keyword
https://read.qxmd.com/read/38551023/mrna-seq-of-testis-and-liver-tissues-reveals-a-testis-specific-gene-and-alternative-splicing-associated-with-hybrid-male-sterility-in-dzo
#1
JOURNAL ARTICLE
Rui Hong, Jiaxin Wu, Xining Chen, Zhenghao Zhang, Xinyue Liu, Meichen Li, Fuyuan Zuo, Gong-Wei Zhang
Alternative splicing (AS) plays an important role in the co-transcription and post-transcriptional regulation of gene expression during mammalian spermatogenesis. The dzo is the male F1 offspring of an interspecific hybrid between a domestic bull (Bos taurus ♂) and a yak (Bos grunniens ♀) which exhibits male sterility. This study aimed to identify the testis-specific genes and AS associated with hybrid male sterility in dzo. The iDEP90 program and rMATS software were used to identify the differentially expressed genes (DEG) and differential alternative splicing genes (DSG) based on RNA-seq data from the liver (n=9) and testis (n=6) tissues of domestic cattle, yak, and dzo...
March 29, 2024: Journal of Animal Science
https://read.qxmd.com/read/38536618/genome-constitution-and-evolution-of-elymus-atratus-poaceae-triticeae-inferred-from-cytogenetic-and-phylogenetic-analysis
#2
JOURNAL ARTICLE
Lu Tan, Dan-Dan Wu, Chang-Bing Zhang, Yi-Ran Cheng, Li-Na Sha, Xing Fan, Hou-Yang Kang, Yi Wang, Hai-Qin Zhang, Marcial Escudero, Yong-Hong Zhou
BACKGROUND: Elymus atratus (Nevski) Hand.-Mazz. is perennial hexaploid wheatgrass. It was assigned to the genus Elymus L. sensu stricto based on morphological characters. Its genome constitution has not been disentangled yet. OBJECTIVE: To identify the genome constitution and origin of E. atratus. METHODS: In this study, genomic in situ hybridization and fluorescence in situ hybridization, and phylogenetic analysis based on the Acc1, DMC1 and matK sequences were performed...
March 27, 2024: Genes & Genomics
https://read.qxmd.com/read/38328171/multifaceted-roles-of-histone-lysine-lactylation-in-meiotic-gene-dynamics-and-recombination
#3
Xiaoyu Zhang, Yan Liu, Ning Wang
Male germ cells, which are responsible for producing millions of genetically diverse sperm through meiosis in the testis, rely on lactate as their central energy metabolite. Recent study has revealed that lactate induces epigenetic modification in cells through histone lactylation, a post-translational modification involving the addition of lactyl groups to lysine residues on histones. Here we report dynamic histone lactylation at histone H4-lysine 5 (K5), -K8, and -K12 during meiosis prophase I in mouse spermatogenesis...
January 26, 2024: bioRxiv
https://read.qxmd.com/read/38173016/extracellular-vesicle-derived-tp53bp1-cd34-and-pbx1-from-human-peripheral-blood-serve-as-potential-biomarkers-for-the-assessment-and-prediction-of-vascular-aging
#4
JOURNAL ARTICLE
Yichao Wen, Haiyang Chen, Yu Wang, Yiqing Sun, Fangfang Dou, Xiling Du, Te Liu, Chuan Chen
BACKGROUND: Vascular aging is an important pathophysiological basis for the senescence of various organs and systems in the human body, and it is a common pathogenetic trigger for many chronic diseases in the elderly. METHODS: The extracellular vesicles (EVs) from young and aged umbilical vein endothelial cells were isolated and identified by qPCR the differential expression levels of 47 mRNAs of genes closely related to aging in the two groups. RESULTS: There were significant differences in the expression levels of 18 genes (we noted upregulation in PLA2G12A, TP53BP1, CD144, PDE11A, FPGT, SERPINB4, POLD1, and PPFIBP2 and downregulation in ATP2C2, ROBO2, RRM2, GUCY1B1, NAT1-14, VEGFR2, WTAPP1, CD146, DMC1, and GRIK2)...
January 3, 2024: Hereditas
https://read.qxmd.com/read/38150101/cytological-and-transcriptomic-analyses-provide-insights-into-the-pollen-fertility-of-synthetic-allodiploid-brassica-juncea-hybrids
#5
JOURNAL ARTICLE
Boyang Wang, Niannian Liang, Xiaohan Shen, Zhengqing Xie, Luyue Zhang, Baoming Tian, Yuxiang Yuan, Jialin Guo, Xiaowei Zhang, Fang Wei, Xiaochun Wei
Imbalanced chromosomes and cell cycle arrest, along with down-regulated genes in DNA damage repair and sperm cell differentiation, caused pollen abortion in synthetic allodiploid Brassica juncea hybrids. Interspecific hybridization is considered to be a major pathway for species formation and evolution in angiosperms, but the occurrence of pollen abortion in the hybrids is common, prompting us to recheck male gamete development in allodiploid hybrids after the initial combination of different genomes. Here, we investigated the several key meiotic and mitotic events during pollen development using the newly synthesised allodiploid B...
