keyword
https://read.qxmd.com/read/38656249/study-on-the-role-and-mechanism-of-slc3a2-in-tumor-associated-macrophage-polarization-and-bladder-cancer-cells-growth
#1
JOURNAL ARTICLE
Peishan Wu, Lingna Zhao, Guangqi Kong, Bo Song
Background: Solute carrier family 3 member 2 (SLC3A2) is highly expressed in various types of cancers, including bladder cancer (BLCA). However, the role and mechanism of SLC3A2 in the onset and progression of BLCA are still unclear. Methods: The interfering plasmid for SLC3A2 was constructed and transfected into BLCA cells. Cell proliferation, invasion, and migration abilities were assessed to evaluate the impact of SLC3A2 silencing on BLCA cell growth. M1 and M2 macrophage polarization markers were detected to evaluate macrophage polarization...
2024: Technology in Cancer Research & Treatment
https://read.qxmd.com/read/38654733/diabetes-primes-neutrophils-for-neutrophil-extracellular-trap-formation-through-trained-immunity
#2
JOURNAL ARTICLE
Sanjeeb Shrestha, Yu-Bin Lee, Hoyul Lee, Yeon-Kyung Choi, Bo-Yoon Park, Mi-Jin Kim, Young-Jin Youn, Sun-Hwa Kim, Soo-Jung Jung, Dong-Keun Song, Hee Kyung Jin, Jae-Sung Bae, In-Kyu Lee, Jae-Han Jeon, Chang-Won Hong
Neutrophils are primed for neutrophil extracellular trap (NET) formation during diabetes, and excessive NET formation from primed neutrophils compromises wound healing in patients with diabetes. Here, we demonstrate that trained immunity mediates diabetes-induced NET priming in neutrophils. Under diabetic conditions, neutrophils exhibit robust metabolic reprogramming comprising enhanced glycolysis via the pentose phosphate pathway and fatty acid oxidation, which result in the accumulation of acetyl-coenzyme A...
2024: Research: a science partner journal
https://read.qxmd.com/read/38653976/a-genomic-basis-of-vocal-rhythm-in-birds
#3
JOURNAL ARTICLE
Matteo Sebastianelli, Sifiso M Lukhele, Simona Secomandi, Stacey G de Souza, Bettina Haase, Michaella Moysi, Christos Nikiforou, Alexander Hutfluss, Jacquelyn Mountcastle, Jennifer Balacco, Sarah Pelan, William Chow, Olivier Fedrigo, Colleen T Downs, Ara Monadjem, Niels J Dingemanse, Erich D Jarvis, Alan Brelsford, Bridgett M vonHoldt, Alexander N G Kirschel
Vocal rhythm plays a fundamental role in sexual selection and species recognition in birds, but little is known of its genetic basis due to the confounding effect of vocal learning in model systems. Uncovering its genetic basis could facilitate identifying genes potentially important in speciation. Here we investigate the genomic underpinnings of rhythm in vocal non-learning Pogoniulus tinkerbirds using 135 individual whole genomes distributed across a southern African hybrid zone. We find rhythm speed is associated with two genes that are also known to affect human speech, Neurexin-1 and Coenzyme Q8A...
April 23, 2024: Nature Communications
https://read.qxmd.com/read/38653841/regulation-of-mitochondrial-fission-by-fatty-acyl-coenzyme-a
#4
JOURNAL ARTICLE
(no author information available yet)
No abstract text is available yet for this article.
