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Temporal patterning

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https://www.readbyqxmd.com/read/28813026/breath-figure-self-assembly-a-versatile-method-of-manufacturing-membranes-and-porous-structures-physical-chemical-and-technological-aspects
#1
REVIEW
Edward Bormashenko
The review is devoted to the physical, chemical, and technological aspects of the breath-figure self-assembly process. The main stages of the process and impact of the polymer architecture and physical parameters of breath-figure self-assembly on the eventual pattern are covered. The review is focused on the hierarchy of spatial and temporal scales inherent to breath-figure self-assembly. Multi-scale patterns arising from the process are addressed. The characteristic spatial lateral scales of patterns vary from nanometers to dozens of micrometers...
August 16, 2017: Membranes
https://www.readbyqxmd.com/read/28812976/learning-and-recognition-of-tactile-temporal-sequences-by-mice-and-humans
#2
Michael R Bale, Malamati Bitzidou, Anna Pitas, Leonie S Brebner, Lina Khazim, Stavros T Anagnou, Caitlin D Stevenson, Miguel Maravall
The world around us is replete with stimuli that unfold over time. When we hear an auditory stream like music or speech or scan a texture with our fingertip, physical features in the stimulus are concatenated in a particular order. This temporal patterning is critical to interpreting the stimulus. To explore the capacity of mice and humans to learn tactile sequences, we developed a task in which subjects had to recognise a continuous modulated noise sequence delivered to whiskers or fingertips, defined by its temporal patterning over hundreds of milliseconds...
August 16, 2017: ELife
https://www.readbyqxmd.com/read/28812611/divergent-demographic-strategies-of-plants-in-variable-environments
#3
Jenni L McDonald, Miguel Franco, Stuart Townley, Thomas H G Ezard, Kim Jelbert, Dave J Hodgson
One of the best-supported patterns in life history evolution is that organisms cope with environmental fluctuations by buffering their most important vital rates against them. This demographic buffering hypothesis is evidenced by a tendency for temporal variation in rates of survival and reproduction to correlate negatively with their contribution to fitness. Here, we show that widespread evidence for demographic buffering can be artefactual, resulting from natural relationships between the mean and variance of vital rates...
January 13, 2017: Nature ecology & evolution
https://www.readbyqxmd.com/read/28812323/a-comparison-of-methods-for-estimating-the-temporal-change-in-a-continuous-variable-example-of-hba1c-in-patients-with-diabetes
#4
Therese Sheppard, Robyn Tamblyn, Michal Abrahamowicz, Mark Lunt, Matthew Sperrin, William G Dixon
PURPOSE: To compare the more complex technique, functional principal component analysis (FPCA), to simpler methods of estimating values of sparse and irregularly spaced continuous variables at given time points in longitudinal data using a diabetic patient cohort from UK primary care. METHODS: The setting for this study is the Clinical Practice Research Datalink (CPRD), a UK general practice research database. For 16,034 diabetic patients identified in CPRD, with at least 2 measures in a 30-month period, HbA1c was estimated after temporarily omitting (i) the final and (ii) middle known values using linear interpolation, simple linear regression, arithmetic mean, random effects, and FPCA...
August 15, 2017: Pharmacoepidemiology and Drug Safety
https://www.readbyqxmd.com/read/28812091/influence-of-surface-tension-in-the-surfactant-driven-fracture-of-closely-packed-particulate-monolayers
#5
Christian Peco, Wei Chen, Yingjie Liu, M M Bandi, John E Dolbow, Eliot Fried
A phase-field model is used to capture the surfactant-driven formation of fracture patterns in particulate monolayers. The model is intended for the regime of closely-packed systems in which the mechanical response of the monolayer can be approximated as that of a linearly elastic solid. The model approximates the loss in tensile strength of the monolayer with increasing surfactant concentration through the evolution of a damage field. Initial-boundary value problems are constructed and spatially discretized with finite element approximations to the displacement and surfactant damage fields...
