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https://read.qxmd.com/read/37970507/a-genome-wide-association-study-for-the-fatty-acid-composition-of-breast-meat-in-an-f2-crossbred-chicken-population
#1
JOURNAL ARTICLE
Eunjin Cho, Minjun Kim, Sunghyun Cho, Hee-Jin So, Ki-Teak Lee, Jihye Cha, Daehyeok Jin, Jun Heon Lee
The composition of fatty acids determines the flavor and quality of meat. Flavor compounds are generated during the cooking process by the decomposition of volatile fatty acids via lipid oxidation. A number of research on candidate genes related to fatty acid content in livestock species have been published. The majority of these studies focused on pigs and cattle; the association between fatty acid composition and meat quality in chickens has rarely been reported. Therefore, this study investigated candidate genes associated with fatty acid composition in chickens...
July 2023: Journal of Animal Science and Technology
https://read.qxmd.com/read/33421990/assessing-genomic-diversity-and-signatures-of-selection-in-jiaxian-red-cattle-using-whole-genome-sequencing-data
#2
REVIEW
Xiaoting Xia, Shunjin Zhang, Huaju Zhang, Zijing Zhang, Ningbo Chen, Zhigang Li, Hongxia Sun, Xian Liu, Shijie Lyu, Xianwei Wang, Zhiming Li, Peng Yang, Jiawei Xu, Xiaoting Ding, Qiaoting Shi, Eryao Wang, Baorui Ru, Zejun Xu, Chuzhao Lei, Hong Chen, Yongzhen Huang
BACKGROUND: Native cattle breeds are an important source of genetic variation because they might carry alleles that enable them to adapt to local environment and tough feeding conditions. Jiaxian Red, a Chinese native cattle breed, is reported to have originated from crossbreeding between taurine and indicine cattle; their history as a draft and meat animal dates back at least 30 years. Using whole-genome sequencing (WGS) data of 30 animals from the core breeding farm, we investigated the genetic diversity, population structure and genomic regions under selection of Jiaxian Red cattle...
January 9, 2021: BMC Genomics
https://read.qxmd.com/read/32530565/a-recurrent-pja1-variant-in-trigonocephaly-and-neurodevelopmental-disorders
#3
JOURNAL ARTICLE
Toshimitsu Suzuki, Toshifumi Suzuki, Matthieu Raveau, Noriko Miyake, Genki Sudo, Yoshinori Tsurusaki, Takaki Watanabe, Yuki Sugaya, Tetsuya Tatsukawa, Emi Mazaki, Atsushi Shimohata, Itaru Kushima, Branko Aleksic, Tomoko Shiino, Tomoko Toyota, Yoshimi Iwayama, Kentaro Nakaoka, Iori Ohmori, Aya Sasaki, Ken Watanabe, Shinichi Hirose, Sunao Kaneko, Yushi Inoue, Takeo Yoshikawa, Norio Ozaki, Masanobu Kano, Takeyoshi Shimoji, Naomichi Matsumoto, Kazuhiro Yamakawa
OBJECTIVE: Neurodevelopmental disorders (NDDs) often associate with epilepsy or craniofacial malformations. Recent large-scale DNA analyses identified hundreds of candidate genes for NDDs, but a large portion of the cases still remain unexplained. We aimed to identify novel candidate genes for NDDs. METHODS: We performed exome sequencing of 95 patients with NDDs including 51 with trigonocephaly and subsequent targeted sequencing of additional 463 NDD patients, functional analyses of variant in vitro, and evaluations of autism spectrum disorder (ASD)-like phenotypes and seizure-related phenotypes in vivo...
July 2020: Annals of Clinical and Translational Neurology
https://read.qxmd.com/read/30897172/genetic-and-epigenetic-profiling-of-the-infertile-male
#4
JOURNAL ARTICLE
Stephanie Cheung, Alessandra Parrella, Zev Rosenwaks, Gianpiero D Palermo
Evaluation of reproductive quality of spermatozoa by standard semen analysis is often inadequate to predict ART outcome. Men may be prone to meiotic error and have higher proportion of spermatozoa with fragmented chromatin, capable of affecting the conceptus' health. In men with unexplained infertility, supplementary tests may be pivotal to gain insight into the paternal contribution to the zygotic genome. A total of 113 consenting men were included in the study, with an additional 5 donor specimens used as control...
