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https://www.readbyqxmd.com/read/28533157/characterization-of-the-cellulosomal-scaffolding-protein-cbpc-from-clostridium-cellulovorans-743b
#1
Daichi Nakajima, Toshiyuki Shibata, Reiji Tanaka, Kouichi Kuroda, Mitsuyoshi Ueda, Hideo Miyake
Clostridium cellulovorans 743B, an anaerobic and mesophilic bacterium, produces an extracellular enzyme complex called the cellulosome on the cell surface. Recently, we have reported the whole genome sequence of C. cellulovorans, which revealed that a total of 4 cellulosomal scaffolding proteins: CbpA, HbpA, CbpB, and CbpC were encoded in the C. cellulovorans genome. In particular, cbpC encoded a 429-residue polypeptide that includes a carbohydrate-binding module (CBM), an S-layer homology module, and a cohesin...
May 19, 2017: Journal of Bioscience and Bioengineering
https://www.readbyqxmd.com/read/28527996/enzymatic-hydrolysis-of-pretreated-alfa-fibers-stipa-tenacissima-using-%C3%AE-d-glucosidase-and-xylanase-of-talaromyces-thermophilus-from-solid-state-fermentation
#2
Hanen Mallek-Fakhfakh, Jawhar Fakhfakh, Kamel Walha, Hajer Hassairi, Ali Gargouri, Hafedh Belghith
This work aims at realizing an optimal hydrolysis of pretreated Alfa fibers (Stipa tenacissima) through the use of enzymes produced from Talaromyces thermophilus AX4, namely β-D-glucosidase and xylanase, by a solid state fermentation process of an agro-industrial waste (wheat bran supplemented with lactose). The carbon source was firstly selected and the optimal values of three other parameters were determined: substrate loading (10g), moisture content (85%) and production time (10 days); which led to an optimized enzymatic juice...
May 17, 2017: International Journal of Biological Macromolecules
https://www.readbyqxmd.com/read/28523288/extracellular-xylanopectinolytic-enzymes-by-bacillus-subtilis-adi1-from-efb-s-compost
#3
Muhammad Hariadi Nawawi, Rosfarizan Mohamad, Paridah Md Tahir, Wan Zuhainis Saad
Microbial xylanase and pectinase are two extremely valuable enzymes, which have captivated much attention. This can be seen from the increased demand for these enzymes by many industrial sectors. This study investigates the isolation and screening of extracellular xylanopectinolytic enzymes-producing bacteria in a submerged fermentation (SmF). Samples are collected from the compost of empty fruit bunch (EFB) at Biocompost Pilot Plant, located at Biorefinery Plant, Universiti Putra Malaysia. From the experiment, out of 20 isolates, 11 isolates show xylanase or/and pectinase activity, and only one isolate (EFB-11) shows the concurrent activities of xylanase and pectinase...
2017: International Scholarly Research Notices
https://www.readbyqxmd.com/read/28521816/biochemical-characterization-of-the-xylan-hydrolysis-profile-of-the-extracellular-endo-xylanase-from-geobacillus-thermodenitrificans-t12
#4
Martinus J A Daas, Patricia Murciano Martínez, Antonius H P van de Weijer, John van der Oost, Willem M de Vos, Mirjam A Kabel, Richard van Kranenburg
BACKGROUND: Endo-xylanases are essential in degrading hemicellulose of various lignocellulosic substrates. Hemicellulose degradation by Geobacillus spp. is facilitated by the hemicellulose utilization (HUS) locus that is present in most strains belonging to this genus. As part of the HUS locus, the xynA gene encoding an extracellular endo-xylanase is one of the few secreted enzymes and considered to be the key enzyme to initiate hemicellulose degradation. Several Geobacillus endo-xylanases have been characterized for their optimum temperature, optimum pH and generation of degradation products...
May 18, 2017: BMC Biotechnology
https://www.readbyqxmd.com/read/28521209/use-of-solid-digestate-for-lignocellulolytic-enzymes-production-through-submerged-fungal-fermentation
#5
Alida Musatti, Elena Ficara, Chiara Mapelli, Cecilia Sambusiti, Manuela Rollini
Studies were performed on the use of the solid fraction of digestate (D) for the production of lignocellulolytic enzymes (endo- and exo-glucanase, xylanase, β-glucosidase and laccase) by fungi, in comparison with wheat straw (benchmark) (W). To date, this is the first report on the use of such an inexpensive substrate in a liquid environment. Submerged instead of solid state fermentation was applied to overcome pH inhibition and increase surface accessibility. A total of 21 fungal strains were tested: the most performing ones were Irpex lacteus DSM1183 for both β-glucosidase (52 IU/g with D, + 400% compared to W) and endo-glucanase (236 IU/g with D, + 470% compared to W), Schizophyllum commune CBS30132 for xylanase (715 IU/g with W, + 145% compared to D) and Pleurotus ostreatus ATCC96997 for laccase (124 IU/g with D, +230% compared to D)...
