keyword
https://read.qxmd.com/read/38652017/early-aggregation-mechanism-of-sod1-28-38-based-on-force-field-parameter-of-5-cyano-tryptophan
#1
JOURNAL ARTICLE
Mueed Ur Rahman, Saira Bano, Xiaokun Hong, Ruo-Xu Gu, Hai-Feng Chen
The aggregation of superoxide dismutase 1 (SOD1) results in amyloid deposition and is involved in familial amyotrophic lateral sclerosis, a fatal motor neuron disease. There have been extensive studies of its aggregation mechanism. Noncanonical amino acid 5-cyano-tryptophan (5-CN-Trp), which has been incorporated into the amyloid segments of SOD1 as infrared probes to increase the structural sensitivity of IR spectroscopy, is found to accelerate the overall aggregation rate and potentially modulate the aggregation process...
April 23, 2024: Journal of Chemical Information and Modeling
https://read.qxmd.com/read/38651279/divergent-polymer-superstructures-from-protonated-poly-adenine-dna-and-rna
#2
JOURNAL ARTICLE
Lachlan Cox, Changzhuang Bai, Casey M Platnich, Felix J Rizzuto
Studies have shown that poly(adenine) DNA and RNA strands protonate at a low pH to form self-associating duplexes; however, the nanoscopic morphology of these structures is unclear. Here, we use Transition Electron Microscopy (TEM), Atomic Force Microscopy (AFM), dynamic light scattering (DLS), and fluorescence spectroscopy to show that both ribose identity (DNA or RNA) and assembly conditions (thermal or room-temperature annealing) dictate unique hierarchical structures for poly(adenine) sequences at a low pH...
April 23, 2024: Biomacromolecules
https://read.qxmd.com/read/38648912/in-vivo-micro-computed-tomography-evaluation-of-radiopaque-polymeric-device-degradation-in-normal-and-inflammatory-environments
#3
JOURNAL ARTICLE
Kendell M Pawelec, Jeremy M L Hix, Arianna Troia, Keith MacRenaris, Matti Kiupel, Erik Shapiro
Polymeric biomedical implants are an important clinical tool, but degradation remains difficult to determine post-implantation. Computed tomography (CT) could be a powerful tool for device monitoring, but polymers require incorporation of radiopaque contrast agents to be distinguishable from tissue. In addition, immune response to radiopaque devices must be characterized as it modulates device function. Radiopaque devices and films were produced by incorporating 0-20wt% TaOx nanoparticles into polymers: polycaprolactone (PCL) and poly(lactide-co-glycolide) (PLGA)...
April 20, 2024: Acta Biomaterialia
https://read.qxmd.com/read/38642675/inhibition-kinetics-of-acetylcholinesterase-and-butyrylcholinesterase-from-various-species-by-2-2-cresyl-4h-1-3-2-benzodioxaphosphorin-2-oxide-cbdp
#4
JOURNAL ARTICLE
Gabriele Horn, Sebastian Rappenglück, Franz Worek
The aerotoxic syndrome has been associated with exposure to tricresyl phosphate (TCP), which is used as additive in hydraulic fluids and engine lubricants. The toxic metabolite 2-(2-cresyl)-4H-1,3,2-benzodioxaphosphorin-2-oxide (CBDP) is formed from the TCP isomer tri-ortho-cresyl phosphate (TOCP) in vivo and is known to react with the active site serine in acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) resulting in the inhibition of the enzymes. Previous in vitro studies showed pronounced species differences in the inhibition kinetics of cholinesterases by organophosphorus compounds (OP), which must be considered in the development of relevant animal models for the investigation of OP poisoning and the aerotoxic syndrome...