December 27, 2023: Plant Cell Reports
https://read.qxmd.com/read/38142595/positive-and-negative-regulators-of-rad51-dmc1-in-homologous-recombination-and-dna-replication
#6
REVIEW
Masaru Ito, Yurika Fujita, Akira Shinohara
RAD51 recombinase plays a central role in homologous recombination (HR) by forming a nucleoprotein filament on single-stranded DNA (ssDNA) to catalyze homology search and strand exchange between the ssDNA and a homologous double-stranded DNA (dsDNA). The catalytic activity of RAD51 assembled on ssDNA is critical for the DNA-homology-mediated repair of DNA double-strand breaks in somatic and meiotic cells and restarting stalled replication forks during DNA replication. The RAD51-ssDNA complex also plays a structural role in protecting the regressed/reversed replication fork...
February 2024: DNA Repair
https://read.qxmd.com/read/38014100/the-dmc1-recombinase-physically-interacts-with-and-promotes-the-meiotic-crossover-functions-of-the-mlh1-mlh3-endonuclease
#7
Gianno Pannafino, Jun Jie Chen, Viraj Mithani, Lisette Payero, Michael Gioia, J Brooks Crickard, Eric Alani
The accurate segregation of homologous chromosomes during the Meiosis I reductional division in most sexually reproducing eukaryotes requires crossing over between homologs. In baker's yeast approximately 80 percent of meiotic crossovers result from Mlh1-Mlh3 and Exo1 acting to resolve double-Holliday junction (dHJ) intermediates in a biased manner. Little is known about how Mlh1-Mlh3 is recruited to recombination intermediates and whether it interacts with other meiotic factors prior to its role in crossover resolution...
November 13, 2023: bioRxiv
https://read.qxmd.com/read/38002960/homologous-recombination-and-repair-functions-required-for-mutagenicity-during-yeast-meiosis
#8
JOURNAL ARTICLE
Liat Morciano, Renana M Elgrabli, Drora Zenvirth, Ayelet Arbel-Eden
Several meiotic events reshape the genome prior to its transfer (via gametes) to the next generation. The occurrence of new meiotic mutations is tightly linked to homologous recombination (HR) and firmly depends on Spo11-induced DNA breaks. To gain insight into the molecular mechanisms governing mutagenicity during meiosis, we examined the timing of mutation and recombination events in cells deficient in various DNA HR-repair genes, which represent distinct functions along the meiotic recombination process...
October 28, 2023: Genes
https://read.qxmd.com/read/37977820/characterization-of-meiotic-recombination-intermediates-through-gene-knockouts-in-founder-hybrid-mice
#9
JOURNAL ARTICLE
Benjamin Davies, Gang Zhang, Daniela Moralli, Samy Alghadban, Daniel Biggs, Chris Preece, Peter Donnelly, Anjali Gupta Hinch
Mammalian meiotic recombination proceeds via repair of hundreds of programmed DNA double-strand breaks, which requires choreographed binding of RPA, DMC1, and RAD51 to single-stranded DNA substrates. High-resolution in vivo binding maps of these proteins provide insights into the underlying molecular mechanisms. When assayed in F1 -hybrid mice, these maps can distinguish the broken chromosome from the chromosome used as template for repair, revealing more mechanistic detail and enabling the structure of the recombination intermediates to be inferred...
November 17, 2023: Genome Research
https://read.qxmd.com/read/37891173/fignl1-aaa-atpase-remodels-rad51-and-dmc1-filaments-in-pre-meiotic-dna-replication-and-meiotic-recombination
#10
JOURNAL ARTICLE
Masaru Ito, Asako Furukohri, Kenichiro Matsuzaki, Yurika Fujita, Atsushi Toyoda, Akira Shinohara
The formation of RAD51/DMC1 filaments on single-stranded (ss)DNAs essential for homology search and strand exchange in DNA double-strand break (DSB) repair is tightly regulated. FIGNL1 AAA+++ ATPase controls RAD51-mediated recombination in human cells. However, its role in gametogenesis remains unsolved. Here, we characterized a germ line-specific conditional knockout (cKO) mouse of FIGNL1. Fignl1 cKO male mice showed defective chromosome synapsis and impaired meiotic DSB repair with the accumulation of RAD51/DMC1 on meiotic chromosomes, supporting a positive role of FIGNL1 in homologous recombination at a post-assembly stage of RAD51/DMC1 filaments...