May 15, 2017: Journal of Environmental Management
https://www.readbyqxmd.com/read/28511724/production-of-a-recombinant-swollenin-from-trichoderma-harzianum-in-escherichia-coli-and-its-potential-synergistic-role-in-biomass-degradation
#6
Clelton A Santos, Jaire A Ferreira-Filho, Anthonia O'Donovan, Vijai K Gupta, Maria G Tuohy, Anete P Souza
BACKGROUND: Fungal swollenins (SWOs) constitute a class of accessory proteins that are homologous to canonical plant expansins. Expansins and expansin-related proteins are well known for acting in the deagglomeration of cellulose structure by loosening macrofibrils. Consequently, SWOs can increase the accessibility and efficiency of the other enzymes involved in the saccharification of cellulosic substrates. Thus, SWOs are promising targets for improving the hydrolysis of plant biomass and for use as an additive to enhance the efficiency of an enzyme cocktail designed for the production of biofuels...
May 16, 2017: Microbial Cell Factories
https://www.readbyqxmd.com/read/28508385/improving-the-temperature-characteristics-and-catalytic-efficiency-of-a-mesophilic-xylanase-from-aspergillus-oryzae-aoxyn11a-by-iterative-mutagenesis-based-on-in-silico-design
#7
Xue-Qing Li, Qin Wu, Die Hu, Rui Wang, Yan Liu, Min-Chen Wu, Jian-Fang Li
To improve the temperature characteristics and catalytic efficiency of a glycoside hydrolase family (GHF) 11 xylanase from Aspergillus oryzae (AoXyn11A), its variants were predicted based on in silico design. Firstly, Gly(21) with the maximum B-factor value, which was confirmed by molecular dynamics (MD) simulation on the three-dimensional structure of AoXyn11A, was subjected to site-saturation mutagenesis. Thus, one variant with the highest thermostability, AoXyn11A(G21I), was selected from the mutagenesis library, E...
December 2017: AMB Express
https://www.readbyqxmd.com/read/28503195/strategies-for-improved-isopropanol-butanol-production-by-a-clostridium-strain-from-glucose-and-hemicellulose-through-consolidated-bioprocessing
#8
Fengxue Xin, Tianpeng Chen, Yujiang Jiang, Weiliang Dong, Wenming Zhang, Min Zhang, Hao Wu, Jiangfeng Ma, Min Jiang
BACKGROUND: High cost of traditional substrates and formation of by-products (such as acetone and ethanol) in acetone-butanol-ethanol (ABE) fermentation hindered the large-scale production of biobutanol. Here, we comprehensively characterized a newly isolated solventogenic and xylanolytic Clostridium species, which could produce butanol at a high ratio with elimination of ethanol and conversion of acetone to more value-added product, isopropanol. Ultimately, direct butanol production from hemicellulose was achieved with efficient expression of indigenous xylanase by the novel strain via consolidated bioprocessing...
2017: Biotechnology for Biofuels
https://www.readbyqxmd.com/read/28495621/a-reusable-multipurpose-magnetic-nanobiocatalyst-for-industrial-applications
#9
Mohammad Perwez, Razi Ahmad, Meryam Sardar
A multipurpose magnetic nanobiocatalyst is developed by conjugating Pectinex 3XL (a commercial enzyme containing pectinase, xylanase and cellulase activities) on 3-aminopropyl triethoxysilane activated magnetic nanoparticles. The nanobiocatalyst retained 87% of pectinase, 69% of xylanase and 58% of cellulase activity after conjugation on modified nanoparticles as compared to their soluble counterparts. Thermal stability data at 70°C showed increase in enzyme stability after conjugation to nanoparticles and the kinetic parameters (Km and Vmax) remain unaltered after immobilization...
May 8, 2017: International Journal of Biological Macromolecules
https://www.readbyqxmd.com/read/28490368/erratum-to-genomic-characterization-of-plant-cell-wall-degrading-enzymes-and-in-silico-analysis-of-xylanases-and-polygalacturonases-of-fusarium-virguliforme
#10
Hao-Xun Chang, Craig R Yendrek, Gustavo Caetano-Anolles, Glen L Hartman
No abstract text is available yet for this article.
