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Bistable systems

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https://www.readbyqxmd.com/read/28416663/bistable-metamaterial-for-switching-and-cascading-elastic-vibrations
#1
Osama R Bilal, André Foehr, Chiara Daraio
The realization of acoustic devices analogous to electronic systems, like diodes, transistors, and logic elements, suggests the potential use of elastic vibrations (i.e., phonons) in information processing, for example, in advanced computational systems, smart actuators, and programmable materials. Previous experimental realizations of acoustic diodes and mechanical switches have used nonlinearities to break transmission symmetry. However, existing solutions require operation at different frequencies or involve signal conversion in the electronic or optical domains...
April 17, 2017: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/28415377/delay-induced-depinning-of-localized-structures-in-a-spatially-inhomogeneous-swift-hohenberg-model
#2
Felix Tabbert, Christian Schelte, Mustapha Tlidi, Svetlana V Gurevich
We report on the dynamics of localized structures in an inhomogeneous Swift-Hohenberg model describing pattern formation in the transverse plane of an optical cavity. This real order parameter equation is valid close to the second-order critical point associated with bistability. The optical cavity is illuminated by an inhomogeneous spatial Gaussian pumping beam and subjected to time-delayed feedback. The Gaussian injection beam breaks the translational symmetry of the system by exerting an attracting force on the localized structure...
March 2017: Physical Review. E
https://www.readbyqxmd.com/read/28415353/noise-induced-symmetry-breaking-far-from-equilibrium-and-the-emergence-of-biological-homochirality
#3
Farshid Jafarpour, Tommaso Biancalani, Nigel Goldenfeld
The origin of homochirality, the observed single-handedness of biological amino acids and sugars, has long been attributed to autocatalysis, a frequently assumed precursor for early life self-replication. However, the stability of homochiral states in deterministic autocatalytic systems relies on cross-inhibition of the two chiral states, an unlikely scenario for early life self-replicators. Here we present a theory for a stochastic individual-level model of autocatalytic prebiotic self-replicators that are maintained out of thermal equilibrium...
March 2017: Physical Review. E
https://www.readbyqxmd.com/read/28415301/nonlinear-signaling-on-biological-networks-the-role-of-stochasticity-and-spectral-clustering
#4
Gonzalo Hernandez-Hernandez, Jesse Myers, Enrique Alvarez-Lacalle, Yohannes Shiferaw
Signal transduction within biological cells is governed by networks of interacting proteins. Communication between these proteins is mediated by signaling molecules which bind to receptors and induce stochastic transitions between different conformational states. Signaling is typically a cooperative process which requires the occurrence of multiple binding events so that reaction rates have a nonlinear dependence on the amount of signaling molecule. It is this nonlinearity that endows biological signaling networks with robust switchlike properties which are critical to their biological function...
March 2017: Physical Review. E
https://www.readbyqxmd.com/read/28396937/bifurcation-analysis-and-global-dynamics-of-a-mathematical-model-of-antibiotic-resistance-in-hospitals
#5
Xiuli Cen, Zhilan Feng, Yiqiang Zheng, Yulin Zhao
Antibiotic-resistant bacteria have posed a grave threat to public health by causing a number of nosocomial infections in hospitals. Mathematical models have been used to study transmission dynamics of antibiotic-resistant bacteria within a hospital and the measures to control antibiotic resistance in nosocomial pathogens. Studies presented in Lipstich et al. (Proc Natl Acad Sci 97(4):1938-1943, 2000) and Lipstich and Bergstrom (Infection control in the ICU environment. Kluwer, Boston, 2002) have provided valuable insights in understanding the transmission of antibiotic-resistant bacteria in a hospital...
April 10, 2017: Journal of Mathematical Biology
https://www.readbyqxmd.com/read/28375247/optical-bistability-in-coupled-optomechanical-cavities-in-the-presence-of-kerr-effect
#6
A Asghari Nejad, H R Askari, H R Baghshahi
We theoretically investigate optical bistability for a hybrid optomechanical system, where two cavities (an optomechanical cavity and a traditional one) are coupled together. A Kerr medium is inserted in the optomechanical cavity and there is an ultra-cold atomic gas inside the other. Dynamics of the system is described by Heisenberg-Langevin equations of motion in the steady-state regime. Bistability is observed in intracavity intensity for the optomechanical cavity, and the response of this phenomenon to optical parameters of the system is investigated...