April 18, 2024: Toxicology Letters
https://read.qxmd.com/read/38642052/chiral-pyclen-based-heptadentate-chelates-as-highly-stable-mri-contrast-agents
#5
JOURNAL ARTICLE
Yong Jian, Gengshen Mo, Weiyuan Xu, Yao Liu, Zhichao Zhang, Yinghui Ding, Ruonan Gao, Jiao Xu, Jiang Zhu, Kun Shu, Zhihan Yan, Fabio Carniato, Carlos Platas-Iglesias, Fangfu Ye, Mauro Botta, Lixiong Dai
In recent years, pyclen-based complexes have attracted a great deal of interest as magnetic resonance imaging (MRI) contrast agents (CAs) and luminescent materials, as well as radiopharmaceuticals. Remarkably, gadopiclenol, a Gd(III) bishydrated complex featuring a pyclen-based heptadentate ligand, received approval as a novel contrast agent for clinical MRI application in 2022. To maximize stability and efficiency, two novel chiral pyclen-based chelators and their complexes were developed in this study. Gd-X-PCTA-2 showed significant enhancements in both thermodynamic and kinetic stabilities compared to those of the achiral parent derivative Gd-PCTA ...
April 20, 2024: Inorganic Chemistry
https://read.qxmd.com/read/38640928/kinetic-cooperativity-resolves-bidirectional-clogging-within-the-nuclear-pore-complex
#6
JOURNAL ARTICLE
Tiantian Zheng, Anton Zilman
As the main gatekeeper of the nucleocytoplasmic transport in eukaryotic cells, the nuclear pore complex (NPC) faces the daunting task of facilitating the bidirectional transport of a high volume of macromolecular cargoes while ensuring the selectivity, speed, and efficiency of this process. The competition between opposing nuclear import and export fluxes passing through the same channel is expected to pose a major challenge to transport efficiency. It has been suggested that phase separation-like radial segregation of import and export fluxes within the assembly of intrinsically disordered proteins that line the NPC pore could be a mechanism for ensuring efficient bidirectional transport...
April 10, 2024: Biophysical Journal
https://read.qxmd.com/read/38640922/the-gamma-variate-in-contrast-enhanced-imaging-a-unified-view-and-method-from-computed-to-electrical-impedance-tomography
#7
JOURNAL ARTICLE
Diogo Filipe Silva, Steffen Leonhardt
Modern medical imaging plays a vital role in clinical practice, enabling non-invasive visualization of anatomical structures. Dynamic contrast enhancement (DCE) imaging is a technique that uses contrast agents to visualize blood flow dynamics in a time-resolved manner. It can be applied to different modalities, such as computed tomography (CT) and electrical impedance tomography (EIT). This study aims to develop a common theoretical and practical hemodynamic extraction basis for DCE modelling across modalities, based on the gamma-variate function...
April 19, 2024: Physics in Medicine and Biology
https://read.qxmd.com/read/38640720/leucine-zipper-as-a-bridge-for-transaminase-self-assembly-a-fusion-enzyme-for-efficient-chiral-conversion-of-d-phenylglycine
#8
JOURNAL ARTICLE
Jiali Liu, Xin Zhang, Zilong Shao, Jingwen Yang, Hongbin Zhang
Amino acid transferase is a family of enzymes used to catalyze and separate chiral amino acids. However, due to the low efficiency, by-products and reverse reactions occur in cascade reactions. Therefore, in the research, phenylglycine aminotransferase and aspartate aminotransferase were self-assembled in vitro by leucine zipper. The self-assembled enzyme system with d-phenylglycine and α-ketoglutarate as substrates were used for the chiral transformation reaction. By studying the enzyme combination, kinetic reaction stability and catalytic efficiency, it was found that the self-assembled enzyme showed improved stability and better affinity to the substrate than the control and achieved only ee value of 17...
