keyword
https://read.qxmd.com/read/38567257/complete-genome-sequence-analysis-of-bacillus-subtilis-mc4-2-strain-that-against-tobacco-black-shank-disease
#1
JOURNAL ARTICLE
Chunlan Shi, Shuquan Zeng, Xi Gao, Mehboob Hussain, Mingchuan He, Xurong Niu, Congcong Wei, Rui Yang, Mingxian Lan, Yonghui Xie, Zhijiang Wang, Guoxing Wu, Ping Tang
The MC4-2 bacterium strain was isolated and purified from the Periplaneta americana intestine as a biocontrol agent with good antagonistic effect against the pathogens of a soil-borne disease called tobacco black shank. The MC4-2 strain was found to have good broad-spectrum inhibition by plate stand-off test. Based on 16S rRNA and gyrB genes, ANI analysis, and other comparative genomics methods, it was determined that the MC4-2 strain was Bacillus subtilis . The complete genome sequence showed that the genome size was 4,076,630 bp, the average GC content was 43...
2024: International Journal of Genomics
https://read.qxmd.com/read/38401001/perception-of-the-biocontrol-potential-and-palmitic-acid-biosynthesis-pathway-of-bacillus-subtilis-h2-through-merging-genome-mining-with-chemical-analysis
#2
JOURNAL ARTICLE
Hang Pan, Longfeng Wei, Hao Zhao, Yang Xiao, Zhu Li, Haixia Ding
Bacillus has been widely studied for its potential to protect plants from pathogens. Here, we report the whole genome sequence of Bacillus subtilis H2, which was isolated from the tea garden soil of Guiyang Forest Park. Strain H2 showed a broad spectrum of antagonistic activities against many plant fungal pathogens and bacteria pathogens, including the rice blast fungus Magnaporthe oryzae , and showed a good field control effect against rice blast. The complete genome of B. subtilis H2 contained a 4,160,635-bp circular chromosome, with an average G + C content of 43...
February 24, 2024: Journal of Agricultural and Food Chemistry
https://read.qxmd.com/read/38327855/co-production-of-surfactin-and-fengycin-by-bacillus-subtilis-bbw1542-isolated-from-marine-sediment-a-promising-biocontrol-agent-against-foodborne-pathogens
#3
JOURNAL ARTICLE
Luqi Yan, Ganghui Li, Yingyin Liang, Minghui Tan, Jianhao Fang, Jieying Peng, Kuntai Li
UNLABELLED: Pathogenic bacteria contaminations and related diseases in food industries is an urgent issue to solve. The present study aimed to explore natural food biopreservatives from microorganisms. Using dilution-plate method, a strain BBW1542 with antimicrobial activities against various foodborne pathogenic bacteria was isolated from the seabed silt of Beibu Gulf, which was identified as Bacillus subtilis by the morphological observation and 16S rDNA sequences. The antimicrobial substances of B...
March 2024: Journal of Food Science and Technology
https://read.qxmd.com/read/38103009/insights-into-genomic-features-and-potential-biotechnological-applications-of-bacillus-halotolerans-strain-hgr5
#4
JOURNAL ARTICLE
Bilal Yahiaoui, Hadjira Bounabi, Amine M Boukerb, Meriem Gasmi
Algeria is one of the wealthiest countries in terms of hydrothermal sources, with more than two hundred hot springs. However, diverse and little-described microbial communities colonize these habitats, making them an intriguing research subject. This work reports the isolation of bacteria from two hot springs water samples in northeastern Algeria, evaluating their enzymatic activities and effect on plant pathogens. Out of the obtained 72 bacterial isolates and based on the 16S rRNA gene sequence analysis, the strain HGR5 belonging to Bacillus halotolerans had the most interesting activity profile...