May 10, 2017: BMC Microbiology
https://www.readbyqxmd.com/read/28490053/prebiotic-effect-of-xylooligosaccharides-produced-from-birchwood-xylan-by-a-novel-fungal-gh11-xylanase
#11
Manuel Nieto-Domínguez, Laura I de Eugenio, María J York-Durán, Barbara Rodríguez-Colinas, Francisco J Plou, Empar Chenoll, Ester Pardo, Francisco Codoñer, María Jesús Martínez
A fungal endoxylanase belonging to the glycoside hydrolase gene family 11 (GH11) was obtained from the ascomycete Talaromyces amestolkiae. The enzyme was purified, characterized and used to produce a mixture of xylooligosaccharides (XOS) from birchwood xylan. A notable yield of neutral XOS was obtained (28.8%) upon enzyme treatment and the mixture contained a negligible amount of xylose, having xylobiose, xylotriose and xylotetraose as its main components. The prebiotic potential of this mixture was demonstrated upon analyzing the variations in microorganisms' composition and organic acids profile in breast-fed child faeces fermentations...
October 1, 2017: Food Chemistry
https://www.readbyqxmd.com/read/28484256/improved-thermostability-of-an-acidic-xylanase-from-aspergillus-sulphureus-by-combined-disulphide-bridge-introduction-and-proline-residue-substitution
#12
Wenhan Yang, Yongzhi Yang, Lingdi Zhang, Hang Xu, Xiaojing Guo, Xu Yang, Bing Dong, Yunhe Cao
As a feed additive, xylanase has been widely applied in the feed of monogastric animals, which contains multiple plant polysaccharides. However, during feed manufacture, the high pelleting temperatures challenge wild-type xylanases. The aim of this study was to improve the thermostability of Aspergillus sulphureus acidic xylanase. According to the predicted protein structure, a series of disulphide bridges and proline substitutions were created in the xylanase by PCR, and the mutants were expressed in Pichia pastoris...
May 8, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28481190/dietary-inclusion-of-arabinoxylo-oligosaccharides-in-response-to-broilers-challenged-with-subclinical-necrotic-enteritis
#13
C Keerqin, N K Morgan, S B Wu, R A Swick, M Choct
1. This study investigated the prebiotic properties of arabinoxylo-oligosaccharides (AXOS) produced both in situ and in vitro for their activity against the onset of necrotic enteritis in broiler chickens. 2. A 2 × 3 factorial arrangement was applied, including necrotic enteritis challenge (challenged/unchallenged) and three dietary treatments from d 10-21. A wheat-soy commercial type basal grower diet was fed with 2% of the wheat proportion replaced by the same amount of either arabinoxylan (AX), AXOS produced from hydrolysing AX with 16000 BXU xylanase in vitro, or AX fed with 16000 BXU xylanase (AX + E)...
May 8, 2017: British Poultry Science
https://www.readbyqxmd.com/read/28475970/structural-comparison-docking-and-substrate-interaction-study-of-modeled-endo-1-4-beta-xylanase-enzyme-of-bacillus-brevis
#14
Nidhi Mathur, Girish K Goswami, Amerendra Nath Pathak
Xylanase belongs to, Glycoside hydrolase family, playing a major role in xylan degradation. Bacterial and most of the fungal Xylanase, are categorized as true Xylanase belong to GH 10 and GH 11 families. Xylanase is an industrially important enzyme. Most of the research has progressed in the field of isolation, purification and characterization of Xylanases, without giving much emphasis on the interaction of the substrate and the enzyme. To study the structure and ligand interaction, xylanase form Bacillus brevis was modeled, docking studies were performed and ligand interactions were studied...
