keyword
https://read.qxmd.com/read/38645993/a-biophysics-toolbox-for-reliable-data-acquisition-and-processing-in-integrated-force-confocal-fluorescence-microscopy
#1
JOURNAL ARTICLE
Zhaowei Liu, Edo van Veen, Humberto Sánchez, Belén Solano, Francisco J Palmero Moya, Kaley A McCluskey, Daniel Ramírez Montero, Theo van Laar, Nynke H Dekker
Integrated single-molecule force-fluorescence spectroscopy setups allow for simultaneous fluorescence imaging and mechanical force manipulation and measurements on individual molecules, providing comprehensive dynamic and spatiotemporal information. Dual-beam optical tweezers (OT) combined with a confocal scanning microscope form a force-fluorescence spectroscopy apparatus broadly used to investigate various biological processes, in particular, protein:DNA interactions. Such experiments typically involve imaging of fluorescently labeled proteins bound to DNA and force spectroscopy measurements of trapped individual DNA molecules...
April 17, 2024: ACS Photonics
https://read.qxmd.com/read/38627385/programmable-photoacoustic-patterning-of-microparticles-in-air
#2
JOURNAL ARTICLE
Ruoqin Zhang, Xichuan Zhao, Jinzhi Li, Di Zhou, Honglian Guo, Zhi-Yuan Li, Feng Li
Optical and acoustic tweezers, despite operating on different physical principles, offer non-contact manipulation of microscopic and mesoscopic objects, making them essential in fields like cell biology, medicine, and nanotechnology. The advantages and limitations of optical and acoustic manipulation complement each other, particularly in terms of trapping size, force intensity, and flexibility. We use photoacoustic effects to generate localized Lamb wave fields capable of mapping arbitrary laser pattern shapes...
April 16, 2024: Nature Communications
https://read.qxmd.com/read/38613299/coherent-spin-phonon-scattering-in-facilitated-rydberg-lattices
#3
JOURNAL ARTICLE
Matteo Magoni, Chris Nill, Igor Lesanovsky
We investigate the dynamics of a one-dimensional spin system with facilitation constraint that can be studied using Rydberg atoms in arrays of optical tweezer traps. The elementary degrees of freedom of the system are domains of Rydberg excitations that expand ballistically through the lattice. Because of mechanical forces, Rydberg excited atoms are coupled to vibrations within their traps. At zero temperature and large trap depth, it is known that virtually excited lattice vibrations only renormalize the timescale of the ballistic propagation...
March 29, 2024: Physical Review Letters
https://read.qxmd.com/read/38612810/light-control-in-microbial-systems
#4
REVIEW
Yara Elahi, Matthew Arthur Barrington Baker
Light is a key environmental component influencing many biological processes, particularly in prokaryotes such as archaea and bacteria. Light control techniques have revolutionized precise manipulation at molecular and cellular levels in recent years. Bacteria, with adaptability and genetic tractability, are promising candidates for light control studies. This review investigates the mechanisms underlying light activation in bacteria and discusses recent advancements focusing on light control methods and techniques for controlling bacteria...
April 3, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38609349/label-free-techniques-for-probing-biomolecular-condensates
#5
REVIEW
Khalid A Ibrahim, Akhil S Naidu, Helena Miljkovic, Aleksandra Radenovic, Wayne Yang
Biomolecular condensates play important roles in a wide array of fundamental biological processes, such as cellular compartmentalization, cellular regulation, and other biochemical reactions. Since their discovery and first observations, an extensive and expansive library of tools has been developed to investigate various aspects and properties, encompassing structural and compositional information, material properties, and their evolution throughout the life cycle from formation to eventual dissolution. This Review presents an overview of the expanded set of tools and methods that researchers use to probe the properties of biomolecular condensates across diverse scales of length, concentration, stiffness, and time...