April 23, 2024: Nature Cell Biology
https://read.qxmd.com/read/38650121/tanshinone%C3%A2-iia-suppresses-ferroptosis-to-attenuate-renal-podocyte-injury-in-diabetic-nephropathy-through-the-embryonic-lethal-abnormal-visual-like-protein%C3%A2-1-and-acyl-coenzyme%C3%A2-a-synthetase-long-chain-family-member%C3%A2-4-signaling-pathway
#5
JOURNAL ARTICLE
Shuai Zhu, Zhiqiang Kang, Fengjiao Zhang
AIMS/INTRODUCTION: Tanshinone IIA (TIIA) is one of the main components of the root of the red-rooted Salvia miltiorrhiza Bunge. However, the molecular mechanisms underlying TIIA-mediated protective effects in diabetic nephropathy (DN) are still unclear. MATERIALS AND METHODS: High glucose (HG)-induced mouse podocyte cell line (MPC5) cells were used as the in vitro model of DN and treated with TIIA. Cell viability, proliferation and apoptosis were detected using 3-(4, 5-dimethylthiazolyl-2)-2, 5-diphenyltetrazolium bromide, 5-ethynyl-2'-deoxyuridine and flow cytometry assays...
April 22, 2024: Journal of Diabetes Investigation
https://read.qxmd.com/read/38647953/iterative-gene-integration-mediated-by-26s-rdna-and-non-homologous-end-joining-for-the-efficient-production-of-lycopene-in-yarrowia-lipolytica
#6
JOURNAL ARTICLE
Zhen Luo, Jiang-Ting Shi, Xin-Liang Chen, Jun Chen, Feng Liu, Liu-Jing Wei, Qiang Hua
Because of its potent antioxidant effects, lycopene has been used in various industries including, but not limited to, food, medical, and cosmetic industries. Yarrowia lipolytica, a non-conventional yeast species, is a promising chassis due to its natural mevalonate (MVA) pathway, abundant precursor acetyl coenzyme A content, and oleaginous properties. Several gene editing tools have been developed for Y. lipolytica along with engineering strategies for tetraterpenoid production. In this study, we engineered Y...
November 24, 2023: Bioresources and Bioprocessing
https://read.qxmd.com/read/38646572/new-biochemical-pathways-for-forming-short-chain-fatty-acids-during-fermentation-in-rumen-bacteria
#7
JOURNAL ARTICLE
Timothy J Hackmann
Short-chain fatty acids (SCFA) are essential to cattle as a source of energy and for other roles in metabolism. These molecules are formed during fermentation by microbes in the rumen, but even after decades of study, the biochemical pathways responsible for forming them are not always clear. Here we review recent advances in this area and their importance for improving animal productivity. Studies of bacterial genomes have pointed to unusual biochemical pathways in rumen organisms. One study found that 8% of rumen organisms forming acetate, a major SCFA, had genes for a pathway previously unknown in bacteria...
May 2024: JDS Commun
https://read.qxmd.com/read/38645554/surufatinib-combined-with-photodynamic-therapy-induces-ferroptosis-to-inhibit-cholangiocarcinoma-in-vitro-and-in-tumor-models
#8
JOURNAL ARTICLE
Yun-Peng Huang, Yong-Xiang Wang, Hui Zhou, Zhong-Tao Liu, Zi-Jian Zhang, Li Xiong, Heng Zou, Yu Wen
The curative effect of single therapy for advanced cholangiocarcinoma (CCA) is poor, thus investigating combined treatment strategies holds promise for improving prognosis. Surufatinib (SUR) is a novel multikinase inhibitor that has been confirmed to prolong survival of patients with advanced CCA. Photodynamic therapy (PDT) can also ablate advanced CCA and relieve biliary obstruction. In this study, we explored the anti-CCA effect of SUR combined with PDT, and explored the underlying mechanism. We found that SUR could effectively inhibit the abilities of proliferation, migration and metastasis in CCA cells (HUCCT-1, RBE)...
2024: Frontiers in Pharmacology
https://read.qxmd.com/read/38644406/targeting-ferroptosis-for-treating-kidney-disease
#9
REVIEW
Eikan Mishima
Ferroptosis is a type of regulated cell death hallmarked by iron-mediated excessive lipid oxidation. Over the past decade since the coining of the term ferroptosis, advances in research have led to the identification of intracellular processes that regulate ferroptosis such as GSH-GPX4 pathway and FSP1-coenzyme Q10 /vitamin K pathway. From a disease perspective, the involvement of ferroptosis in pathological conditions including kidney disease has attracted attention. In terms of renal pathophysiology, ferroptosis has been widely investigated for its involvement in ischemia-reperfusion injury, nephrotoxin-induced kidney damage and other renal diseases...