February 24, 2017: Journal of Molecular Graphics & Modelling
https://www.readbyqxmd.com/read/28473812/a-metagenomics-investigation-of-carbohydrate-active-enzymes-along-the-gastrointestinal-tract-of-saudi-sheep
#15
Saad Al-Masaudi, Abdessamad El Kaoutari, Elodie Drula, Hussein Al-Mehdar, Elrashdy M Redwan, Vincent Lombard, Bernard Henrissat
The digestive microbiota of humans and of a wide range of animals has recently become amenable to in-depth studies due to the emergence of DNA-based metagenomic techniques that do not require cultivation of gut microbes. These techniques are now commonly used to explore the feces of humans and animals under the assumption that such samples are faithful proxies for the intestinal microbiota. Sheep (Ovis aries) are ruminant animals particularly adapted to life in arid regions and in particular Najdi, Noaimi (Awassi), and Harrei (Harri) breeds that are raised in Saudi Arabia for milk and/or meat production...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28466501/refolding-the-unfoldable-a-systematic-approach-for-renaturation-of-bacillus-circulans-xylanase
#16
Miriam P Kötzler, Lawrence P McIntosh, Stephen G Withers
Xylanases are important polysaccharide-cleaving catalysts for the pulp and paper, animal feeds and biofuels industries. They have also proved to be valuable model systems for understanding enzymatic catalysis, with one of the best studied being the GH11 xylanase from Bacillus circulans (Bcx). However, proteins from this class are very recalcitrant to refolding in vitro. This both limits their high level expression in heterologous hosts, and prevents experimental approaches, such as peptide ligation or chemical modifications, to probe and engineer their stability and function...
May 2, 2017: Protein Science: a Publication of the Protein Society
https://www.readbyqxmd.com/read/28466305/concomitant-production-of-cellulase-and-xylanase-by-thermophilic-mould-sporotrichum-thermophile-in-solid-state-fermentation-and-their-applicability-in-bread-making
#17
Anju Bala, Bijender Singh
Sporotrichum thermophile BJAMDU5 secreted high titres of xylanolytic and cellulolytic enzymes in solid state fermentation using mixture of wheat straw and cotton oil cake (ratio 1:1) at 45 °C, pH 5.0 after 72 h inoculated with 2.9 × 10(7) CFU/mL conidiospores. Supplementation of solid medium with lactose and ammonium sulphate further enhanced the production of hydrolytic enzymes. Among different surfactants studied, Tween 80 enhanced the production of all enzymes [3455 U/g DMR (dry mouldy residue), 879...
June 2017: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28465063/enzymatic-pulp-upgrade-for-producing-high-value-cellulose-out-of-a-kraft-paper-pulp
#18
Christian Hutterer, Gerhard Kliba, Manuel Punz, Karin Fackler, Antje Potthast
The high-yield separation of polymeric parts from wood-derived lignocellulosic material is indispensable in biorefinery concepts. For the separation of cellulose and xylan from hardwood paper pulps to obtain pulps of high cellulose contents, simple alkaline extractions were found to be the most suitable technology, although having certain limitations. These are embodied by residual alkali resistant xylan incorporated in the pulp matrix. Further purification in order to produce pure cellulose with a low uniformity could be achieved selectively degrading residual xylan and depolymerizing the cellulose macromolecules by xylanase and cellulase...
July 2017: Enzyme and Microbial Technology
https://www.readbyqxmd.com/read/28458407/expression-of-a-fungal-ferulic-acid-esterase-in-suspension-cultures-of-tall-fescue-festuca-arundinacea-decreases-cell-wall-feruloylation-and-increases-rates-of-cell-wall-digestion
#19
Phillip Morris, Sue Dalton, Tim Langdon, Barbara Hauck, Marcia M O de Buanafina
In the cell walls of grasses ferulic acid is esterified to arabinosyl residues in arabinoxylans that can then undergo oxidative coupling reactions to form ferulate dehydrodimers, trimers and oligomers which function to cross-link cell-wall polysaccharides, limiting cell wall degradability. Fungal ferulic acid esterase can release both esterified monomeric and dimeric ferulic acids from these cell wall arabinoxylans making the cell wall more susceptible to further enzymatic attack and increasing cell wall degradability...
2017: Plant Cell, Tissue and Organ Culture
https://www.readbyqxmd.com/read/28454712/transcriptome-based-analysis-of-the-saprophytic-fungus-abortiporus-biennis-response-to-oxalic-acid
#20
Marcin Grąz, Anna Jarosz-Wilkołazka, Grzegorz Janusz, Andrzej Mazur, Jerzy Wielbo, Piotr Koper, Kamil Żebracki, Agnieszka Kubik-Komar
In this study, the transcriptomic-based response of the white rot fungus Abortiporus biennis to oxalic acid induction was reported. The whole transcriptome of A. biennis was analysed using the RNA-based sequencing technology and Solid 5500 platform. De novo assembly of reads generated 37,719 contigs. A molecular function for 26,280 unique transcripts was assigned. The analysis of the A. biennis transcriptome predicted 635 hypothetical open reading frames encoding carbohydrate active enzymes distributed in 122 families...
June 2017: Microbiological Research
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