April 12, 2024: ACS Nano
https://read.qxmd.com/read/38607912/probing-the-stability-and-interdomain-interactions-in-the-abc-transporter-opua-using-single-molecule-optical-tweezers
#6
JOURNAL ARTICLE
Lyan van der Sleen, Jan A Stevens, Siewert J Marrink, Bert Poolman, Kasia Tych
Transmembrane transporter proteins are essential for maintaining cellular homeostasis and, as such, are key drug targets. Many transmembrane transporter proteins are known to undergo large structural rearrangements during their functional cycles. Despite the wealth of detailed structural and functional data available for these systems, our understanding of their dynamics and, consequently, how they function is generally limited. We introduce an innovative approach that enables us to directly measure the dynamics and stability of interdomain interactions of transmembrane proteins using optical tweezers...
April 11, 2024: Cell Reports
https://read.qxmd.com/read/38573047/combined-mutual-learning-net-for-raman-spectral-microbial-strain-identification
#7
JOURNAL ARTICLE
Junfan Chen, Jiaqi Hu, Chenlong Xue, Qian Zhang, Jingyan Li, Ziyue Wang, Jinqian Lv, Aoyan Zhang, Hong Dang, Dan Lu, Defeng Zou, Longqing Cong, Yuchao Li, Gina Jinna Chen, Perry Ping Shum
Infectious diseases pose a significant threat to global health, yet traditional microbiological identification methods suffer from drawbacks, such as high costs and long processing times. Raman spectroscopy, a label-free and noninvasive technique, provides rich chemical information and has tremendous potential in fast microbial diagnoses. Here, we propose a novel Combined Mutual Learning Net that precisely identifies microbial subspecies. It demonstrated an average identification accuracy of 87.96% in an open-access data set with thirty microbial strains, representing a 5...
April 4, 2024: Analytical Chemistry
https://read.qxmd.com/read/38571265/generation-of-arbitrarily-structured-optical-vortex-arrays-based-on-the-epicycle-model
#8
JOURNAL ARTICLE
Yuping Tai, Haihao Fan, Xin Ma, Wenjun Wei, Hao Zhang, Miaomiao Tang, Xinzhong Li
Optical vortex arrays (OVAs) are complex light fields with versatile structures that have been widely studied in large-capacity optical communications, optical tweezers, and optical measurements. However, generating OVAs with arbitrary structures without explicit analytical expressions remains a challenge. To address this issue, we propose an alternative scheme for customizing OVAs with arbitrary structures using an epicycle model and vortex localization techniques. This method can accurately generate an OVA with an arbitrary structure by pre-designing the positions of each vortex...
March 11, 2024: Optics Express
https://read.qxmd.com/read/38571180/multifunctional-metalens-optical-tweezers-for-optical-information-recognition
#9
JOURNAL ARTICLE
Yuehua Deng, Xiaoyan Huang, Zhechun Lu, Dongying Wang, Shaoqi Li, Shengru Zhou, Zhaojian Zhang, Jianfa Zhang, Yang Yu, Junbo Yang
Traditional optical information recognition (OIR), particle capture and manipulation require many optical devices or mechanical moving system components to achieve a specific function, which is difficult to achieve integration. This paper proposes a new method to realize these functions by using multi-focus metalens combining spectrum and polarization selection. The design incorporates three spectral bands, namely 500 nm, 580 nm, and 660 nm, within the visible light range. Additionally, it utilizes either left-handed or right-handed circularly polarized (LCP/RCP) light, resulting in six distinct focus focusing effects on a single focal plane...
March 11, 2024: Optics Express
https://read.qxmd.com/read/38571060/calculation-and-measurement-of-trapping-stiffness-in-femtosecond-optical-tweezers
#10
JOURNAL ARTICLE
Yuebing Li, Yaqiang Qin, Heqiang Wang, Lu Huang, Honglian Guo, Yuqiang Jiang
Due to the characteristics of ultra-short pulse width and ultra-high peak power, femtosecond pulse laser can effectively induce nonlinear optical effects in trapped objects. As a result, it holds great value in the fields of micro and nano manipulation, microfluidics, and cell biology. However, the nonlinear optical effects on the stiffness of femtosecond optical traps remain unclear. Calibration of trap stiffness is crucial for accurately measuring forces and manipulating small particles. In this paper, we compare the stiffness between femtosecond optical traps and continuous wave optical traps...