December 1, 2023: Polish Journal of Microbiology
https://read.qxmd.com/read/37840708/genomic-insights-into-antimicrobial-potential-and-optimization-of-fermentation-conditions-of-pig-derived-bacillus-subtilis-bs21
#5
JOURNAL ARTICLE
Di Wu, Linglong Fu, Yunhe Cao, Na Dong, Defa Li
Bacillus spp. have been widely used as probiotic supplements in animal feed as alternatives to antibiotics. In the present study, we screened a Bacillus subtilis strain named BS21 from pig feces. Antimicrobial activities, whole genome mining and UHPLC-MS/MS analysis were used to explore its antimicrobial mechanism. Strain BS21 showed Significant growth inhibition against a variety of animal pathogens, including Escherichia coli , Salmonella enterica Pullorum , Salmonella enterica Typhimurium , Citrobacter rodentium , Shigella flexneri and Staphylococcus aureus ...
2023: Frontiers in Microbiology
https://read.qxmd.com/read/37817491/evaluation-and-genome-mining-of-bacillus-stercoris-isolate-b-pnr1-as-potential-agent-for-fusarium-wilt-control-and-growth-promotion-of-tomato
#6
JOURNAL ARTICLE
Rattana Pengproh, Thanwanit Thanyasiriwat, Kusavadee Sangdee, Juthaporn Saengprajak, Praphat Kawicha, Aphidech Sangdee
Recently, strategies for controlling Fusarium oxysporum f. sp. lycopersici (Fol), the causal agent of Fusarium wilt of tomato, focus on using effective biocontrol agents. In this study, an analysis of the biocontrol and plant growth promoting (PGP) attributes of 11 isolates of loamy soil Bacillus spp. has been conducted. Among them, the isolates B.PNR1 and B.PNR2 inhibited the mycelial growth of Fol by inducing abnormal fungal cell wall structures and cell wall collapse. Moreover, broad-spectrum activity against four other plant pathogenic fungi, F...
October 2023: Plant Pathology Journal
https://read.qxmd.com/read/37762026/examining-the-transcriptomic-and-biochemical-signatures-of-bacillus-subtilis-strains-impacts-on-plant-growth-and-abiotic-stress-tolerance
#7
JOURNAL ARTICLE
Peter E Chang, Yun-Hsiang Wu, Ciao-Yun Tai, I-Hung Lin, Wen-Der Wang, Tong-Seung Tseng, Huey-Wen Chuang
Rhizobacteria from various ecological niches display variations in physiological characteristics. This study investigates the transcriptome profiling of two Bacillus subtilis strains, BsCP1 and BsPG1, each isolated from distinct environments. Gene expression linked to the synthesis of seven types of antibiotic compounds was detected in both BsCP1 and BsPG1 cultures. Among these, the genes associated with plipastatin synthesis were predominantly expressed in both bacterial strains. However, genes responsible for the synthesis of polyketide, subtilosin, and surfactin showed distinct transcriptional patterns...
September 6, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37665371/whole-genome-sequencing-and-antimicrobial-potential-of-bacteria-isolated-from-polish-honey
#8
JOURNAL ARTICLE
Ahmer Bin Hafeez, Karolina Pełka, Kamila Buzun, Randy Worobo, Piotr Szweda
The aim of this study was the whole-genome analysis and assessment of the antimicrobial potential of bacterial isolates from honey harvested in one geographical location-the north of Poland. In total, 132 strains were derived from three honey samples, and the antimicrobial activity of CFAM (cell-free after-culture medium) was used as a criterion for strain selection and detailed genomic investigation. Two of the tested isolates (SZA14 and SZA16) were classified as Bacillus paralicheniformis, and one isolate (SZB3) as Bacillus subtilis based on their ANI and phylogenetic analysis relatedness...