April 16, 2024: Bioorganic Chemistry
https://read.qxmd.com/read/38640443/photophysical-studies-of-helicate-and-mesocate-double-stranded-dinuclear-ru-ii-complexes
#9
JOURNAL ARTICLE
Xinyue Xu, Samuel J P Marlton, Kate L Flint, Rohan J Hudson, F Richard Keene, Christopher R Hall, Trevor A Smith
The metal-ligand charge transfer (3 MLCT) and phosphorescence-quenching metal-centered (3 MC) states of the helicate and mesocate diastereoisomers of a double-stranded dinuclear polypyridylruthenium(II) complex have been investigated using ultrafast transient absorption spectroscopy. At 294 K, transient signals of the helicate decayed significantly slower than those of the mesocate, whereas at 77 K, no clear contrast in kinetics was observed. Contributions to excited-state decay from high-lying 3 MLCT states were identified at both temperatures...
April 19, 2024: Journal of Physical Chemistry. A
https://read.qxmd.com/read/38640231/suppressing-metal-leaching-and-sintering-in-hydroformylation-reaction-by-modulating-the-coordination-of-rh-single-atoms-with-reactants
#10
JOURNAL ARTICLE
Zhounan Yu, Shengxin Zhang, Leilei Zhang, Xiaoyan Liu, Zhenghao Jia, Lin Li, Na Ta, An Wang, Wei Liu, Aiqin Wang, Tao Zhang
Hydroformylation reaction is one of the largest homogeneously catalyzed industrial processes yet suffers from difficulty and high cost in catalyst separation and recovery. Heterogeneous single-atom catalysts (SACs), on the other hand, have emerged as a promising alternative due to their high initial activity and reasonable regioselectivity. Nevertheless, the stability of SACs against metal aggregation and leaching during the reaction has rarely been addressed. Herein, we elucidate the mechanism of Rh aggregation and leaching by investigating the structural evolution of Rh1 @silicalite-1 SAC in response to different adsorbates (CO, H2 , alkene, and aldehydes) by using diffuse reflectance infrared Fourier transform spectroscopy, X-ray adsorption fine structure, and scanning transmission electron microscopy techniques and kinetic studies...
April 19, 2024: Journal of the American Chemical Society
https://read.qxmd.com/read/38639742/phosphorylation-of-cardiac-sodium-channel-at-ser571-anticipates-manifestations-of-the-aging-myopathy
#11
JOURNAL ARTICLE
Emanuele Pizzo, Daniel O Cervantes, Harshada Ketkar, Valentina Ripa, Drew M Nassal, Benjamin Buck, Sreema P Parambath, Valeria Di Stefano, Kanwardeep Singh, Carl I Thompson, Peter J Mohler, Thomas J Hund, Jason T Jacobson, Sudhir Jain, Marcello Rota
Diastolic dysfunction and delayed ventricular repolarization are typically observed in the elderly, but whether these defects are intimately associated in the progressive manifestation of the aging myopathy remains to be determined. In this regard, aging in experimental animals is coupled with increased late Na+ current (INaL ) in cardiomyocytes, raising the possibility that INaL conditions the modality of electrical recovery and myocardial relaxation of the aged heart. For this purpose, aging male and female wild-type (WT) C57Bl/6 mice were studied together with genetically engineered mice with phosphomimetic (gain-of-function, GoF) or ablated (loss-of-function, LoF) mutations of the sodium channel Nav1...
April 19, 2024: American Journal of Physiology. Heart and Circulatory Physiology
https://read.qxmd.com/read/38637527/redefined-ion-association-constants-have-consequences-for-calcium-phosphate-nucleation-and-biomineralization
#12
JOURNAL ARTICLE
David P McDonogh, Julian D Gale, Paolo Raiteri, Denis Gebauer
Calcium orthophosphates (CaPs), as hydroxyapatite (HAP) in bones and teeth are the most important biomineral for humankind. While clusters in CaP nucleation have long been known, their speciation and mechanistic pathways to HAP remain debated. Evidently, mineral nucleation begins with two ions interacting in solution, fundamentally underlying solute clustering. Here, we explore CaP ion association using potentiometric methods and computer simulations. Our results agree with literature association constants for Ca2+ and H2 PO4 - , and Ca2+ and HPO4 2- , but not for Ca2+ and PO4 3- ions, which previously has been strongly overestimated by two orders of magnitude...