March 25, 2024: Optics Express
https://read.qxmd.com/read/38570690/an-optical-tweezer-array-of-ultracold-polyatomic-molecules
#11
JOURNAL ARTICLE
Nathaniel B Vilas, Paige Robichaud, Christian Hallas, Grace K Li, Loïc Anderegg, John M Doyle
Polyatomic molecules have rich structural features that make them uniquely suited to applications in quantum information science1-3 , quantum simulation4-6 , ultracold chemistry7 and searches for physics beyond the standard model8-10 . However, a key challenge is fully controlling both the internal quantum state and the motional degrees of freedom of the molecules. Here we demonstrate the creation of an optical tweezer array of individual polyatomic molecules, CaOH, with quantum control of their internal quantum state...
April 3, 2024: Nature
https://read.qxmd.com/read/38563952/control-and-entanglement-of-individual-rydberg-atoms-near-a-nanoscale-device
#12
JOURNAL ARTICLE
Paloma L Ocola, Ivana Dimitrova, Brandon Grinkemeyer, Elmer Guardado-Sanchez, Tamara Đorđević, Polnop Samutpraphoot, Vladan Vuletić, Mikhail D Lukin
Coherent control of Rydberg atoms near dielectric surfaces is a major challenge due to the large sensitivity of Rydberg states to electric fields. We demonstrate coherent single-atom operations and two-qubit entanglement as close as 100  μm from a nanophotonic device. Using the individual atom control enabled by optical tweezers to study the spatial and temporal properties of the electric field from the surface, we employ dynamical decoupling techniques to characterize and cancel the electric-field noise with submicrosecond temporal resolution...
March 15, 2024: Physical Review Letters
https://read.qxmd.com/read/38562622/extracellular-domain-2-of-tspan4-governs-its-functions
#13
JOURNAL ARTICLE
Raviv Dharan, Alisa Vaknin, Raya Sorkin
Tetraspanin 4, a protein with four transmembrane helices and three connecting loops, senses membrane curvature and localizes to membrane tubes. This enrichment in tubular membranes enhances its diverse interactions. While the transmembrane part of the protein likely contributes to curvature sensitivity, the possible roles of the ectodomains in curvature sensitivity of tetraspanin 4 are still unknown. Here, using micropipette aspiration combined with confocal microscopy and optical tweezers, we show that the extracellular loop 2 contributes to the curvature sensitivity and curvature-induced interactions of tetraspanin 4...
June 12, 2024: Biophys Rep (N Y)
https://read.qxmd.com/read/38559627/assessing-cardiac-contractility-from-single-molecules-to-whole-hearts
#14
REVIEW
Ankit Garg, Kory J Lavine, Michael J Greenberg
Fundamentally, the heart needs to generate sufficient force and power output to dynamically meet the needs of the body. Cardiomyocytes contain specialized structures referred to as sarcomeres that power and regulate contraction. Disruption of sarcomeric function or regulation impairs contractility and leads to cardiomyopathies and heart failure. Basic, translational, and clinical studies have adapted numerous methods to assess cardiac contraction in a variety of pathophysiological contexts. These tools measure aspects of cardiac contraction at different scales ranging from single molecules to whole organisms...
March 2024: JACC. Basic to Translational Science
https://read.qxmd.com/read/38553446/correlating-fluorescence-microscopy-optical-and-magnetic-tweezers-to-study-single-chiral-biopolymers-such-as-dna
#15
JOURNAL ARTICLE
Jack W Shepherd, Sebastien Guilbaud, Zhaokun Zhou, Jamieson A L Howard, Matthew Burman, Charley Schaefer, Adam Kerrigan, Clare Steele-King, Agnes Noy, Mark C Leake
Biopolymer topology is critical for determining interactions inside cell environments, exemplified by DNA where its response to mechanical perturbation is as important as biochemical properties to its cellular roles. The dynamic structures of chiral biopolymers exhibit complex dependence with extension and torsion, however the physical mechanisms underpinning the emergence of structural motifs upon physiological twisting and stretching are poorly understood due to technological limitations in correlating force, torque and spatial localization information...
