keyword
https://read.qxmd.com/read/38547084/raising-awareness-of-uncertain-choices-in-empirical-data-analysis-a-teaching-concept-toward-replicable-research-practices
#21
JOURNAL ARTICLE
Maximilian M Mandl, Sabine Hoffmann, Sebastian Bieringer, Anna E Jacob, Marie Kraft, Simon Lemster, Anne-Laure Boulesteix
Throughout their education and when reading the scientific literature, students may get the impression that there is a unique and correct analysis strategy for every data analysis task and that this analysis strategy will always yield a significant and noteworthy result. This expectation conflicts with a growing realization that there is a multiplicity of possible analysis strategies in empirical research, which will lead to overoptimism and nonreplicable research findings if it is combined with result-dependent selective reporting...
March 2024: PLoS Computational Biology
https://read.qxmd.com/read/38536589/inattentional-blindness-in-medicine
#22
REVIEW
Connor M Hults, Yifan Ding, Geneva G Xie, Rishi Raja, William Johnson, Alexis Lee, Daniel J Simons
People often fail to notice unexpected stimuli when their attention is directed elsewhere. Most studies of this "inattentional blindness" have been conducted using laboratory tasks with little connection to real-world performance. Medical case reports document examples of missed findings in radiographs and CT images, unintentionally retained guidewires following surgery, and additional conditions being overlooked after making initial diagnoses. These cases suggest that inattentional blindness might contribute to medical errors, but relatively few studies have directly examined inattentional blindness in realistic medical contexts...
March 27, 2024: Cognitive Research: Principles and Implications
https://read.qxmd.com/read/38531224/visual-cue-spatial-context-affects-performance-of-anticipatory-postural-adjustments
#23
JOURNAL ARTICLE
Jenna Pitman, Julia Shannon, Michael J MacLellan, Lori Ann Vallis
Past research indicates that anticipatory postural adjustment (APA) errors may be due to the incorrect selection of responses to visual stimuli. In the current study we used the Simon task as a methodological tool to challenge the response selection stage of processing by presenting visual cues with conflicting spatial context; in this case generating a step response to a left pointing arrow which appears to the participant's right side or vice versa. We expected greater mediolateral APA errors, delayed APA and step onset times, and greater lateral CoP displacement prior to stepping for visual cues with incongruent spatial contexts compared to cues with congruent...
March 25, 2024: Human Movement Science
https://read.qxmd.com/read/38531125/externally-orienting-cues-improve-cognitive-control-in-ocd
#24
JOURNAL ARTICLE
Lora Bednarek, Stephanie Glover, Xiao Ma, Christopher Pittenger, Helen Pushkarskaya
BACKGROUND AND OBJECTIVES: An executive overload model of obsessive-compulsive disorder (OCD) posits that broad difficulties with executive functioning in OCD result from an overload on the executive system by obsessive thoughts. It implies that, if individuals with OCD "snap out" of their obsessive thoughts, their performance on neurocognitive tasks will improve. METHODS: We test this prediction using the revised Attention Network Test, ANT-R, and distinct subsamples of data from unmedicated OCD and healthy controls (HC)...
March 14, 2024: Journal of Behavior Therapy and Experimental Psychiatry
https://read.qxmd.com/read/38530878/empathic-accuracy-in-individuals-with-schizotypal-personality-traits
#25
JOURNAL ARTICLE
Ding-Ding Hu, Xiao-Dong Guo, Hong Zheng, Chao Yan, Simon S Y Lui, Yan-Yu Wang, Yi Wang, Raymond C K Chan
Empirical research using the Empathic Accuracy Task (EAT) has suggested that schizophrenia patients and people with schizotypal personality disorder exhibit lower empathic accuracy than healthy people. However, empathic accuracy in a subclinical sample with high levels of schizotypy has seldom been studied. Our study aimed to investigate empathy in a subclinical sample using the Chinese version of the EAT and a self-report empathy measure. Forty participants with high levels of schizotypy (HS participants) and 40 with low levels of schizotypy (LS participants), as measured by the Schizotypal Personality Questionnaire (SPQ), were recruited...
