZ1 regulates multiple processes in Arabidopsis, including salicylic-acid-dependent immune responses. However, the targets of SIZ1 in plant immunity are not known. Here, we provide evidence that the plant immune receptor nucleotide-binding leucine-rich repeat gene SNC1 partially mediates the regulation of plant immunity by SIZ1. The siz1 loss-of-function mutant has an autoimmune phenotype that is dependent on SNC1 and temperature. Overexpression of SIZ1 partially rescues autoimmune mutant phenotypes induced by activation or overaccumulation of SNC1, and the SNC1 protein amount is attenuated by SIZ1 overexpression...
April 14, 2017: Molecular Plant-microbe Interactions: MPMI
https://www.readbyqxmd.com/read/28403192/a-novel-meloidogyne-graminicola-effector-mggpp-is-secreted-into-host-cells-and-undergoes-glycosylation-in-concert-with-proteolysis-to-suppress-plant-defenses-and-promote-parasitism
#18
Jiansong Chen, Borong Lin, Qiuling Huang, Lili Hu, Kan Zhuo, Jinling Liao
Plant pathogen effectors can recruit the host post-translational machinery to mediate their post-translational modification (PTM) and regulate their activity to facilitate parasitism, but few studies have focused on this phenomenon in the field of plant-parasitic nematodes. In this study, we show that the plant-parasitic nematode Meloidogyne graminicola has evolved a novel effector, MgGPP, that is exclusively expressed within the nematode subventral esophageal gland cells and up-regulated in the early parasitic stage of M...
April 2017: PLoS Pathogens
https://www.readbyqxmd.com/read/28400785/dihydroflavonol-4-reductase-genes-from-freesia-hybrida-play-important-and-partially-overlapping-roles-in-the-biosynthesis-of-flavonoids
#19
Yueqing Li, Xingxue Liu, Xinquan Cai, Xiaotong Shan, Ruifang Gao, Song Yang, Taotao Han, Shucai Wang, Li Wang, Xiang Gao
Dihydroflavonol-4-reductase (DFR) is a key enzyme in the reduction of dihydroflavonols to leucoanthocyanidins in both anthocyanin biosynthesis and proanthocyanidin accumulation. In many plant species, it is encoded by a gene family, however, how the different copies evolve either to function in different tissues or at different times or to specialize in the use of different but related substrates needs to be further investigated, especially in monocot plants. In this study, a total of eight putative DFR-like genes were firstly cloned from Freesia hybrida...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28400777/quantitative-methods-to-assess-differential-susceptibility-of-arabidopsis-thaliana-natural-accessions-to-dickeya-dadantii
#20
Martine Rigault, Amélie Buellet, Céline Masclaux-Daubresse, Mathilde Fagard, Fabien Chardon, Alia Dellagi
Among the most devastating bacterial diseases of plants, soft rot provoked by Dickeya spp. cause crop yield losses on a large range of species with potato being the most economically important. The use of antibiotics being prohibited in most countries in the field, identifying tolerance genes is expected to be one of the most effective alternate disease control approaches. A prerequisite for the identification of tolerance genes is to develop robust disease quantification methods and to identify tolerant plant genotypes...
2017: Frontiers in Plant Science
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