March 29, 2024: Nature Communications
https://read.qxmd.com/read/38542589/the-effect-of-different-system-parameters-on-the-movement-of-microbial-cells-using-light-induced-dielectrophoresis
#16
JOURNAL ARTICLE
Devin Keck, Suma Ravi, Shivam Yadav, Rodrigo Martinez-Duarte
The manipulation of single particles remains a topic of interest with many applications. Here we characterize the impact of selected parameters on the motion of single particles thanks to dielectrophoresis (DEP) induced by visible light, in a technique called Light-induced Dielectrophoresis, or LiDEP, also known as optoelectronic tweezers, optically induced DEP, and image-based DEP. Baker's yeast and Candida cells are exposed to an electric field gradient enabled by shining a photoconductive material with a specific pattern of visible light, and their response is measured in terms of the average cell velocity towards the gradient...
February 29, 2024: Micromachines
https://read.qxmd.com/read/38538609/strongly-interacting-rydberg-atoms-in-synthetic-dimensions-with-a-magnetic-flux
#17
JOURNAL ARTICLE
Tao Chen, Chenxi Huang, Ivan Velkovsky, Kaden R A Hazzard, Jacob P Covey, Bryce Gadway
Synthetic dimensions, wherein dynamics occurs in a set of internal states, have found great success in recent years in exploring topological effects in cold atoms and photonics. However, the phenomena thus far explored have largely been restricted to the non-interacting or weakly interacting regimes. Here, we extend the synthetic dimensions playbook to strongly interacting systems of Rydberg atoms prepared in optical tweezer arrays. We use precise control over driving microwave fields to introduce a tunable U(1) flux in a four-site lattice of coupled Rydberg levels...
March 27, 2024: Nature Communications
https://read.qxmd.com/read/38533854/the-application-of-single-molecule-optical-tweezers-to-study-disease-related-structural-dynamics-in-rna
#18
JOURNAL ARTICLE
Tycho Marinus, Toshana L Foster, Katarzyna M Tych
RNA, a dynamic and flexible molecule with intricate three-dimensional structures, has myriad functions in disease development. Traditional methods, such as X-ray crystallography and nuclear magnetic resonance, face limitations in capturing real-time, single-molecule dynamics crucial for understanding RNA function. This review explores the transformative potential of single-molecule force spectroscopy using optical tweezers, showcasing its capability to directly probe time-dependent structural rearrangements of individual RNA molecules...
March 27, 2024: Biochemical Society Transactions
https://read.qxmd.com/read/38523746/shining-light-in-mechanobiology-optical-tweezers-scissors-and-beyond
#19
REVIEW
Alexander B Stilgoe, Itia A Favre-Bulle, Mark L Watson, Veronica Gomez-Godinez, Michael W Berns, Daryl Preece, Halina Rubinsztein-Dunlop
Mechanobiology helps us to decipher cell and tissue functions by looking at changes in their mechanical properties that contribute to development, cell differentiation, physiology, and disease. Mechanobiology sits at the interface of biology, physics and engineering. One of the key technologies that enables characterization of properties of cells and tissue is microscopy. Combining microscopy with other quantitative measurement techniques such as optical tweezers and scissors, gives a very powerful tool for unraveling the intricacies of mechanobiology enabling measurement of forces, torques and displacements at play...
March 20, 2024: ACS Photonics
https://read.qxmd.com/read/38509856/optoelectronic-tweezers-micro-well-system-for-highly-efficient-single-cell-trapping-dynamic-sorting-and-retrieval
#20
JOURNAL ARTICLE
Chunyuan Gan, Jiaying Zhang, Bo Chen, Ao Wang, Hongyi Xiong, Jiawei Zhao, Chutian Wang, Shuzhang Liang, Lin Feng
Single-cell arrays have emerged as a versatile method for executing single-cell manipulations across an array of biological applications. In this paper, an innovative microfluidic platform is unveiled that utilizes optoelectronic tweezers (OETs) to array and sort individual cells at a flow rate of 20 µL min-1 . This platform is also adept at executing dielectrophoresis (DEP)-based, light-guided single-cell retrievals from designated micro-wells. This presents a compelling non-contact method for the rapid and straightforward sorting of cells that are hard to distinguish...
March 21, 2024: Small
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