October 27, 2023: Nature Communications
https://read.qxmd.com/read/37889963/brca2-hsf2bp-oligomeric-ring-disassembly-by-brme1-promotes-homologous-recombination
#11
JOURNAL ARTICLE
Rania Ghouil, Simona Miron, Koichi Sato, Dejan Ristic, Sari E van Rossum-Fikkert, Pierre Legrand, Malika Ouldali, Jean-Marie Winter, Virginie Ropars, Gabriel David, Ana-Andreea Arteni, Claire Wyman, Puck Knipscheer, Roland Kanaar, Alex N Zelensky, Sophie Zinn-Justin
In meiotic homologous recombination (HR), BRCA2 facilitates loading of the recombinases RAD51 and DMC1 at the sites of double-strand breaks (DSBs). The HSF2BP-BRME1 complex interacts with BRCA2. Its absence causes a severe reduction in recombinase loading at meiotic DSB. We previously showed that, in somatic cancer cells ectopically producing HSF2BP, DNA damage can trigger HSF2BP-dependent degradation of BRCA2, which prevents HR. Here, we report that, upon binding to BRCA2, HSF2BP forms octameric rings that are able to interlock into a large ring-shaped 24-nucleotide oligomer...
October 27, 2023: Science Advances
https://read.qxmd.com/read/37841610/editorial-meiosis-in-plants-sexual-reproduction-genetic-variation-and-crop-improvement
#12
EDITORIAL
Yingxiang Wang, Changbin Chen, Gregory P Copenhaver, Chung-Ju Rachel Wang
No abstract text is available yet for this article.
2023: Frontiers in Plant Science
https://read.qxmd.com/read/37781512/srsf1-mediated-alternative-splicing-is-required-for-spermatogenesis
#13
JOURNAL ARTICLE
Wen-Long Lei, Yuan-Yuan Li, Zongchang Du, Ruibao Su, Tie-Gang Meng, Yan Ning, Guanmei Hou, Heide Schatten, Zhen-Bo Wang, Zhiming Han, Fei Sun, Wei-Ping Qian, Chenli Liu, Qing-Yuan Sun
Alternative splicing (AS) plays significant roles in a multitude of fundamental biological activities. AS is prevalent in the testis, but the regulations of AS in spermatogenesis is only little explored. Here, we report that Serine/arginine-rich splicing factor 1 (SRSF1) plays critical roles in alternative splicing and male reproduction. Male germ cell-specific deletion of Srsf1 led to complete infertility by affecting spermatogenesis. Mechanistically, by combining RNA-seq data with LACE-seq data, we showed that SRSF1 affected the AS of Stra8 in a direct manner and Dazl , Dmc1 , Mre11a , Syce2 and Rif1 in an indirect manner...
2023: International Journal of Biological Sciences
https://read.qxmd.com/read/37642817/gene-expression-and-demographic-analyses-in-women-with-the-poor-ovarian-response-a-computational-approach
#14
JOURNAL ARTICLE
Nastaran Bahrami, Arnoosh Nazari, Zahra Afshari, Somayeh Aftabsavad, Ashraf Moini, Zahra Noormohammadi
PURPOSE: Poor response to ovarian stimulation (POR) typically is reflected as decreased follicular response and low estradiol (E2) levels following ovarian stimulation by FSH/HMG. Many genes are involved in oocyte maturation, and demographic features and lifestyle can affect the oocyte maturity and developmental competence. The present study was conducted to investigate the magnitude of gene expression and lifestyle habits in POR women as compared to healthy women, using different statistical and computational methods...
August 29, 2023: Journal of Assisted Reproduction and Genetics
https://read.qxmd.com/read/37632767/fancm-interacts-with-the-mhf1-mhf2-complex-to-limit-crossover-frequency-during-rice-meiosis
#15
JOURNAL ARTICLE
Yafei Li, Yue Zhou, Bingxin Wang, Na Mu, Yongjie Miao, Ding Tang, Yi Shen, Zhukuan Cheng
Crossovers (COs) are necessary for generating genetic diversity that breeders can select, but there are conserved mechanisms that regulate their frequency and distribution. Increasing CO frequency may raise the efficiency of selection by increasing the chance of integrating more desirable traits. In this study, we characterize rice FANCM and explore its functions in meiotic CO control. FANCM mutations do not affect fertility in rice, but they cause a great boost in the overall frequency of COs in both inbred and hybrid rice, according to genetic analysis of the complete set of fancm zmm (hei10, ptd, shoc1, mer3, zip4, msh4, msh5, and heip1) mutants...