April 22, 2024: Clinical and Experimental Nephrology
https://read.qxmd.com/read/38643378/the-effect-of-coenzyme-q10-supplementation-on-bile-acid-metabolism-insights-from-network-pharmacology-molecular-docking-and-experimental-validation
#10
JOURNAL ARTICLE
Mengcheng Jin, Tangbin Zou, Hairong Huang, Ming Chen, Haoqi Zou, Baoyan Chen, Chengze Lai, Huawen Li, Peiwen Zhang
SCOPE: Bile acids play a crucial role in lipid absorption and the regulation of lipid, glucose, and energy homeostasis. Coenzyme Q10 (CoQ10), a lipophilic antioxidant, has been recognized for its positive effects on obesity and related glycolipid metabolic disorders. However, the relationship between CoQ10 and bile acids has not yet been evaluated. METHODS AND RESULTS: This study assesses the impact of CoQ10 treatment on bile acid metabolism in mice on a high-fat diet using Ultra-Performance Liquid Chromatography-tandem Mass Spectrometry...
April 21, 2024: Molecular Nutrition & Food Research
https://read.qxmd.com/read/38642871/the-alternative-enzymes-bearing-tunicates-lack-multiple-widely-distributed-genes-coding-for-peripheral-oxphos-subunits
#11
JOURNAL ARTICLE
Murilo F Othonicar, Geovana S Garcia, Marcos T Oliveira
The respiratory chain alternative enzymes (AEs) NDX and AOX from the tunicate Ciona intestinalis (Ascidiacea) have been xenotopically expressed and characterized in human cells in culture and in the model organisms Drosophila melanogaster and mouse, with the purpose of developing bypass therapies to combat mitochondrial diseases in human patients with defective complexes I and III/IV, respectively. The fact that the genes coding for NDX and AOX have been lost from genomes of evolutionarily successful animal groups, such as vertebrates and insects, led us to investigate if the composition of the respiratory chain of Ciona and other tunicates differs significantly from that of humans and Drosophila, to accommodate the natural presence of AEs...
April 18, 2024: Biochimica et Biophysica Acta. Bioenergetics
https://read.qxmd.com/read/38642679/structural-and-mechanistic-investigations-on-cc-bond-forming-%C3%AE-oxoamine-synthase-allowing-l-glutamate-as-substrate
#12
JOURNAL ARTICLE
Dai-Ke Zhang, Kai-Yuan Song, Ya-Qian Yan, Jian-Ting Zheng, Jun Xu, Lin-Tai Da, Min-Juan Xu
Carbon‑carbon bonds serve as the fundamental structural backbone of organic molecules. As a critical CC bond forming enzyme, α-oxoamine synthase is responsible for the synthesis of α-amino ketones by performing the condensation reaction between amino acids and acyl-CoAs. We previously identified an α-oxoamine synthase, named as Alb29, involved in albogrisin biosynthesis in Streptomyces albogriseolus MGR072. This enzyme belongs to the α-oxoamine synthase (AOS) family, a subfamily under the pyridoxal 5'-phosphate (PLP) dependent enzyme superfamily...