August 16, 2017: Soft Matter
https://www.readbyqxmd.com/read/28811662/fractal-properties-of-shoreline-changes-on-a-storm-exposed-island
#6
Xiaojing Zhong, Peng Yu, Shenliang Chen
Extreme storm events and their consequent shoreline changes are of great importance for understanding coastal evolution and assessing storm hazards. This work investigates the fractal properties of the spatial distributions of shoreline changes caused by storms. Wavelet analysis and upper-truncated power law (UTPL) fitting are used to study the power spectra of shoreline changes and to evaluate the upper limits of the cross-shore erosion and accretion. During a period affected by storms, the alongshore shoreline change patterns are strong on the 15 km scale but are weak with lower spectral power on the 20 km scale...
August 15, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28811510/temporal-changes-in-the-radiocesium-distribution-in-forests-over-the-five-years-after-the-fukushima-daiichi-nuclear-power-plant-accident
#7
Naohiro Imamura, Masabumi Komatsu, Shinta Ohashi, Shoji Hashimoto, Takuya Kajimoto, Shinji Kaneko, Tsutomu Takano
To elucidate the temporal changes in the radiocesium distribution in forests contaminated by the Fukushima Daiichi Nuclear Power Plant accident, we monitored the (137)Cs concentration and inventory within forests from 2011 to 2015 across nine plots containing variable tree species and different contamination levels. The (137)Cs concentrations in needles and branches decreased exponentially at all coniferous plots, with effective ecological half-lives of 0.45-1.55 yr for needles and 0.83-1.69 yr for branches...
August 15, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28810828/suitable-reference-gene-for-quantitative-real-time-pcr-analysis-of-gene-expression-in-gonadal-tissues-of-minnow-puntius-sophore-under-high-temperature-stress
#8
Arabinda Mahanty, Gopal Krishna Purohit, Sasmita Mohanty, Nihar Ranjan Nayak, Bimal Prasanna Mohanty
BACKGROUND: High ambient temperature is known to affect fish gonadal development and physiology in a variety of ways depending on the severity and duration of exposure; however, the underlying molecular mechanisms are poorly understood. Gonadal gene expression influence the gonadal development, physiology and the quality of egg/sperm produced in teleosts and the mechanistic understanding of spatio-temporal changes in the gonadal gene expression could be instrumental in controlling the fate of egg/sperm and the quality of seed produced...
August 15, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28810707/seasonal-and-spatial-variations-of-prokaryoplankton-communities-in-a-salinity-influenced-watershed-china
#9
Anyi Hu, Hongjie Wang, Xiaoyang Yang, Liyuan Hou, Jiangwei Li, Shuang Li, Chang-Ping Yu
Prokaryotes represent the largest biodiversity pool and drive the biogeochemical cycles in fluvial environments. However, the mechanisms underlying the assembly of prokaryotic communities are largely unexplored at taxonomic and functional levels, simultaneously. Here, we investigated the spatio-seasonal distribution of prokaryoplankton communities in a salinity-influenced watershed, China using 16S rRNA gene amplicon sequencing. The OTUs were divided into core and satellite, based on a statistical approach...
August 1, 2017: FEMS Microbiology Ecology
https://www.readbyqxmd.com/read/28810507/landscape-determinants-of-spatio-temporal-patterns-of-aerosol-optical-depth-in-the-two-most-polluted-metropolitans-in-the-united-states
#10
Chenghao Wang, Chuyuan Wang, Soe W Myint, Zhi-Hua Wang
Elevated concentration of atmospheric aerosols during severe urban air pollution episodes necessitates a deep understanding of the underlying determinants for a sustainable urban environment. The 15-year (2001-2015) Moderate Resolution Imaging Spectroradiometer (MODIS) aerosol optical depth (AOD) data for the Phoenix and Los Angeles Metropolitan Areas were applied to examine the spatio-temporal patterns and dynamics of urban aerosols. The strongly correlated temporal trends of AOD were observed due to the similar seasonal pattern of aerosol emissions and potential synoptic connections between two areas...
