keyword
MENU ▼
Read by QxMD icon Read
search

Viruses in soil

keyword
https://www.readbyqxmd.com/read/28820139/risk-for-low-pathogenicity-avian-influenza-virus-on-poultry-farms-the-netherlands-2007-2013
#1
Ruth Bouwstra, Jose L Gonzales, Sjaak de Wit, Julia Stahl, Ron A M Fouchier, Armin R W Elbers
Using annual serologic surveillance data from all poultry farms in the Netherlands during 2007-2013, we quantified the risk for the introduction of low pathogenicity avian influenza virus (LPAIV) in different types of poultry production farms and putative spatial-environmental risk factors: distance from poultry farms to clay soil, waterways, and wild waterfowl areas. Outdoor-layer, turkey (meat and breeder), and duck (meat and breeder) farms had a significantly higher risk for LPAIV introduction than did indoor-layer farms...
September 2017: Emerging Infectious Diseases
https://www.readbyqxmd.com/read/28811756/pseudomonas-oleovorans-strain-kbpf-004-culture-supernatants-reduced-seed-transmission-of-cucumber-green-mottle-mosaic-virus-and-pepper-mild-mottle-virus-and-remodeled-aggregation-of-126-kda-and-subcellular-localization-of-movement-protein-of-pepper-mild-mottle
#2
Nam-Gyu Kim, Eun-Young Seo, Sang-Hyuk Han, Jun-Su Gong, Cheol-Nam Park, Ho-Seop Park, Leslie L Domier, John Hammond, Hyoun-Sub Lim
Efforts to control viral diseases in crop production include several types of physical or chemical treatments; antiviral extracts of a number of plants have also been examined to inhibit plant viral infection. However, treatments utilizing naturally selected microorganisms with activity against plant viruses are poorly documented. Here we report isolation of a soil inhabiting bacterium, Pseudomonas oleovorans strain KBPF-004 (developmental code KNF2016) which showed antiviral activity against mechanical transmission of tobamoviruses...
August 2017: Plant Pathology Journal
https://www.readbyqxmd.com/read/28771152/modeling-effect-of-cover-condition-and-soil-type-on-rotavirus-transport-in-surface-flow
#3
Rabin Bhattarai, Paul C Davidson, Prasanta K Kalita, Mark S Kuhlenschmidt
Runoff from animal production facilities contains various microbial pathogens which pose a health hazard to both humans and animals. Rotavirus is a frequently detected pathogen in agricultural runoff and the leading cause of death among children around the world. Diarrheal infection caused by rotavirus causes more than two million hospitalizations and death of more than 500,000 children every year. Very little information is available on the environmental factors governing rotavirus transport in surface runoff...
August 2017: Journal of Water and Health
https://www.readbyqxmd.com/read/28767675/large-scale-identification-of-gossypium-hirsutum-genes-associated-with-verticillium-dahliae-by-comparative-transcriptomic-and-reverse-genetics-analysis
#4
Wenwei Zhang, Huachong Zhang, Kai Liu, Guiliang Jian, Fangjun Qi, Ning Si
Verticillium wilt is a devastating disease of cotton, which is caused by the soil-borne fungus Verticillium dahliae (V. dahliae). Although previous studies have identified some genes or biological processes involved in the interaction between cotton and V. dahliae, its underlying molecular mechanism remains unclear, especially in G. hirsutum. In the present study, we obtained an overview of transcriptome characteristics of resistant upland cotton (G. hirsutum) after V. dahliae infection at 24 h post-inoculation (hpi) via a high-throughput RNA-sequencing technique...
2017: PloS One
https://www.readbyqxmd.com/read/28755246/biocatalytic-asymmetric-synthesis-of-1r-2s-n-boc-vinyl-acca-ethyl-ester-with-a-newly-isolated-sphingomonas-aquatilis
#5
Shaozhou Zhu, Ying Shi, Xinyu Zhang, Guojun Zheng
1-amino cyclopropane-1-carboxylic acid (ACCA) and its derivatives are essential pharmacophoric unit that widely used in drug research and development. Specifically, (1R, 2S)-N-Boc-vinyl-ACCA ethyl ester (vinyl-ACCA) is a key chiral intermediate in the synthesis of highly potent hepatitis C virus (HCV) NS3/4A protease inhibitors such as asunaprevir and simeprevir. Developing strategies for the asymmetric synthesis of vinyl-ACCA is thus extremely high demand. In this study, 378 bacterial strains were isolated from soil samples using N-Boc-vinyl-ACCA ethyl ester as the sole carbon source and were screened for esterase activity...
