keyword
https://read.qxmd.com/read/38591685/predicting-the-photodynamics-of-cyclobutanone-triggered-by-a-laser-pulse-at-200%C3%A2-nm-and-its-mev-ued-signals-a-trajectory-surface-hopping-and-xms-caspt2-perspective
#1
JOURNAL ARTICLE
Jiří Janoš, Joao Pedro Figueira Nunes, Daniel Hollas, Petr Slavíček, Basile F E Curchod
This work is part of a prediction challenge that invited theoretical/computational chemists to predict the photochemistry of cyclobutanone in the gas phase, excited at 200 nm by a laser pulse, and the expected signal that will be recorded during a time-resolved megaelectronvolt ultrafast electron diffraction (MeV-UED). We present here our theoretical predictions based on a combination of trajectory surface hopping with XMS-CASPT2 (for the nonadiabatic molecular dynamics) and Born-Oppenheimer molecular dynamics with MP2 (for the athermal ground-state dynamics following internal conversion), coined (NA+BO)MD...
April 14, 2024: Journal of Chemical Physics
https://read.qxmd.com/read/38545195/influence-of-malocclusion-and-orthodontic-treatment-in-the-masticatory-efficiency-of-patients-with-craniofacial-disorders
#2
JOURNAL ARTICLE
Christina Weismann, Maria Schmidt, Josephine Effert, Gregor Slavicek, Florian Slavicek, Matthias C Schulz, Christian F Poets, Bernd Koos, Maite Aretxabaleta
This study evaluates masticatory efficiency in orthodontic patients with craniofacial disorders compared to controls without, considering the effect of an orthodontic appliance and malocclusion. A total of 119 participants (7-21 years), divided into a craniofacial disorder and control group (n = 42 and n = 77; mean age 13.5 ± 5.2 and 14.2 ± 3.3 years) were included. Masticatory efficiency was evaluated using a standard food model test, where masticated test food bodies were analyzed, and parameters like particle number (n) and area (mm2 ) were recorded...
March 30, 2024: Heliyon
https://read.qxmd.com/read/38234256/fast-and-accurate-excited-states-predictions-machine-learning-and-diabatization
#3
JOURNAL ARTICLE
Štěpán Sršeň, O Anatole von Lilienfeld, Petr Slavíček
The efficiency of machine learning algorithms for electronically excited states is far behind ground-state applications. One of the underlying problems is the insufficient smoothness of the fitted potential energy surfaces and other properties in the vicinity of state crossings and conical intersections, which is a prerequisite for an efficient regression. Smooth surfaces can be obtained by switching to the diabatic basis. However, diabatization itself is still an outstanding problem. We overcome these limitations by solving both problems at once...
January 18, 2024: Physical Chemistry Chemical Physics: PCCP
https://read.qxmd.com/read/38227434/unveiling-the-borohydride-ion-through-force-field-development
#4
JOURNAL ARTICLE
Shavkat Mamatkulov, Jakub Polák, Jamoliddin Razzokov, Lukáš Tomaník, Petr Slavíček, Joachim Dzubiella, Matej Kanduč, Jan Heyda
The borohydride ion, BH4 - , is an essential reducing agent in many technological processes, yet its full understanding has been elusive, because of at least two significant challenges. One challenge arises from its marginal stability in aqueous solutions outside of basic pH conditions, which considerably limits the experimental thermodynamic data. The other challenge comes from its unique and atypical hydration shell, stemming from the negative excess charge on its hydrogen atoms, which complicates the accurate modeling in classical atomistic simulations...
January 16, 2024: Journal of Chemical Theory and Computation
https://read.qxmd.com/read/38157303/visible-light-activated-carbon-monoxide-release-from-porphyrin-flavonol-hybrids
#5
JOURNAL ARTICLE
Andrea Ramundo, Jiří Janoš, Lucie Muchová, Mária Šranková, Jakub Dostál, Miroslav Kloz, Libor Vítek, Petr Slavíček, Petr Klán
We report on porphyrin-flavonol hybrids consisting of a porphyrin antenna and four covalently bound 3-hydroxyflavone (flavonol) groups, which act as highly efficient photoactivatable carbon monoxide (CO)-releasing molecules (photoCORMs). These bichromophoric systems enable activation of the UV-absorbing flavonol chromophore by visible light up to 650 nm and offer precise spatial and temporal control of CO administration. The physicochemical properties of the porphyrin antenna system can also be tuned by inserting a metal cation...