August 8, 2017: Science of the Total Environment
https://www.readbyqxmd.com/read/28809937/understanding-large-scale-long-term-larval-connectivity-patterns-the-case-of-the-northern-line-islands-in-the-central-pacific-ocean
#11
Lorenzo Mari, Luca Bonaventura, Andrea Storto, Paco Melià, Marino Gatto, Simona Masina, Renato Casagrandi
Protecting key hotspots of marine biodiversity is essential to maintain ecosystem services at large spatial scales. Protected areas serve not only as sources of propagules colonizing other habitats, but also as receptors, thus acting as protected nurseries. To quantify the geographical extent and the temporal persistence of ecological benefits resulting from protection, we investigate larval connectivity within a remote archipelago, characterized by a strong spatial gradient of human impact from pristine to heavily exploited: the Northern Line Islands (NLIs), including part of the Pacific Remote Islands Marine National Monument (PRI-MNM)...
2017: PloS One
https://www.readbyqxmd.com/read/28809861/high-frequency-measurement-of-depressive-severity-in-a-patient-treated-for-severe-treatment-resistant-depression-with-deep-brain-stimulation
#12
S Sani, J Busnello, R Kochanski, Y Cohen, R D Gibbons
Although there have been previous studies of deep-brain stimulation (DBS), we present, to our knowledge, the first example of high-frequency depressive severity measurement-based DBS treatment in particular and psychiatric treatment in general. Daily post-surgical e-mail prompts for a period of 6 months resulted in 93 administrations of a computerized adaptive test (CAT) of depression severity (CAT-Depression Inventory or CAT-DI) via the internet. There was an average of 3.37 weekly measurements with an average separation of 2...
August 15, 2017: Translational Psychiatry
https://www.readbyqxmd.com/read/28809201/secondary-use-of-ehr-interpreting-clinician-inter-rater-reliability-through-qualitative-assessment
#13
Sarah Mullin, Edwin Anand, Shyamashree Sinha, Buer Song, Jane Zhao, Peter L Elkin
In a retrospective secondary-use EHR study identifying a cohort of Non-Valvular Atrial Fibrillation (NVAF) patients, chart abstraction was done by two sets of clinicians to create a gold standard for risk measures CHA2DS2-VASc and HAS-BLED. Inter-rater reliability between each set of clinicians for NVAF and the outcomes of interest were variable, ranging from extremely low agreement to high agreement. To assess the chart abstraction process, a focus group and a survey was conducted. Survey findings revealed patterns of difficulty in assessing certain items dealing with temporality and social data...
2017: Studies in Health Technology and Informatics
https://www.readbyqxmd.com/read/28809033/somitogenesis-and-axial-development-in-reptiles
#14
Cindy Xu, Mariana B Grizante, Kenro Kusumi
Among amniote vertebrates, reptiles display the greatest variation in axial skeleton morphology. Only recently have they been used in gene expression studies of somitogenesis , challenging previous assumptions about the segmentation clock and axial patterning. An increasing number of reptile genomes and transcriptomes are becoming available as next-generation sequencing becomes more affordable. Information regarding gene sequence and structure can be used to design and synthesize labeled riboprobes by in vitro transcription for gene expression analysis by in situ hybridization, thus, enabling the characterization of spatial and temporal expression patterns of genes involved in somitogenesis, a topic of great interest within evolutionary developmental studies of vertebrates...
2017: Methods in Molecular Biology
https://www.readbyqxmd.com/read/28808617/a-novel-method-of-quantifying-brain-atrophy-associated-with-age-related-hearing-loss
#15
Z Jason Qian, Peter D Chang, Gul Moonis, Anil K Lalwani
A growing body of evidence has shown that a relationship between age-related hearing loss and structural brain changes exists. However, a method to measure brain atrophy associated with hearing loss from a single MRI study (i.e. without an interval study) that produces an independently interpretable output does not. Such a method would be beneficial for studying patterns of structural brain changes on a large scale. Here, we introduce our method for this. Audiometric evaluations and mini-mental state exams were obtained in 34 subjects over the age of 80 who have had brain MRIs in the past 6 years...