April 18, 2024: Nature Communications
https://read.qxmd.com/read/38636954/removal-of-antiretroviral-drugs-from-wastewater-using-activated-macadamia-nutshells-adsorption-kinetics-adsorption-isotherms-and-thermodynamic-studies
#13
JOURNAL ARTICLE
Lindokuhle Simelane, Precious Mahlambi, Sebastien Rochat, Ben Baker
Antiretroviral drugs (ARVDs) have been extensively employed in health care to improve the quality of life and lifecycle longevity. However, overuse and improper disposal of ARVDs have been recognized as an emerging concern whereby wastewater treatment major recipients. Therefore, in this work, the activated macadamia nutshells (MCNs) were explored as low-cost adsorbents for the removal of ARVDs in wastewater samples. Fourier transform infrared spectroscopy (FTIR), Scanning Electron microscopy (SEM), Brunauer-Emmet-Teller (BET), and Powder X-ray diffraction (PXRD)...
April 2024: Water Environment Research: a Research Publication of the Water Environment Federation
https://read.qxmd.com/read/38636872/persistence-and-evidence-for-accelerated-biodegradation-of-streptomycin-in-agricultural-soils
#14
JOURNAL ARTICLE
Megan Demars, Tim McDowell, Justin Renaud, Andrew Scott, Michael Fruci, Edward Topp
Some antibiotics are used for the treatment of various bacterial crop diseases, and there is a concern that this practice may represent a selection pressure that increases the reservoir of antibiotic resistance carried by bacteria in crop production systems. Since the 1950s the aminoglycoside antibiotic streptomycin has been widely used for the treatment of some bacterial crop diseases such as fire blight in apples and pears. Following application, the time that bacteria will be exposed to the antibiotic, and therefore the pressure for selection of resistance, will vary according to the environmental persistence of the antibiotic...
April 16, 2024: Science of the Total Environment
https://read.qxmd.com/read/38634766/probing-energy-funneling-kinetics-in-nanocrystal-sublattices-for-superior-x-ray-imaging
#15
JOURNAL ARTICLE
Qinxia Wu, Xinqi Xu, Xiaokun Li, Hao Jiang, Xian Qin, Zhongzhu Hong, Xiaofeng Chen, Zhijian Yang, Xiangyu Ou, Lili Xie, Yu He, Sanyang Han, Qiushui Chen, Huanghao Yang
Long-lasting radioluminescence scintillators have recently attracted substantial attention from both research and industrial communities, primarily due to their distinctive capabilities of converting and storing X-ray energy. However, determination of energy-conversion kinetics in these nanocrystals remaines unexplored. Here we investigate energy funneling kinetics in NaLuF4:Mn2+/Gd3+ nanocrystal sublattices via Gd3+-driven microenvironment engineering and Mn2+-mediated radioluminescence profiling. Our photophysical studies reveal effective control of energy-funneling kinetics and demonstrate the tunability of electron trap depth ranging from 0...
April 18, 2024: Angewandte Chemie
https://read.qxmd.com/read/38634301/human-brain-clearance-imaging-pathways-taken-by-magnetic-resonance-imaging-contrast-agents-after-administration-in-cerebrospinal-fluid-and-blood
#16
REVIEW
Matthias J P van Osch, Anders Wåhlin, Paul Scheyhing, Ingrid Mossige, Lydiane Hirschler, Anders Eklund, Klara Mogensen, Ryszard Gomolka, Alexander Radbruch, Sara Qvarlander, Andreas Decker, Maiken Nedergaard, Yuki Mori, Per Kristian Eide, Katerina Deike, Geir Ringstad
Over the last decade, it has become evident that cerebrospinal fluid (CSF) plays a pivotal role in brain solute clearance through perivascular pathways and interactions between the brain and meningeal lymphatic vessels. Whereas most of this fundamental knowledge was gained from rodent models, human brain clearance imaging has provided important insights into the human system and highlighted the existence of important interspecies differences. Current gold standard techniques for human brain clearance imaging involve the injection of gadolinium-based contrast agents and monitoring their distribution and clearance over a period from a few hours up to 2 days...