April 18, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38641905/hydroxymethylglutaryl-coa-reductase-activity-is-essential-for-mitochondrial-%C3%AE-oxidation-of-fatty-acids-to-prevent-lethal-accumulation-of-long-chain-acylcarnitines-in-the-mouse-liver
#13
JOURNAL ARTICLE
Edgars Liepinsh, Liga Zvejniece, Laura Clemensson, Melita Ozola, Edijs Vavers, Helena Cirule, Stanislava Korzh, Sandra Skuja, Valerija Groma, Monta Briviba, Solveiga Grinberga, Wen Liu, Paweł Olszewski, Mélissa Gentreau, Robert Fredriksson, Maija Dambrova, Helgi B Schiöth
BACKGROUND AND PURPOSE: Statins are competitive inhibitors of 3-hydroxy-3-methylglutaryl coenzyme A (HMG-CoA) reductase (HMGCR), and exert adverse effects on mitochondrial function, although the mechanisms underlying these effects remain unclear. We used a tamoxifen-induced Hmgcr-knockout (KO) mouse model, a multi-omics approach and mitochondrial function assessments to investigate whether decreased HMGCR activity impacts key liver energy metabolism pathways. EXPERIMENTAL APPROACH: We established a new mouse strain using the Cre/loxP system, which enabled whole-body deletion of Hmgcr expression...
April 19, 2024: British Journal of Pharmacology
https://read.qxmd.com/read/38641593/decoding-the-role-of-oxidative-stress-resistance-and-alternative-carbon-substrate-assimilation-in-the-mature-biofilm-growth-mode-of-candida-glabrata
#14
JOURNAL ARTICLE
Khem Raj, Dhiraj Paul, Praveen Rishi, Geeta Shukla, Dhiraj Dhotre, YogeshSouche
BACKGROUND: Biofilm formation is viewed as a vital mechanism in C. glabrata pathogenesis. Although, it plays a significant role in virulence but transcriptomic architecture and metabolic pathways governing the biofilm growth mode of C. glabrata remain elusive. The present study intended to investigate the genes implicated in biofilm growth phase of C. glabrata through global transcriptomic approach. RESULTS: Functional analysis of Differentially expressed genes (DEGs) using gene ontology and pathways analysis revealed that upregulated genes are involved in the glyoxylate cycle, carbon-carbon lyase activity, pre-autophagosomal structure membrane and vacuolar parts whereas, down- regulated genes appear to be associated with glycolysis, ribonucleoside biosynthetic process, ribosomal and translation process in the biofilm growth condition...
April 20, 2024: BMC Microbiology
https://read.qxmd.com/read/38641068/rapid-hplc-method-reveals-dynamic-shifts-in-coenzyme-q-redox-state
#15
JOURNAL ARTICLE
Victor Vitvitsky, Roshan Kumar, Jutta Diessl, David A Hanna, Ruma Banerjee
Ubiquinol or coenzyme Q (CoQ) is a lipid-soluble electron carrier in the respiratory chain and an electron acceptor for various enzymes in metabolic pathways that intersect at this cofactor hub in the mitochondrial inner membrane. The reduced form of CoQ is an antioxidant, which protects against lipid peroxidation. In this study, we have optimized a UV-detected HPLC method for CoQ analysis from biological materials, which involves a rapid single-step extraction into n-propanol followed by direct sample injection onto a column...
April 17, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38640826/mir-24-3p-enhances-the-treg-th17-balance-to-improve-cerebral-ischemic-injury-by-suppressing-acetyl-coa-carboxylase-1-expression
#16
JOURNAL ARTICLE
Yong Wang, Yan Yang, Lijun Xie, Xiaona An, Lu Zhang
BACKGROUND: Targeting ACC1 (acetyl coenzyme A carboxylase 1) to restore the balance between T-helper 17 (Th17) cells and regulatory T cells (Tregs) through metabolic reprogramming has emerged as a promising strategy for reducing neuroinflammation following stroke. We examined the roles of potential miRNAs in regulating ACC1 expression in Tregs and treating ischemic stroke. METHODS: The expression of miR-24-3p in CD4+ T cells of mice was confirmed. Then the protective effects of Ago-24-3p in a mouse model of prolonged occlusion of the distal middle cerebral artery (dMCAO) were examined...