2017: NeuroImage: Clinical
https://www.readbyqxmd.com/read/28808240/micro-epidemiology-and-spatial-heterogeneity-of-p-vivax-parasitaemia-in-riverine-communities-of-the-peruvian-amazon-a-multilevel-analysis
#16
Gabriel Carrasco-Escobar, Dionicia Gamboa, Marcia C Castro, Shrikant I Bangdiwala, Hugo Rodriguez, Juan Contreras-Mancilla, Freddy Alava, Niko Speybroeck, Andres G Lescano, Joseph M Vinetz, Angel Rosas-Aguirre, Alejandro Llanos-Cuentas
Malaria has steadily increased in the Peruvian Amazon over the last five years. This study aimed to determine the parasite prevalence and micro-geographical heterogeneity of Plasmodium vivax parasitaemia in communities of the Peruvian Amazon. Four cross-sectional active case detection surveys were conducted between May and July 2015 in four riverine communities in Mazan district. Analysis of 2785 samples of 820 individuals nested within 154 households for Plasmodium parasitaemia was carried out using light microscopy and qPCR...
August 14, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28808066/maternal-mrnas-with-distinct-3-utrs-define-the-temporal-pattern-of-ccnb1-synthesis-during-mouse-oocyte-meiotic-maturation
#17
Ye Yang, Cai-Rong Yang, Seung Jin Han, Enrico Maria Daldello, Ara Cho, Joao P Sousa Martins, Guoliang Xia, Marco Conti
The final stages of female gamete maturation occur in the virtual absence of transcription, with gene expression driven by a program of selective unmasking, translation, and degradation of maternal mRNAs. Here we demonstrate that the timing of Ccnb1 mRNA translation in mouse oocytes is dependent on the presence of transcripts with different 3' untranslated regions (UTRs). This 3' UTR heterogeneity directs distinct temporal patterns of translational activation or repression. Inclusion or exclusion of cis-acting elements is responsible for these divergent regulations...
July 1, 2017: Genes & Development
https://www.readbyqxmd.com/read/28807903/transgelin-expressing-myofibroblasts-orchestrate-ventral-midline-closure-through-tgf-%C3%AE-signalling
#18
Bashar Aldeiri, Urmas Roostalu, Alessandra Albertini, Jason Wong, Antonino Morabito, Giulio Cossu
Ventral body wall (VBW) defects are among the most common congenital malformations, yet their embryonic origin and underlying molecular mechanisms have remained poorly characterized. Although transforming growth factor beta (TGF-β) signalling is essential for VBW closure the responding cells are not known. Here we identify a population of migratory myofibroblasts at the leading edge of the closing VBW that express the actin-binding protein Transgelin (TAGLN) and TGF-β receptor (TGFβR). These cells respond to a temporally regulated TGF-β2 gradient originating from the epithelium of the primary body wall...
August 14, 2017: Development
https://www.readbyqxmd.com/read/28807900/heart-morphogenesis-gene-regulatory-networks-revealed-by-temporal-expression-analysis
#19
Jonathon T Hill, Bradley Demarest, Megan Smith, Bushra Gorsi, H Joseph Yost
During embryogenesis, the heart forms as a linear tube that then undergoes multiple simultaneous morphogenetic events to obtain its mature shape. To understand the gene regulatory networks (GRNs) driving this phase of heart development, during which many congenital heart disease malformations likely arise, we conducted an RNA-seq time course in zebrafish from 30 hpf to 72 hpf and identified 5,861 genes with altered expression. We then clustered the genes by temporal expression pattern, identified transcription factor binding motifs enriched in each cluster, and generated a model GRN for the major gene batteries in heart morphogenesis...
August 14, 2017: Development
https://www.readbyqxmd.com/read/28807871/mentalizing-regions-represent-distributed-continuous-and-abstract-dimensions-of-others-beliefs
#20
Jorie Koster-Hale, Hilary Richardson, Natalia Velez, Mika Asaba, Liane Young, Rebecca Saxe
The human capacity to reason about others' minds includes making causal inferences about intentions, beliefs, values, and goals. Previous fMRI research has suggested that a network of brain regions, including bilateral temporo-parietal junction (TPJ), superior temporal sulcus (STS), and medial prefrontal-cortex (MPFC), are reliably recruited for mental state reasoning. Here, in two fMRI experiments, we investigate the representational content of these regions. Building on existing computational and neural evidence, we hypothesized that social brain regions contain at least two functionally and spatially distinct components: one that represents information related to others' motivations and values, and another that represents information about others' beliefs and knowledge...
August 11, 2017: NeuroImage
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