September 4, 2023: Applied Microbiology and Biotechnology
https://read.qxmd.com/read/37366658/-bacillus-strains-isolated-from-korean-fermented-food-products-with-antimicrobial-activity-against-staphylococci-an-alternative-for-control-of-antibiotic-resistant-pathogens
#9
JOURNAL ARTICLE
Jeemin Ye, Joanna Ivy Irorita Fugaban, Clarizza May Dioso, Jorge Enrique Vazquez Bucheli, Gee-Hyeun Choi, Bobae Kim, Wilhelm Heinrich Holzapfel, Svetoslav Dimitrov Todorov
Multidrug resistance in foodborne and clinical pathogens is a worldwide health problem. The urgent need for new alternatives to the existing antibiotics is emerging. Bacteriocin-like inhibitory substances can be considered part of the new generation of antimicrobials, which can be potentially applied in the food industry and health care practices. This study aimed to select Bacillus strains with antimicrobial activity against Staphylococcus spp. with future application in the formulation of pharmaceutical antimicrobial preparations...
June 27, 2023: Foodborne Pathogens and Disease
https://read.qxmd.com/read/37293250/complete-genome-sequencing-of-bacillus-cabrialesii-te3-t-a-plant-growth-promoting-and-biological-control-agent-isolated-from-wheat-triticum-turgidum-subsp-durum-in-the-yaqui-valley
#10
JOURNAL ARTICLE
Valeria Valenzuela Ruiz, Gustavo Santoyo, Lorena Jacqueline Gómez Godínez, Luis A Cira Chávez, Fannie I Parra Cota, Sergio de Los Santos Villalobos
Bacillus cabrialesii TE3T is a strictly aerobic and Gram-stain-positive plant growth-promoting bacterium, motile and catalase-positive. In addition, strain TE3T was also recently described as a biological control agent. Here, we present the complete circularized genome of this type strain, as well as a whole genome analysis identifying genes of agricultural interest. Thus, a hybrid assembly method was performed using short-read sequencing through the Illumina MiSeq platform, and long-read sequencing through the MinION sequencing technology by Oxford Nanopore Technology (ONT)...
2023: Current research in microbial sciences
https://read.qxmd.com/read/37103735/discovering-potential-bacteriocins-against-pseudomonas-fragi-a-subtractive-proteomics-and-molecular-dynamic-simulation-study-for-food-preservation
#11
JOURNAL ARTICLE
Maria Azhar, Maha Yousaf, Saima Maher, M Qaiser Fatmi
Food preservation is a schematic and scientific procedure employed for the maintenance and improvement of food's quality, shelf life, and nutritional value. Although, on one hand, ancient conventional methods such as freezing, pasteurization, canning, and chemical methods have the potential to lengthen the shelf life of edible substances, but on the other hand, they can deteriorate its nutritional value as well. Present research focuses on the identification of promising bacteriocins against Pseudomonas fragi via subtractive proteomics pipeline as an alternative approach for food preservation...
April 27, 2023: Applied Biochemistry and Biotechnology
https://read.qxmd.com/read/37051516/the-genome-of-bacillus-tequilensis-ea-cb0015-sheds-light-into-its-epiphytic-lifestyle-and-potential-as-a-biocontrol-agent
#12
JOURNAL ARTICLE
Tatiana Z Cuellar-Gaviria, Camilo García-Botero, Kou-San Ju, Valeska Villegas-Escobar
Different Bacillus species have successfully been used as biopesticides against a broad range of plant pathogens. Among these, Bacillus tequilensis EA-CB0015 has shown to efficiently control Black sigatoka disease in banana plants, presumably by mechanisms of adaptation that involve modifying the phyllosphere environment. Here, we report the complete genome of strain EA-CB0015, its precise taxonomic identity, and determined key genetic features that may contribute to its effective biocontrol of plant pathogens...