December 29, 2023: Journal of the American Chemical Society
https://read.qxmd.com/read/38081132/photocatalytic-generation-of-trifluoromethyl-nitrene-for-alkene-aziridination
#6
JOURNAL ARTICLE
Norbert Baris, Martin Dračínský, Ján Tarábek, Josef Filgas, Petr Slavíček, Lucie Ludvíková, Soňa Boháčová, Tomáš Slanina, Blanka Klepetářová, Petr Beier
N-Trifluoromethylated organics may be applied in drug design, agrochemical synthesis, and materials science, among other areas. Yet, despite recent advances in the synthesis of aliphatic, cyclic and heterocyclic N-trifluoromethyl compounds, no strategy based on trifluoromethyl nitrene has hitherto been explored. Here we describe the formation of triplet trifluoromethyl nitrene from azidotrifluoromethane, a stable and safe-to-use precursor, by visible light photocatalysis. The addition of CF3 N to alkenes via biradical intermediates afforded previously unknown aziridines substituted with trifluoromethyl group on the nitrogen atom...
December 11, 2023: Angewandte Chemie
https://read.qxmd.com/read/38026808/on-the-wavelength-dependent-photochemistry-of-the-atmospheric-molecule-cf-3-cocl
#7
JOURNAL ARTICLE
Jiří Janoš, Ivo S Vinklárek, Jozef Rakovský, Deb Pratim Mukhopadhyay, Basile F E Curchod, Michal Fárník, Petr Slavíček
The wavelength control of photochemistry usually results from ultrafast dynamics following the excitation of different electronic states. Here, we investigate the CF3 COCl molecule, exhibiting wavelength-dependent photochemistry both via (i) depositing increasing internal energy into a single state and (ii) populating different electronic states. We reveal the mechanism behind the photon-energy dependence by combining nonadiabatic ab initio molecular dynamics techniques with the velocity map imaging experiment...
November 16, 2023: ACS Earth & Space Chemistry
https://read.qxmd.com/read/37970807/specific-versus-nonspecific-solvent-interactions-of-a-biomolecule-in-water
#8
JOURNAL ARTICLE
Lanhai He, Lukáš Tomaník, Sebastian Malerz, Florian Trinter, Sebastian Trippel, Michal Belina, Petr Slavíček, Bernd Winter, Jochen Küpper
Solvent interactions, particularly hydration, are vital in chemical and biochemical systems. Model systems reveal microscopic details of such interactions. We uncover a specific hydrogen-bonding motif of the biomolecular building block indole (C8 H7 N), tryptophan's chromophore, in water: a strong localized N-H···OH2 hydrogen bond, alongside unstructured solvent interactions. This insight is revealed from a combined experimental and theoretical analysis of the electronic structure of indole in aqueous solution...
November 16, 2023: Journal of Physical Chemistry Letters
https://read.qxmd.com/read/37939301/what-controls-the-quality-of-photodynamical-simulations-electronic-structure-versus-nonadiabatic-algorithm
#9
JOURNAL ARTICLE
Jiří Janoš, Petr Slavíček
The field of nonadiabatic dynamics has matured over the last decade with a range of algorithms and electronic structure methods available at the moment. While the community currently focuses more on developing and benchmarking new nonadiabatic dynamics algorithms, the underlying electronic structure controls the outcome of nonadiabatic simulations. Yet, the electronic-structure sensitivity analysis is typically neglected. In this work, we present a sensitivity analysis of the nonadiabatic dynamics of cyclopropanone to electronic structure methods and nonadiabatic dynamics algorithms...
November 8, 2023: Journal of Chemical Theory and Computation
https://read.qxmd.com/read/37905588/spin-vibronic-coupling-controls-the-intersystem-crossing-of-iodine-substituted-bodipy-triplet-chromophores
#10
JOURNAL ARTICLE
Jiří Doležel, Anna Poryvai, Tomáš Slanina, Josef Filgas, Petr Slavíček
4,4-difluoro-4-borata-3a-azonia-4a-aza-s-indacene (BODIPY) dyes are extensively used in various applications of their triplet states, ranging from photoredox catalysis, through triplet sensitization to photodynamic therapy. However, the rational design of BODIPY triplet chromophores by ab initio modelling is limited by their strong interactions of spin, electronic and vibrational dynamics. In particular, spin-vibronic coupling is often overlooked when estimating intersystem crossing (ISC) rates. In this study, we developed a combined experimental and theoretical approach using spin-vibronic coupling to correctly describe ISC in BODIPY dyes...