August 26, 2023: Plant Journal
https://read.qxmd.com/read/37615022/-dmc1-stabilizes-crossovers-at-high-and-low-temperatures-during-wheat-meiosis
#16
JOURNAL ARTICLE
Tracie N Draeger, MarĂ­a-Dolores Rey, Sadiye Hayta, Mark Smedley, Azahara C Martin, Graham Moore
Effective chromosome synapsis and crossover formation during meiosis are essential for fertility, especially in grain crops such as wheat. These processes function most efficiently in wheat at temperatures between 17-23 °C, although the genetic mechanisms for such temperature dependence are unknown. In a previously identified mutant of the hexaploid wheat reference variety 'Chinese Spring' lacking the long arm of chromosome 5D, exposure to low temperatures during meiosis resulted in asynapsis and crossover failure...
2023: Frontiers in Plant Science
https://read.qxmd.com/read/37598222/scf-rmf-mediates-degradation-of-the-meiosis-specific-recombinase-dmc1
#17
JOURNAL ARTICLE
Wanyue Xu, Yue Yu, Juli Jing, Zhen Wu, Xumin Zhang, Chenjiang You, Hong Ma, Gregory P Copenhaver, Yan He, Yingxiang Wang
Meiotic recombination requires the specific RecA homolog DMC1 recombinase to stabilize strand exchange intermediates in most eukaryotes. Normal DMC1 levels are crucial for its function, yet the regulatory mechanisms of DMC1 stability are unknown in any organism. Here, we show that the degradation of Arabidopsis DMC1 by the 26S proteasome depends on F-box proteins RMF1/2-mediated ubiquitination. Furthermore, RMF1/2 interact with the Skp1 ortholog ASK1 to form the ubiquitin ligase complex SCFRMF1/2 . Genetic analyses demonstrate that RMF1/2, ASK1 and DMC1 act in the same pathway downstream of SPO11-1 dependent meiotic DNA double strand break formation and that the proper removal of DMC1 is crucial for meiotic crossover formation...
August 19, 2023: Nature Communications
https://read.qxmd.com/read/37578152/studying-the-effect-of-hyperoside-on-recovery-from-cyclophosphamide-induced-oligoasthenozoospermia
#18
JOURNAL ARTICLE
Qigang Fan, Ruifen He, Yi Li, Pu Gao, Runchun Huang, Rong Li, Jiayu Zhang, Hongli Li, Xiaolei Liang
Oligoasthenozoospermia is becoming a serious problem, but effective prevention or treatment is lacking. Hyperoside, one of the main active ingredients in traditional Chinese medicine, may be effective in the treatment of oligoasthenozoospermia. In this study, we used cyclophosphamide (CTX: 50 mg/kg) to establish a mouse model of Oligoasthenozoospermia to investigate the therapeutic effect of hyperoside (30 mg/kg) on CTX-induced oligoasthenozoospermia. All mice were divided into four groups: blank control group (Control), treatment control group (Hyp), disease group (CTX) and treatment group (CTX + H)...
August 14, 2023: Systems Biology in Reproductive Medicine
https://read.qxmd.com/read/37548404/recombinase-independent-chromosomal-rearrangements-between-dispersed-inverted-repeats-in-saccharomyces-cerevisiae-meiosis
#19
JOURNAL ARTICLE
Rachal M Allison, Dominic J Johnson, Matthew J Neale, Stephen Gray
DNA double-strand break (DSB) repair by homologous recombination (HR) uses a DNA template with similar sequence to restore genetic identity. Allelic DNA repair templates can be found on the sister chromatid or homologous chromosome. During meiotic recombination, DSBs preferentially repair from the homologous chromosome, with a proportion of HR events generating crossovers. Nevertheless, regions of similar DNA sequence exist throughout the genome, providing potential DNA repair templates. When DSB repair occurs at these non-allelic loci (termed ectopic recombination), chromosomal duplications, deletions and rearrangements can arise...
August 7, 2023: Nucleic Acids Research
https://read.qxmd.com/read/37497444/three-color-dstorm-imaging-and-analysis-of-recombination-foci-in-mouse-spread-meiotic-nuclei
#20
JOURNAL ARTICLE
Lieke Koornneef, Maarten W Paul, Adriaan B Houtsmuller, Willy M Baarends, Johan A Slotman
During the first meiotic prophase in mouse, repair of SPO11-induced DNA double-strand breaks (DSBs), facilitating homologous chromosome synapsis, is essential to successfully complete the first meiotic cell division. Recombinases RAD51 and DMC1 play an important role in homology search, but their mechanistic contribution to this process is not fully understood. Super-resolution, single-molecule imaging of RAD51 and DMC1 provides detailed information on recombinase accumulation on DSBs during meiotic prophase...
July 20, 2023: Bio-protocol
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