2023: Frontiers in Microbiology
https://read.qxmd.com/read/36671765/new-bacillus-subtilis-strains-isolated-from-prosopis-glandulosa-rhizosphere-for-suppressing-fusarium-spp-and-enhancing-growth-of-gossypium-hirsutum-l
#13
JOURNAL ARTICLE
Ali Abdelmoteleb, Lizbeth Moreno-Ramírez, Benjamín Valdez-Salas, Mahmoud F Seleiman, Salah El-Hendawy, Khalid J Aldhuwaib, Majed Alotaibi, Daniel González-Mendoza
Rhizobacteria from desert plants can alleviate biotic stress and suppress plant diseases, and consequently can enhance plant growth. Therefore, the current study was performed to isolate and identify Prosopis glandulosa -associating rhizobacteria based on their antagonistic activity against Fusarium species and plant growth-promoting properties. Three bacterial isolates were identified as Bacillus subtilis : LDA-1, LDA-2, and LDA-3. The molecular analysis suggests the biosynthesis of the bacteriocins subtilisin and subtilosin, as well as the lipopeptide iturin, by these strains...
December 31, 2022: Biology
https://read.qxmd.com/read/36532498/biocontrol-potential-of-bacillus-subtilis-ctxw-7-6-2-against-kiwifruit-soft-rot-pathogens-revealed-by-whole-genome-sequencing-and-biochemical-characterisation
#14
JOURNAL ARTICLE
Tingting Chen, Zhuzhu Zhang, Wenzhi Li, Jia Chen, Xuetang Chen, Bince Wang, Jiling Ma, Yunyun Dai, Haixia Ding, Weizhen Wang, Youhua Long
Soft rot causes significant economic losses in the kiwifruit industry. This study isolated strain CTXW 7-6-2 from healthy kiwifruit tissue; this was a gram-positive bacterium that produced the red pigment pulcherrimin. The phylogenetic tree based on 16S ribosomal RNA, gyrA, rpoB , and purH gene sequences identified CTXW 7-6-2 as a strain of Bacillus subtilis . CTXW 7-6-2 inhibited hyphal growth of pathogenic fungi that cause kiwifruit soft rot, namely, Botryosphaeria dothidea , Phomopsis sp., and Alternaria alternata , by 81...
2022: Frontiers in Microbiology
https://read.qxmd.com/read/36310361/identification-and-characterization-of-a-bacteriocin-from-the-newly-isolated-bacillus-subtilis-hd15-with-inhibitory-effects-against-bacillus-cereus
#15
JOURNAL ARTICLE
Sung Wook Hong, Jong-Hui Kim, Hyun A Cha, Kun Sub Chung, Hyo Ju Bae, Won Seo Park, Jun-Sang Ham, Beom-Young Park, Mi-Hwa Oh
Natural antimicrobial substances are needed as alternatives to synthetic antimicrobials to protect against foodborne pathogens. In this study, a bacteriocin-producing bacterium, Bacillus subtilis HD15, was isolated from doenjang, a traditional Korean fermented soybean paste. We sequenced the complete genome of B. subtilis HD15. This genome size was 4,173,431 bp with a G + C content of of 43.58%, 4,305 genes, and 4,222 protein-coding genes with predicted functions, including a subtilosin A gene cluster. The bacteriocin was purified by ammonium sulfate precipitation, Diethylaminoethanol-Sepharose chromatography, and Sephacryl gel filtration, with 12...
October 14, 2022: Journal of Microbiology and Biotechnology
https://read.qxmd.com/read/36302388/crystal-structure-of-the-albef-complex-involved-in-subtilosin-a-biosynthesis
#16
JOURNAL ARTICLE
Kohki Ishida, Akira Nakamura, Shuichi Kojima
Subtilosin A is a sactipeptide bacteriocin produced by Bacillus subtilis strain 168, containing intramolecular thioether bonds and a head-to-tail macrocyclic peptide bond. Macrocyclization is presumably catalyzed by AlbE and AlbF proteins encoded by the subtilosin A biosynthesis gene cluster. However, the underlying mechanism of macrocyclization remains uncertain as the tertiary structures of the proteins are undetermined. Here, we report the crystal structures of AlbE and AlbF homologs in Quasibacillus thermotolerans, wherein the subtilosin biosynthesis gene cluster is highly conserved...