July 28, 2017: Applied Biochemistry and Biotechnology
https://www.readbyqxmd.com/read/28730550/disease-management-of-tomato-through-pgpb-current-trends-and-future-perspective
#6
REVIEW
Vipin Kumar Singh, Amit Kishore Singh, Ajay Kumar
Tomato is the world's second most cultivated vegetable. During cultivation or post-harvest storage, it is susceptible to more than 200 diseases caused by an array of pathogenic fungi, nematodes, bacteria, and viruses. Although wide range of chemical pesticides are currently available to manage plant diseases, continuous application of pesticides not only affect the nutritional contents of tomato but also the texture or productivity of soil. In this context, plant growth promoting bacteria (PGPB) are one of the nature friendly, safe, and effective alternatives for the management of diseases and pathogens of tomato...
August 2017: 3 Biotech
https://www.readbyqxmd.com/read/28724405/environmental-drivers-of-viral-community-composition-in-antarctic-soils-identified-by-viromics
#7
Evelien M Adriaenssens, Rolf Kramer, Marc W Van Goethem, Thulani P Makhalanyane, Ian Hogg, Don A Cowan
BACKGROUND: The Antarctic continent is considered the coldest and driest place on earth with simple ecosystems, devoid of higher plants. Soils in the ice-free regions of Antarctica are known to harbor a wide range of microorganisms from primary producers to grazers, yet their ecology and particularly the role of viruses is poorly understood. In this study, we examined the virus community structures of 14 soil samples from the Mackay Glacier region. METHODS: Viral communities were extracted from soil and the dsDNA was extracted, amplified using single-primer amplification, and sequenced using the Ion Torrent Proton platform...
July 19, 2017: Microbiome
https://www.readbyqxmd.com/read/28716067/molecular-characterization-of-group-a-rotaviruses-in-mukuru-slums-kenya-detection-of-novel-strains-circulating-in-children-below-5%C3%A2-years-of-age
#8
Joshua Ndung'u Gikonyo, James Nyangao, Cecilia Mbae, Carlene Sang, Eliud Njagi, Joseph Ngeranwa, Mathew Esona, Mapaseka L Seheri, Grace W Gitau, Kedra Raini, Samuel Kariuki
BACKGROUND: Gastroenteritis is a public health concern due to high morbidity and mortality among children. Rotaviruses are the leading etiological agents of severe gastroenteritis in children and accounts for more than half a million deaths per year in Africa. The study aimed at investigating the rotavirus genotypes that were circulating in children aged 5 years and below in and around Mukuru slums in Nairobi County Kenya. METHODS: A purposive cross sectional sampling method was applied where 166 samples were collected from children below 5 years of age and taken to Kenya Medical Research Institute virology laboratory...
July 17, 2017: BMC Research Notes
https://www.readbyqxmd.com/read/28672885/characterization-of-sinorhizobium-sp-lm21-prophages-and-virus-encoded-dna-methyltransferases-in-the-light-of-comparative-genomic-analyses-of-the-sinorhizobial-virome
#9
Przemyslaw Decewicz, Monika Radlinska, Lukasz Dziewit
The genus Sinorhizobium/Ensifer mostly groups nitrogen-fixing bacteria that create root or stem nodules on leguminous plants and transform atmospheric nitrogen into ammonia, which improves the productivity of the plants. Although these biotechnologically-important bacteria are commonly found in various soil environments, little is known about their phages. In this study, the genome of Sinorhizobium sp. LM21 isolated from a heavy-metal-contaminated copper mine in Poland was investigated for the presence of prophages and DNA methyltransferase-encoding genes...
June 26, 2017: Viruses
https://www.readbyqxmd.com/read/28665726/epidemiologic-investigation-of-highly-pathogenic-h5n2-avian-influenza-among-upper-midwest-u-s-turkey-farms-2015
#10
S J Wells, M M Kromm, E T VanBeusekom, E J Sorley, M E Sundaram, K VanderWaal, J W J Bowers, P A Papinaho, M T Osterholm, J Bender
In 2015, an outbreak of H5N2 highly pathogenic avian influenza (HPAI) occurred in the United States, severely impacting the turkey industry in the upper midwestern United States. Industry, government, and academic partners worked together to conduct a case-control investigation of the outbreak on turkey farms in the Upper Midwest. Case farms were confirmed to have HPAI-infected flocks, and control farms were farms with noninfected turkey flocks at a similar stage of production. Both case and control farms were affiliated with a large integrated turkey company...