2019: PloS One
https://read.qxmd.com/read/30780197/whole-genome-resequencing-to-identify-candidate-genes-for-the-qtl-for-oleic-acid-percentage-in-japanese-black-cattle
#5
JOURNAL ARTICLE
Fuki Kawaguchi, Hiroto Kigoshi, Moriyuki Fukushima, Eiji Iwamoto, Eiji Kobayashi, Kenji Oyama, Hideyuki Mannen, Shinji Sasazaki
In our previous study, we detected a QTL for the oleic acid percentage (C18:1) on BTA9 in Japanese Black cattle through a genome-wide association study (GWAS). In this study, we performed whole-genome resequencing on eight animals with higher and lower C18:1 to identify candidate polymorphisms for the QTL. A total of 39,658 polymorphisms were detected in the candidate region, which were narrowed to 1993 polymorphisms within 23 genes based on allele differences between the high and low C18:1 groups. We subsequently selected three candidate genes, that is, CYB5R4, MED23, and VNN1, among the 23 genes based on their function in fatty acid metabolism...
April 2019: Animal Science Journal
https://read.qxmd.com/read/30031388/%C3%AE-tocotrienol-feeding-modulates-gene-expression-of-eif2-mtor-protein-ubiquitination-through-multiple-signaling-pathways-in-chronic-hepatitis-c-patients
#6
JOURNAL ARTICLE
Asaf A Qureshi, Dilshad A Khan, Shahida Mushtaq, Shui Qing Ye, Min Xiong, Nilofer Qureshi
BACKGROUND: δ-Tocotrienol is a naturally occurring proteasome inhibitor, which has the capacity to inhibit proliferation and induce apoptosis in several cancer cells obtained from several organs of humans, and other cancer cell lines. Moreover, results of plasma total mRNAs after δ-tocotrienol feeding to hepatitis C patients revealed significant inhibition in the expression of pro-inflammatory cytokines (TNF-α, VCAM1, proteasome subunits) and induction in the expression of ICAM1 and IFN-γ after post-treatment...
July 21, 2018: Lipids in Health and Disease
https://read.qxmd.com/read/28709640/genome-wide-identification-of-genes-essential-for%C3%A2-podocyte-cytoskeletons-based%C3%A2-on%C3%A2-single-cell-rna%C3%A2-sequencing
#7
JOURNAL ARTICLE
Yuqiu Lu, Yuting Ye, Wenduona Bao, Qianqian Yang, Jinquan Wang, Zhihong Liu, Shaolin Shi
Gene expression differs substantially among individual cells of the same type. We speculate that genes that are expressed in all but a portion of cells of a given cell type would be likely essential and required for either the cell survival (housekeeping) or for the cell type's unique structure and function, enabling the organism to survive. Here, we performed RNA-seq of 20 mouse podocytes using the Fluidigm C1 system and identified 335 genes that were expressed in all of them. Among them, 239 genes were also expressed in mesangial and endothelial cells and were involved in energy metabolism, protein synthesis, etc...
November 2017: Kidney International
https://read.qxmd.com/read/25222615/adaptive-human-cdkal1-variants-underlie-hormonal-response-variations-at-the-enteroinsular-axis
#8
JOURNAL ARTICLE
Chia Lin Chang, James J Cai, Shang Yu Huang, Po Jen Cheng, Ho Yen Chueh, Sheau Yu Teddy Hsu
Recent analyses have identified positively selected loci that explain differences in immune responses, body forms, and adaptations to extreme climates, but variants that describe adaptations in energy-balance regulation remain underexplored. To identify variants that confer adaptations in energy-balance regulation, we explored the evolutionary history and functional associations of candidate variants in 207 genes. We screened single nucleotide polymorphisms in genes that had been associated with energy-balance regulation for unusual genetic patterns in human populations, followed by studying associations among selected variants and serum levels of GIP, insulin, and C-peptide in pregnant women after an oral glucose tolerance test...
2014: PloS One
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