March 26, 2024: PsyCh Journal
https://read.qxmd.com/read/38530621/semantic-stroop-interference-is-modulated-by-the-availability-of-executive-resources-insights-from-delta-plot-analyses-and-cognitive-load-manipulation
#26
JOURNAL ARTICLE
Simone Sulpizio, Giacomo Spinelli, Michele Scaltritti
We investigated whether, during visual word recognition, semantic processing is modulated by attentional control mechanisms directed at matching semantic information with task-relevant goals. In previous research, we analyzed the semantic Stroop interference as a function of response latency (delta-plot analyses) and found that this phenomenon mainly occurs in the slowest responses. Here, we investigated whether this pattern is due to reduced ability to proactively maintain the task goal in these slowest trials...
March 26, 2024: Memory & Cognition
https://read.qxmd.com/read/38523679/foundation-model-for-cancer-imaging-biomarkers
#27
JOURNAL ARTICLE
Suraj Pai, Dennis Bontempi, Ibrahim Hadzic, Vasco Prudente, Mateo Sokač, Tafadzwa L Chaunzwa, Simon Bernatz, Ahmed Hosny, Raymond H Mak, Nicolai J Birkbak, Hugo J W L Aerts
Foundation models in deep learning are characterized by a single large-scale model trained on vast amounts of data serving as the foundation for various downstream tasks. Foundation models are generally trained using self-supervised learning and excel in reducing the demand for training samples in downstream applications. This is especially important in medicine, where large labelled datasets are often scarce. Here, we developed a foundation model for cancer imaging biomarker discovery by training a convolutional encoder through self-supervised learning using a comprehensive dataset of 11,467 radiographic lesions...
2024: Nature Machine Intelligence
https://read.qxmd.com/read/38520130/triggered-by-your-heart-effects-of-cardioafferent-traffic-and-stress-on-automatic-responses-in-a-simon-task
#28
JOURNAL ARTICLE
Leon von Haugwitz, Edmund Wascher, Mauro F Larra
Variations in cardioafferent traffic are relayed to the brain via arterial baroreceptors and have been shown to modulate perceptual processing. However, less is known about the cognitive-behavioral consequences of these effects and their role during stress. Here, we investigated in how far automatic responses during the Simon task were modulated by exposure to a laboratory stressor and the different phases of the cardiac cycle. In this study, 30 participants performed three blocks of a combined horizontal and vertical Simon task, which is characterized by either sensorimotor or cognitive response conflicts, respectively...
March 22, 2024: Psychophysiology
https://read.qxmd.com/read/38514689/action-video-games-normalise-the-phonemic-awareness-in-pre-readers-at-risk-for-developmental-dyslexia
#29
JOURNAL ARTICLE
Sara Bertoni, Chiara Andreola, Sara Mascheretti, Sandro Franceschini, Milena Ruffino, Vittoria Trezzi, Massimo Molteni, Maria Enrica Sali, Antonio Salandi, Ombretta Gaggi, Claudio Palazzi, Simone Gori, Andrea Facoetti
Action video-games (AVGs) could improve reading efficiency, enhancing not only visual attention but also phonological processing. Here we tested the AVG effects upon three consolidated language-based predictors of reading development in a sample of 79 pre-readers at-risk and 41 non-at-risk for developmental dyslexia. At-risk children were impaired in either phonemic awareness (i.e., phoneme discrimination task), phonological working memory (i.e., pseudoword repetition task) or rapid automatized naming (i.e...
March 21, 2024: NPJ Science of Learning
https://read.qxmd.com/read/38512192/longitudinal-effects-of-prenatal-alcohol-exposure-on-visual-neurodevelopment-over-infancy
#30
JOURNAL ARTICLE
Emma T Margolis, Lauren Davel, Niall J Bourke, Cara Bosco, Michal R Zieff, Alexa D Monachino, Thandeka Mazubane, Simone R Williams, Marlie Miles, Chloë A Jacobs, Sadeeka Williams, Layla Bradford, Candice Knipe, Zamazimba Madi, Bokang Methola, Tembeka Mhlakwaphalwa, Nwabisa Mlandu, Khanyisa Nkubungu, Zayaan Goolam Nabi, Tracy Pan, Reese Samuels, Nicolò Pini, Vanja Klepac-Ceraj, William P Fifer, Daniel C Alexander, Derek K Jones, Steve C R Williams, Dima Amso, Kirsten A Donald, Laurel J Gabard-Durnam
Prenatal alcohol exposure (PAE) affects neurodevelopment in over 59 million individuals globally. Prior studies using dichotomous categorization of alcohol use and comorbid substance exposures provide limited knowledge of how prenatal alcohol specifically impacts early human neurodevelopment. In this longitudinal cohort study from Cape Town, South Africa, PAE is measured continuously-characterizing timing, dose, and drinking patterns (i.e., binge drinking). High-density electroencephalography (EEG) during a visual-evoked potential (VEP) task was collected from infants aged 8 to 52 weeks with prenatal exposure exclusively to alcohol and matched on sociodemographic factors to infants with no substance exposure in utero...