June 2017: Avian Diseases
https://www.readbyqxmd.com/read/28651198/the-toxicity-of-cationic-surfactant-hdtma-br-desorbed-from-surfactant-modified-zeolite-towards-faecal-indicator-and-environmental-microorganisms
#11
Peter J Reeve, Howard J Fallowfield
Surfactant Modified Zeolite (SMZ) represents a versatile, cost-effective permeable reactive material, capable of treating multiple classes of contaminants. The potential for HDTMA-Br, a cationic surfactant commonly used to modify zeolite, to desorb from the zeolite surface has been identified as a potential issue for the ongoing use of SMZ in water remediation contexts. This paper investigates the toxicity of HDTMA-Br towards enteric virus surrogates, F-RNA bacteriophage MS2 and E. coli, Bacillus subtilis, and soil microflora...
June 13, 2017: Journal of Hazardous Materials
https://www.readbyqxmd.com/read/28643581/a-white-paper-on-global-wheat-health-based-on-scenario-development-and-analysis
#12
Serge Savary, Annika Djurle, Jonathan Yuen, Andrea Ficke, Vittorio Rossi, Paul Esker, Jose M Fernandes, Emerson Del Ponte, Jatindra Kumar, Laurence V Madden, Pierce A Paul, Neil McRoberts, Pawan Kumar Singh, Laurent Huber, Claude Pope de Vallavieille, Sébastien Saint-Jean, Laetitia Willocquet
Scenario analysis constitutes a useful approach to synthesize knowledge and derive hypotheses in the case of complex systems which are documented with mainly qualitative or very diverse information. In this article, a framework for scenario analysis is designed and then, applied to global wheat health within a timeframe from today to 2050. Scenario analysis entails the choice of settings, the definition of scenarios of change, and the analysis of outcomes of these scenarios in the chosen settings. Three idealized agrosystems, representing a large fraction of the global diversity of wheat-based agrosystems, are considered, which represent the settings of the analysis...
June 23, 2017: Phytopathology
https://www.readbyqxmd.com/read/28600317/efficacy-of-neutral-electrolyzed-water-for-inactivation-of-human-norovirus
#13
Eric Moorman, Naim Montazeri, Lee-Ann Jaykus
Human norovirus (NoV) is the leading cause of acute gastroenteritis worldwide. Persistence on surfaces and resistance to many conventional disinfectants contribute to widespread transmission of norovirus. We examined the efficacy of neutral electrolyzed water (NEW; pH 7) for inactivation of human NoV GII.4 Sydney in suspension (ASTM method 1052-11) and on stainless steel surfaces (ASTM method 1053-11) with and without an additional soil load. The impact of the disinfectant on viral capsid was assessed using reverse transcriptase quantitative PCR (RT-qPCR; with an RNase pretreatment), SDS-PAGE, transmission electron microscopy, and a histo-blood group antigen (HBGA) receptor-binding assay...
August 15, 2017: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/28573011/behaviour-of-free-ranging-wild-boar-towards-their-dead-fellows-potential-implications-for-the-transmission-of-african-swine-fever
#14
Carolina Probst, Anja Globig, Bent Knoll, Franz J Conraths, Klaus Depner
The behaviour of free ranging wild boar (Sus scrofa) towards carcasses of their conspecifics potentially infected with African swine fever (ASF) may significantly influence the course of an ASF epidemic. This study aims to better understand the behaviour of wild boar towards their dead fellows. Thirty-two wild boar carcasses on nine study sites in northeast Germany were monitored under field conditions by photo-trapping from October 2015 until October 2016. During this period, a total of 122 160 pictures were taken, thereof 16 111 pictures of wild boar...