October 18, 2022: Structure
https://read.qxmd.com/read/36049110/sactipeptide-engineering-by-probing-the-substrate-tolerance-of-a-thioether-bond-forming-sactisynthase
#17
JOURNAL ARTICLE
Ataurehman Ali, Dominic Happel, Jan Habermann, Katrin Schoenfeld, Arturo Macarrón Palacios, Sebastian Bitsch, Simon Englert, Hendrik Schneider, Olga Avrutina, Sebastian Fabritz, Harald Kolmar
Sactipeptides are ribosomally synthesized peptides containing a unique sulfur to α-carbon crosslink. Catalyzed by sactisynthases, this thioether pattern endows sactipeptides with enhanced structural, thermal, and proteolytic stability, which makes them attractive scaffolds for the development of novel biotherapeutics. Herein, we report the in-depth study on the substrate tolerance of the sactisynthase AlbA to catalyze the formation of thioether bridges in sactipeptides. We identified a possible modification site within the sactipeptide subtilosin A allowing for peptide engineering without compromising formation of thioether bridges...
September 1, 2022: Angewandte Chemie
https://read.qxmd.com/read/35935203/antifungal-activity-of-endophytic-bacillus-k1-against-botrytis-cinerea
#18
JOURNAL ARTICLE
Peiqian Li, Baozhen Feng, Zhen Yao, Bohui Wei, Yanfei Zhao, Shouguo Shi
Gray mold caused by Botrytis cinerea is detrimental to plants and fruits. Endophytes have been shown to modify plant disease severity in functional assays. We conducted this study to investigate the endophytic strain Bacillus K1 with excellently antagonistic B. cinerea from the wild grape endosphere. We identified a wild grape endophytic strain K1 with high antifungal activity against B. cinerea both in vitro and in vivo . Combining the phylogenetic results based on 16S rDNA and genome sequencing, K1 was assigned as Bacillus subtilis ...
2022: Frontiers in Microbiology
https://read.qxmd.com/read/35902452/antibiotic-profiling-of-wild-type-bacilli-led-to-the-discovery-of-new-lanthipeptide-subtilin-producing-bacillus-spizizenii-strains-whose-16s-rdna-sequences-differ-from-the-b-spizizenii-typing-strain
#19
JOURNAL ARTICLE
Markus Helfrich, Karl-Dieter Entian, Torsten Stein
Two dozen field-collected Bacillus and a dozen Bacillus spizizenii wild-type strains from strain collections were selected on the basis of their antagonistic properties against the Gram-positive strain Micrococcus luteus. Based on their genetic and antibiotic profiles, they were characterized (subtilin encoding spaS gene sequences, mass spectrometric, and quantitative-reversed phase liquid chromatographic analyses, as well as the presence of the lanthionine cyclase protein SpaC by western blotting), seven novel producers of the lanthipeptide subtilin...
July 28, 2022: International Microbiology: the Official Journal of the Spanish Society for Microbiology
https://read.qxmd.com/read/35805288/%C3%AE-polyglutamic-acid-production-biocontrol-and-stress-tolerance-multifunction-of-bacillus-subtilis-a-5-and-the-complete-genome-analysis
#20
JOURNAL ARTICLE
Naling Bai, Yu He, Hanlin Zhang, Xianqing Zheng, Rong Zeng, Yi Li, Shuangxi Li, Weiguang Lv
Bacillus subtilis A-5 has the capabilities of high-molecular-weight γ-PGA production, antagonism to plant pathogenic fungi, and salt/alkaline tolerance. This multifunctional bacterium has great potential for enhancing soil fertility and plant security in agricultural ecosystem. The genome size of B. subtilis A-5 was 4,190,775 bp, containing 1 Chr and 2 plasmids (pA and pB) with 43.37% guanine-cytosine content and 4605 coding sequences. The γ-PGA synthase gene cluster was predicted to consist of pgsBCA and factor ( pgsE )...
June 22, 2022: International Journal of Environmental Research and Public Health
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