March 21, 2024: Developmental Psychology
https://read.qxmd.com/read/38506794/measuring-the-perception-and-metacognition-of-time
#31
JOURNAL ARTICLE
Simon J Cropper, Daniel R Little, Liheng Xu, Aurelio M Bruno, Alan Johnston
The ability of humans to identify and reproduce short time intervals (in the region of a second) may be affected by many factors ranging from the gender and personality of the individual observer, through the attentional state, to the precise spatiotemporal structure of the stimulus. The relative roles of these very different factors are a challenge to describe and define; several methodological approaches have been used to achieve this to varying degrees of success. Here we describe and model the results of a paradigm affording not only a first-order measurement of the perceived duration of an interval but also a second-order metacognitive judgement of perceived time...
March 1, 2024: Journal of Vision
https://read.qxmd.com/read/38506092/naturally-segregating-genetic-variants-contribute-to-thermal-tolerance-in-a-drosophila-melanogaster-model-system
#32
JOURNAL ARTICLE
Patricka A Williams-Simon, Camille Oster, Jordyn A Moaton, Ronel Ghidey, Enoch Ng'oma, Kevin M Middleton, Elizabeth G King
Thermal tolerance is a fundamental physiological complex trait for survival in many species. For example, everyday tasks such as foraging, finding a mate, and avoiding predation, are highly dependent on how well an organism can tolerate extreme temperatures. Understanding the general architecture of the natural variants within the genes that control this trait is of high importance if we want to better comprehend thermal physiology. Here, we take a multipronged approach to further dissect the genetic architecture that controls thermal tolerance in natural populations using the Drosophila Synthetic Population Resource (DSPR) as a model system...
March 20, 2024: Genetics
https://read.qxmd.com/read/38503288/anchored-fusion-enables-targeted-fusion-search-in-bulk-and-single-cell-rna-sequencing-data
#33
JOURNAL ARTICLE
Xilu Yuan, Haishuai Wang, Zhongquan Sun, Chunpeng Zhou, Simon Chong Chu, Jiajun Bu, Ning Shen
Here, we present Anchored-fusion, a highly sensitive fusion gene detection tool. It anchors a gene of interest, which often involves driver fusion events, and recovers non-unique matches of short-read sequences that are typically filtered out by conventional algorithms. In addition, Anchored-fusion contains a module based on a deep learning hierarchical structure that incorporates self-distillation learning (hierarchical view learning and distillation [HVLD]), which effectively filters out false positive chimeric fragments generated during sequencing while maintaining true fusion genes...
March 12, 2024: Cell Rep Methods
https://read.qxmd.com/read/38490802/how-surgeons-think-to-avoid-error-a-case-study-of-the-neurovascular-bundle-sparing-during-a-robotic-prostatectomy
#34
JOURNAL ARTICLE
Avril Lusty, Janet Alexanian, Simon Kitto, Tim Wood, Luke T Lavallée, Chris Morash, Ilias Cagiannos, Rodney H Breau, Isabelle Raîche
OBJECTIVE: To illustrate how experts efficiently navigate a "slowing down moment" to obtain optimal surgical outcomes using the neurovascular bundle sparing during a robotic prostatectomy as a case study. DESIGN: A series of semistructured interviews with four expert uro-oncologists were completed using a cognitive task analysis methodology. Cognitive task analysis, CTA, refers to the interview and extraction of a general body of knowledge. Each interview participant completed four 1 to 2-hour semistructured CTA interviews...
April 2024: Journal of Surgical Education
https://read.qxmd.com/read/38471300/automatic-procedure-for-modelling-calibration-and-optimization-of-a-three-component-chromatographic-separation
#35
JOURNAL ARTICLE
Daniel Espinoza, Simon Tallvod, Niklas Andersson, Bernt Nilsson
The current landscape of biopharmaceutical production necessitates an ever-growing set of tools to meet the demands for shorter development times and lower production costs. One path towards meeting these demands is the implementation of digital tools in the development stages. Mathematical modelling of process chromatography, one of the key unit operations in the biopharmaceutical downstream process, is one such tool. However, obtaining parameter values for such models is a time-consuming task that grows in complexity with the number of compounds in the mixture being purified...