May 2017: Royal Society Open Science
https://www.readbyqxmd.com/read/28572798/phylogenetic-diversity-of-t4-type-phages-in-sediments-from-the-subtropical-pearl-river-estuary
#15
Maoqiu He, Lanlan Cai, Chuanlun Zhang, Nianzhi Jiao, Rui Zhang
Viruses are an abundant and active component of marine sediments and play a significant role in microbial ecology and biogeochemical cycling at local and global scales. To obtain a better understanding of the ecological characteristics of the viriobenthos, the abundance and morphology of viruses and the diversity and community structure of T4-type phages were systematically investigated in the surface sediments of the subtropical Pearl River Estuary (PRE). Viral abundances ranged from 4.49 × 10(8) to 11.7 × 10(8) viruses/g and prokaryotic abundances ranged from 2...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28544449/metagenomic-based-impact-study-of-transgenic-grapevine-rootstock-on-its-associated-virome-and-soil-bacteriome
#16
Jean-Michel Hily, Sandrine Demanèche, Nils Poulicard, Mélanie Tannières, Samia Djennane, Monique Beuve, Emmanuelle Vigne, Gérard Demangeat, Véronique Komar, Claude Gertz, Aurélie Marmonier, Caroline Hemmer, Sophie Vigneron, Armelle Marais, Thierry Candresse, Pascal Simonet, Olivier Lemaire
For some crops, the only possible approach to gain a specific trait requires genome modification. The development of virus-resistant transgenic plants based on the pathogen-derived resistance strategy has been a success story for over three decades. However, potential risks associated with the technology, such as horizontal gene transfer (HGT) of any part of the transgene to an existing gene pool, have been raised. Here, we report no evidence of any undesirable impacts of genetically modified (GM) grapevine rootstock on its biotic environment...
May 25, 2017: Plant Biotechnology Journal
https://www.readbyqxmd.com/read/28542984/applying-quantitative-molecular-tools-for-virus-transport-studies-opportunities-and-challenges
#17
Kelvin Wong, Marirosa Molina
Bacteriophages have been used in soil column studies for the last several decades as surrogates to study the fate and transport behavior of enteric viruses in groundwater. However, recent studies have shown that the transport behavior of bacteriophages and enteric viruses in porous media can be very different. The next generation of virus transport science must therefore provide more data on mobility of enteric viruses and the relationship between transport behaviors of enteric viruses and bacteriophages. To achieve this new paradigm, labor intensity devoted to enteric virus quantification method must be reduced...
May 23, 2017: Ground Water
https://www.readbyqxmd.com/read/28536287/kisameet-glacial-clay-an-unexpected-source-of-bacterial-diversity
#18
Sarah L Svensson, Shekooh Behroozian, Wanjing Xu, Michael G Surette, Loretta Li, Julian Davies
Widespread antibiotic resistance among bacterial pathogens is providing the impetus to explore novel sources of antimicrobial agents. Recently, the potent antibacterial activity of certain clay minerals has stimulated scientific interest in these materials. One such example is Kisameet glacial clay (KC), an antibacterial clay from a deposit on the central coast of British Columbia, Canada. However, our understanding of the active principles of these complex natural substances is incomplete. Like soils, clays may possess complex mixtures of bacterial taxa, including the Actinobacteria, a clade known to be rich in antibiotic-producing organisms...
May 23, 2017: MBio
https://www.readbyqxmd.com/read/28535127/modelling-virus-coinfection-to-inform-management-of-maize-lethal-necrosis-in-kenya
#19
Frank Hilker, Linda Allen, Vrushali Bokil, Cheryl Briggs, Zhilan Feng, Karen A Garrett, Louis Gross, Frédéric Hamelin, Michael J Jeger, Carrie Manore, Alison Power, Margaret Redinbaugh, Megan Rúa, Nik J Cunniffe
Maize lethal necrosis (MLN) has emerged as a serious threat to food security in sub-Saharan Africa. MLN is caused by coinfection with two viruses, maize chlorotic mottle virus (MCMV) and a potyvirus, often sugarcane mosaic virus (SCMV). To better understand dynamics of MLN and to provide insight into disease management, we model the spread of the viruses causing MLN within and between growing seasons. The model allows for transmission via vectors, soil and seeds, as well as exogenous sources of infection. Following model parameterisation, we predict how management affects disease prevalence and crop performance over multiple seasons...
May 23, 2017: Phytopathology
https://www.readbyqxmd.com/read/28494086/functional-ecology-of-soil-microbial-communities-along-a-glacier-forefield-in-tierra-del-fuego-chile
#20
Miguel A Fernández-Martínez, Stephen B Pointing, Sergio Pérez-Ortega, María Arróniz-Crespo, T G Allan Green, Ricardo Rozzi, Leopoldo G Sancho, Asunción de Los Ríos
A previously established chronosequence from Pia Glacier forefield in Tierra del Fuego (Chile) containing soils of different ages (from bare soils to forest ones) is analyzed. We used this chronosequence as framework to postulate that microbial successional development would be accompanied by changes in functionality. To test this, the GeoChip functional microarray was used to identify diversity of genes involved in microbial carbon and nitrogen metabolism, as well as other genes related to microbial stress response and biotic interactions...
September 2016: International Microbiology: the Official Journal of the Spanish Society for Microbiology
keyword
keyword
73707
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"