October 31, 2023: Chemistry: a European Journal
https://read.qxmd.com/read/37620544/radiation-damage-by-extensive-local-water-ionization-from-two-step-electron-transfer-mediated-decay-of-solvated-ions
#11
JOURNAL ARTICLE
G Gopakumar, I Unger, P Slavíček, U Hergenhahn, G Öhrwall, S Malerz, D Céolin, F Trinter, B Winter, I Wilkinson, C Caleman, E Muchová, O Björneholm
Biomolecular radiation damage is largely mediated by radicals and low-energy electrons formed by water ionization rather than by direct ionization of biomolecules. It was speculated that such an extensive, localized water ionization can be caused by ultrafast processes following excitation by core-level ionization of hydrated metal ions. In this model, ions relax via a cascade of local Auger-Meitner and, importantly, non-local charge- and energy-transfer processes involving the water environment. Here, we experimentally and theoretically show that, for solvated paradigmatic intermediate-mass Al3+ ions, electronic relaxation involves two sequential solute-solvent electron transfer-mediated decay processes...
August 24, 2023: Nature Chemistry
https://read.qxmd.com/read/37541120/mercury-occurrence-and-speciation-in-sediments-from-hard-coal-mining-in-czechia
#12
JOURNAL ARTICLE
Dominik Vöröš, Patricia Díaz Baizán, Karel Slavíček, Mercedes Díaz-Somoano, Eva Geršlová
This study examines Hg distribution in stream sediments impacted by hard coal mining in the Upper Silesian Coal Basin (USCB), Czechia. By means of a comparative analysis, geological samples and samples from stream sediments were used to carry out a comprehensive assessment of the effects of anthropogenic activities on Hg distribution and speciation. Total Hg (THg), total organic and inorganic carbons (TOC and TIC), and total sulphur (TS) were measured in the samples to reveal a potential relationship. In addition, THg and TS species were discussed in order to elucidate their mobility pattern in the environment...
August 2, 2023: Journal of Hazardous Materials
https://read.qxmd.com/read/37503706/robert-m-ricketts-and-rudolf-slavicek-dentistry-by-the-rules-of-nature
#13
JOURNAL ARTICLE
Cinzia Fornai, Nelson J Oppermann, Ian Tester, Kim Parlett, Mohammed H Elnagar, Budi Kusnoto, Flavio J C Sanchez
The stomatognathic structures act as a complex and integrated system, thereby accomplishing several essential functions of the body. Aside from participating in food digestion, they are key for respiration and swallowing and play a central role in social interaction and stress management. The lifeworks of Robert M. Ricketts (1920-2003), an American orthodontist, and Rudolf Slavicek (1928-2022), an Austrian prosthodontist, were centered on this understanding. Both were educated in the time of gnathology, functional dentistry, and cephalometry and were ready to challenge conventional knowledge and traditions, leading toward innovation...
July 28, 2023: Angle Orthodontist
https://read.qxmd.com/read/37146036/spin-vibronic-control-of-intersystem-crossing-in-iodine-substituted-heptamethine-cyanines
#14
JOURNAL ARTICLE
Radek Tovtik, Eva Muchová, Lenka Štacková, Petr Slavíček, Petr Klán
Spin-orbit coupling between electronic states of different multiplicity can be strongly coupled to molecular vibrations, and this interaction is becoming recognized as an important mechanism for controlling the course of photochemical reactions. Here, we show that the involvement of spin-vibronic coupling is essential for understanding the photophysics and photochemistry of heptamethine cyanines (Cy7), bearing iodine as a heavy atom in the C3' position of the chain and/or a 3 H -indolium core, as potential triplet sensitizers and singlet oxygen producers in methanol and aqueous solutions...
May 5, 2023: Journal of Organic Chemistry
https://read.qxmd.com/read/36901330/masticatory-efficiency-in-orthodontic-patients-with-craniofacial-disorder
#15
JOURNAL ARTICLE
Maria Schmidt, Gregor Slavicek, Florian Slavicek, Matthias C Schulz, Maite Aretxabaleta, Josephine Effert, Bernd Koos, Christina Weise
This study evaluates the masticatory efficiency in patients with craniofacial disorders (CD) compared to controls (C). A total of 119 participants (7-21 years), divided into CD group (n = 42, mean age 13.45 ± 5.2 years) and C group (n = 77, mean age 14.3 ± 3.27 years) under an orthodontic treatment were included. Masticatory efficiency was assessed using a standard food model test. The masticated food was examined according to its number of particles (n) and area (mm2 ), wherein a higher number of particles alongside a smaller area was an indication of better masticatory efficiency...