March 7, 2024: Journal of Chromatography. A
https://read.qxmd.com/read/38467698/the-joint-simon-task-is-not-joint-for-capuchin-monkeys
#36
JOURNAL ARTICLE
Mayte Martínez, Matthew H Babb, Friederike Range, Sarah F Brosnan
Human cooperation can be facilitated by the ability to create a mental representation of one's own actions, as well as the actions of a partner, known as action co-representation. Even though other species also cooperate extensively, it is still unclear whether they have similar capacities. The Joint Simon task is a two-player task developed to investigate this action co-representation. We tested brown capuchin monkeys (Sapajus [Cebus] apella), a highly cooperative species, on a computerized Joint Simon task and found that, in line with previous research, the capuchins' performance was compatible with co-representation...
March 11, 2024: Scientific Reports
https://read.qxmd.com/read/38462794/closing-the-loop-the-role-of-pathologists-in-digital-and-computational-pathology-research
#37
EDITORIAL
Tilman T Rau, William Cross, Ricardo R Lastra, Regina C-L Lo, Andres Matoso, C Simon Herrington
An increasing number of manuscripts related to digital and computational pathology are being submitted to The Journal of Pathology: Clinical Research as part of the continuous evolution from digital imaging and algorithm-based digital pathology to computational pathology and artificial intelligence. However, despite these technological advances, tissue analysis still relies heavily on pathologists' annotations. There are three crucial elements to the pathologist's role during annotation tasks: granularity, time constraints, and responsibility for the interpretation of computational results...
March 2024: Journal of Pathology. Clinical Research
https://read.qxmd.com/read/38457170/impacts-of-the-covid-19-pandemic-on-health-and-social-professionals-working-with-people-with-disabilities-a-qualitative-study
#38
JOURNAL ARTICLE
Noémie Fortin-Bédard, David Bouchard, Naomie-Jade Ladry, Josiane Lettre, Boucher Normand, Simon Beaulieu-Bonneau, Alexandra Lecours, Kadija Perreault, LeBlanc Annie, FranÇcois Routhier, Marie-Eve Lamontagne
BACKGROUND: Since the beginning of the COVID-19 pandemic, protection and isolation measures established by the Canadian and Quebec governments have directly affected the work of health and social professionals (HSPs). These measures have added pressure on HSPs, complexified their work and added tasks to their already busy workload. However, few studies have explored in depth the impacts of the pandemic on HSPs working with people with disabilities. OBJECTIVE: The objective of this study was to qualitatively explore the experiences of HSPs working among people with disabilities in the province of Quebec, Canada, during the COVID-19 pandemic (January and February 2021), including the impact on their work, the relationships with their colleagues, and on their immediate social and familial environment...
March 8, 2024: Work: a Journal of Prevention, Assessment, and Rehabilitation
https://read.qxmd.com/read/38451272/the-simon-effect-under-reversed-visual-feedback
#39
JOURNAL ARTICLE
Hamza Sabek, Loïc P Heurley, Ronan Guerineau, Vincent Dru
Our aim was to study the processes involved in the spatial coding of the body during actions producing multiple simultaneous effects. We specifically aimed to challenge the intentional-based account, which proposes that the effects used to code responses are those deemed relevant to the agent's goal. Accordingly, we used a Simon paradigm (widely recognized as a suitable method to investigate the spatial coding of responses) combined with a setup inducing a multimodal discrepancy between visual and tactile/proprioceptive effects (known to be crucial for body schema construction and action control)...
March 7, 2024: Psychological Research
https://read.qxmd.com/read/38449751/-muddy-muddled-or-muffled-understanding-the-perception-of-audio-quality-in-music-by-hearing-aid-users
#40
JOURNAL ARTICLE
Scott Bannister, Alinka E Greasley, Trevor J Cox, Michael A Akeroyd, Jon Barker, Bruno Fazenda, Jennifer Firth, Simone N Graetzer, Gerardo Roa Dabike, Rebecca R Vos, William M Whitmer
INTRODUCTION: Previous work on audio quality evaluation has demonstrated a developing convergence of the key perceptual attributes underlying judgments of quality, such as timbral, spatial and technical attributes. However, across existing research there remains a limited understanding of the crucial perceptual attributes that inform audio quality evaluation for people with hearing loss, and those who use hearing aids. This is especially the case with music, given the unique problems it presents in contrast to human speech...
2024: Frontiers in Psychology
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