April 18, 2024: NMR in Biomedicine
https://read.qxmd.com/read/38633990/tafel-slope-plot-as-a-tool-to-analyze-electrocatalytic-reactions
#17
JOURNAL ARTICLE
Onno van der Heijden, Sunghak Park, Rafaël E Vos, Jordy J J Eggebeen, Marc T M Koper
Kinetic and nonkinetic contributions to the Tafel slope value can be separated using a Tafel slope plot, where a constant Tafel slope region indicates kinetic meaningfulness. Here, we compare the Tafel slope values obtained from linear sweep voltammetry to the values obtained from chronoamperometry and impedance spectroscopy, and we apply the Tafel slope plot to various electrocatalytic reactions. We show that similar Tafel slope values are observed from the different techniques under high-mass-transport conditions for the oxygen evolution reaction on NiFeOOH in 0...
April 12, 2024: ACS Energy Letters
https://read.qxmd.com/read/38633696/to-be-or-not-to-be-a-cytochrome-electrical-characterizations-are-inconsistent-with-geobacter-cytochrome-nanowires
#18
JOURNAL ARTICLE
Matthew J Guberman-Pfeffer
Geobacter sulfurreducens profoundly shapes Earth's biogeochemistry by discharging respiratory electrons to minerals and other microbes through filaments of a two-decades-long debated identity. Cryogenic electron microscopy has revealed filaments of redox-active cytochromes, but the same filaments have exhibited hallmarks of organic metal-like conductivity under cytochrome denaturing/inhibiting conditions. Prior structure-based calculations and kinetic analyses on multi-heme proteins are synthesized herein to propose that a minimum of ~7 cytochrome 'nanowires' can carry the respiratory flux of a Geobacter cell, which is known to express somewhat more (≥20) filaments to increase the likelihood of productive contacts...
2024: Frontiers in Microbiology
https://read.qxmd.com/read/38632733/island-density-scaling-in-reversible-submonolayer-growth-with-attachment-barriers
#19
JOURNAL ARTICLE
Oliver Smirnov, Jacques G Amar
Island nucleation and growth play an important role in thin-film growth. One quantity of particular interest is the exponent χ, which describes the dependence of the saturation island density N_{sat}∼(D_{h}/F)^{-χ} on the ratio D_{h}/F of the monomer hopping rate D_{h} to the deposition rate F. While standard rate equation (RE) theory predicts that χ=i/(i+2) (where i is the critical island size), more recently it has been predicted that in the presence of a strong barrier to the attachment of monomers to islands, a significantly larger value χ=2i/(i+3) may be observed...
March 2024: Physical Review. E
https://read.qxmd.com/read/38629173/angle-resolved-optical-spectroscopy-of-photonic-cellulose-nanocrystal-films-reveals-the-influence-of-additives-on-the-mechanism-of-kinetic-arrest
#20
JOURNAL ARTICLE
Thomas G Parton, Richard M Parker, Sonja Osbild, Silvia Vignolini, Bruno Frka-Petesic
Cellulose nanocrystals (CNCs) are rod-like nanoparticles whose chiral self-assembly into photonic films has been promoted as a sustainable source of colouration. Upon drying, an aqueous CNC suspension passes through two regimes: first, a liquid phase, where the CNCs self-organise into a cholesteric liquid crystal, followed by a kinetically-arrested phase, where the helicoidal structure compresses upon loss of solvent, resulting in a solid film with vibrant structural colour. The transition between these two regimes plays an important role in the visual appearance of photonic CNC films, but details on when and how kinetic arrest occurs have remained elusive...
April 17, 2024: Soft Matter
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