April 16, 2024: Journal of Neuroimmunology
https://read.qxmd.com/read/38638895/whole-genome-analysis-suggesting-probiotic-potential-and-safety-properties-of-pediococcus-pentosaceus-dspzpp1-a-promising-lab-strain-isolated-from-traditional-fermented-sausages-of-the-basilicata-region-southern-italy
#17
JOURNAL ARTICLE
Madhura S Tathode, Maria Grazia Bonomo, Silvia Zappavigna, Stefania Mirela Mang, Marco Bocchetti, Ippolito Camele, Michele Caraglia, Giovanni Salzano
INTRODUCTION: Many lactic acid bacteria (LAB) strains are currently gaining attention in the food industry and various biological applications because of their harmless and functional properties. Given the growing consumer demand for safe food, further research into potential probiotic bacteria is beneficial. Therefore, we aimed to characterize Pediococcus pentosaceus DSPZPP1, a LAB strain isolated from traditional fermented sausages from the Basilicata region of Southern Italy. METHODS: In this study, we analyzed the whole genome of the P...
2024: Frontiers in Microbiology
https://read.qxmd.com/read/38637716/the-fur-like-regulatory-protein-map3773c-modulates-key-metabolic-pathways-in-mycobacterium-avium-subsp-paratuberculosis-under-in-vitro-iron-starvation
#18
JOURNAL ARTICLE
Sajani Thapa, Govardhan Rathnaiah, Denise K Zinniel, Raul G Barletta, John P Bannantine, Marianne Huebner, Srinand Sreevatsan
Johne's disease (JD) is a chronic enteric infection of dairy cattle worldwide. Mycobacterium avium subsp. paratuberculosis (MAP), the causative agent of JD, is fastidious often requiring eight to sixteen weeks to produce colonies in culture-a major hurdle in the diagnosis and therefore in implementation of optimal JD control measures. A significant gap in knowledge is the comprehensive understanding of the metabolic networks deployed by MAP to regulate iron both in-vitro and in-vivo. The genome of MAP carries MAP3773c, a putative metal regulator, which is absent in all other mycobacteria...
April 18, 2024: Scientific Reports
https://read.qxmd.com/read/38635960/m6a-rna-methylation-and-implications-for-hepatic-lipid-metabolism
#19
JOURNAL ARTICLE
Xinyue Ming, Shirui Chen, Huijuan Li, Yun Wang, Le Zhou, Yuncheng Lv
This review presents a summary of recent progress in research on the N6-methyladenosine (m6A) modification and regulatory roles in hepatic lipid metabolism. As the most abundant internal modification of eukaryotic RNA, the m6A modification is a dynamic and reversible process of the m6A enzyme system, which includes writers, erasers, and readers. m6A methylation depressed lipid synthesis and facilitated lipolysis in liver. The depletion of m6A methyltransferase Mettl14/Mettl3 raised fatty acid synthase (FAS), stearoyl-CoA desaturase-1 (SCD1), acetyl-CoA carboxylase (ACC), and elongase of very long chain fatty acids 6 (ELOVL6) in rodent liver, causing increases in liver weight, triglyceride (TG) production, and content in hepatocytes...
April 18, 2024: DNA and Cell Biology
https://read.qxmd.com/read/38635942/remodeling-the-homologous-recombination-mechanism-of-yarrowia-lipolytica-for-high-level-biosynthesis-of-squalene
#20
JOURNAL ARTICLE
Man Xu, Nan Yang, Jiang Pan, Qiang Hua, Chun-Xiu Li, Jian-He Xu
Squalene is a high-value antioxidant with many commercial applications. The use of microbial cell factories to produce squalene as an alternative to plant and animal extracts could meet increasing market demand. Yarrowia lipolytica is an excellent host for squalene production due to its high levels of acetyl-CoA and a hydrophobic environment. However, the need for precise and complicated gene editing has hindered the industrialization of this strain. Herein, the rapid construction of a strain with high squalene production was achieved by enhancing the homologous recombination efficiency in Y...
April 18, 2024: Journal of Agricultural and Food Chemistry
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