February 28, 2023: International Journal of Environmental Research and Public Health
https://read.qxmd.com/read/36657082/redox-potentials-with-cosmo-rs-systematic-benchmarking-with-different-databases
#16
JOURNAL ARTICLE
Lukáš Tomaník, Lubomír Rulíšek, Petr Slavíček
Recent techniques of computational electrochemistry can yield redox potentials with accuracy as good as 0.1 V. Yet, many such methods are not universal, easy to use, or computationally efficient. Herein, we provide a systematic benchmarking of a relatively cheap and straightforward computational approach for fairly accurate computations of redox potentials. It is based on a combination of the conductor-like screening model for real solvents (COSMO-RS) and the density functional theory (DFT). The benchmarking is done with databases covering diverse redox systems, including transition-metal aquacomplexes and various organic and inorganic compounds...
January 19, 2023: Journal of Chemical Theory and Computation
https://read.qxmd.com/read/36643831/lower-limb-skeletal-robustness-determines-the-change-of-directional-speed-performance-in-youth-ice-hockey
#17
JOURNAL ARTICLE
Tobias Slavicek, Petr Stastny, Robert Roczniok, Martin Musalek
The factors that influence the on-ice change of directional speed (COD) of ice hockey players remain unclear. Therefore, this study aimed to determine which off-ice and anthropometric variables determine hockey COD with and without a puck. Thirty-two elite ice hockey players (age: 17.64 ± 1.02 years, body height: 180 ± 7.5 cm, body mass: 76.4 ± 7.8 kg) performed squat jumps, broad jumps, countermovement jumps, and pull-ups and were assessed on agility office and on-ice, with and without a puck...
December 2022: Journal of Human Kinetics
https://read.qxmd.com/read/36610949/excitation-and-fragmentation-of-the-dielectric-gas-c-4-f-7-n-electrons-vs-photons
#18
JOURNAL ARTICLE
Tomáš Ovad, Marin Sapunar, Štěpán Sršeň, Petr Slavíček, Zdeněk Mašín, Nykola C Jones, Søren Vrønning Hoffmann, Miloš Ranković, Juraj Fedor
C4 F7 N is a promising candidate for the replacement of sulfur hexafluoride as an insulating medium, and it is important to understand the chemical changes initiated in the molecule by collision with free electrons, specifically the formation of neutral fragments. The first step of neutral fragmentation is electronic excitation, yet neither the absorption spectrum in the vacuum ultraviolet (VUV) region nor the electron energy loss spectrum have previously been reported. Here, we experimentally probed the excited states by VUV photoabsorption spectroscopy and electron energy loss spectroscopy (EELS)...
January 7, 2023: Journal of Chemical Physics
https://read.qxmd.com/read/36591114/on-site-x-ray-fluorescence-spectrometry-measurement-strategy-for-assessing-the-sulfonation-to-improve-chemimechanical-pulping-processes
#19
JOURNAL ARTICLE
Hafizur Rahman, Siwen An, Börje Norlin, Erik Persson, Per Engstrand, Faisal Zeeshan, Thomas Granfeldt, Tomáš Slavíček, Gunilla Pettersson
Minimizing the fiber property distribution would have the potential to improve the pulp properties and the process efficiency of chemimechanical pulp. To achieve this, it is essential to improve the level of knowledge of how evenly distributed the sulfonate concentration is between the individual chemimechanical pulp fibers. Due to the variation in quality between pulpwood and sawmill chips, as well as the on-chip screening method, it is difficult to develop an impregnation system that ensures the even distribution of sodium sulfite (Na2 SO3 ) impregnation liquid...
December 27, 2022: ACS Omega
https://read.qxmd.com/read/36350084/ultrafast-charge-and-proton-transfer-in-doubly-ionized-ammonia-dimers
#20
JOURNAL ARTICLE
Jiaqi Zhou, Michal Belina, Shaokui Jia, Xiaorui Xue, Xintai Hao, Xueguang Ren, Petr Slavíček
We investigate the ultrafast energy and charge transfer processes between ammonia molecules following ionization reactions initiated by electron impact. Exploring ionization-induced processes in molecular clusters provides us with a detailed insight into the dynamics using experiments in the energy domain. We ionize the ammonia dimer with 200 eV electrons and apply the fragment ions coincident momentum spectroscopy and nonadiabatic molecular dynamics simulations. We identify two mechanisms leading to the doubly charged ammonia dimer...
November 9, 2022: Journal of Physical Chemistry Letters
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