April 1, 2017: Applied Optics
https://www.readbyqxmd.com/read/28364729/intestinal-microbiome-landscaping-insight-in-community-assemblage-and-implications-for-microbial-modulation-strategies
#7
Sudarshan A Shetty, Floor Hugenholtz, Leo Lahti, Hauke Smidt, Willem M de Vos
High individuality, large complexity and limited understanding of the mechanisms underlying human intestinal microbiome function remain the major challenges for designing beneficial modulation strategies. Exemplified by the analysis of intestinal bacteria in a thousand Western adults, we discuss key concepts of the human intestinal microbiome landscape, i.e. the compositional and functional 'core', the presence of community types and the existence of alternative stable states. Genomic investigation of core taxa revealed functional redundancy, which is expected to stabilize the ecosystem, as well as taxa with specialized functions that have the potential to shape the microbiome landscape...
March 1, 2017: FEMS Microbiology Reviews
https://www.readbyqxmd.com/read/28323019/comparison-of-perceptual-properties-of-auditory-streaming-between-spectral-and-amplitude-modulation-domains
#8
Shimpei Yamagishi, Sho Otsuka, Shigeto Furukawa, Makio Kashino
The two-tone sequence (ABA_), which comprises two different sounds (A and B) and a silent gap, has been used to investigate how the auditory system organizes sequential sounds depending on various stimulus conditions or brain states. Auditory streaming can be evoked by differences not only in the tone frequency ("spectral cue": ΔFTONE, TONE condition) but also in the amplitude modulation rate ("AM cue": ΔFAM, AM condition). The aim of the present study was to explore the relationship between the perceptual properties of auditory streaming for the TONE and AM conditions...
March 17, 2017: Hearing Research
https://www.readbyqxmd.com/read/28286945/controlled-sol-gel-transitions-by-actuating-molecular-machine-based-supramolecular-polymers
#9
Antoine Goujon, Giacomo Mariani, Thomas Lang, Emilie Moulin, Michel Rawiso, Eric Buhler, Nicolas Giuseppone
The implementation of artificial molecular machines in polymer science is an important objective that challenges chemists and physicists in order to access an entirely new class of smart materials. To design such systems, the amplification of a mechanical actuation from the nanoscale up to a macroscopic response in the bulk material is a central issue. In this article we show that bistable [c2]daisy chain rotaxanes (i.e., molecular muscles) can be linked into main-chain Upy-based supramolecular polymers. We then reveal by an in depth quantitative study that the pH actuation of the mechanically active rotaxane at the nanoscale influences the physical reticulation of the polymer chains by changing the supramolecular behavior of the Upy units...
March 23, 2017: Journal of the American Chemical Society
https://www.readbyqxmd.com/read/28280580/organization-of-biogeochemical-nitrogen-pathways-with-switch-like-adjustment-in-fluctuating-soil-redox-conditions
#10
Sanjay Lamba, Soumen Bera, Mubasher Rashid, Alexander B Medvinsky, Gui-Quan Sun, Claudia Acquisti, Amit Chakraborty, Bai-Lian Li
Nitrogen is cycled throughout ecosystems by a suite of biogeochemical processes. The high complexity of the nitrogen cycle resides in an intricate interplay between reversible biochemical pathways alternatively and specifically activated in response to diverse environmental cues. Despite aggressive research, how the fundamental nitrogen biochemical processes are assembled and maintained in fluctuating soil redox conditions remains elusive. Here, we address this question using a kinetic modelling approach coupled with dynamical systems theory and microbial genomics...
January 2017: Royal Society Open Science
https://www.readbyqxmd.com/read/28273072/bistable-front-dynamics-in-a-contractile-medium-travelling-wave-fronts-and-cortical-advection-define-stable-zones-of-rhoa-signaling-at-epithelial-adherens-junctions
#11
Rashmi Priya, Guillermo A Gomez, Srikanth Budnar, Bipul R Acharya, Andras Czirok, Alpha S Yap, Zoltan Neufeld
Mechanical coherence of cell layers is essential for epithelia to function as tissue barriers and to control active tissue dynamics during morphogenesis. RhoA signaling at adherens junctions plays a key role in this process by coupling cadherin-based cell-cell adhesion together with actomyosin contractility. Here we propose and analyze a mathematical model representing core interactions involved in the spatial localization of junctional RhoA signaling. We demonstrate how the interplay between biochemical signaling through positive feedback, combined with diffusion on the cell membrane and mechanical forces generated in the cortex, can determine the spatial distribution of RhoA signaling at cell-cell junctions...
March 2017: PLoS Computational Biology
https://www.readbyqxmd.com/read/28246663/steady-state-statistical-correlations-predict-bistability-in-reaction-motifs
#12
Suchana Chakravarty, Debashis Barik
Various cellular decision making processes are regulated by bistable switches that take graded input signals and convert them to binary all-or-none responses. Traditionally, a bistable switch generated by a positive feedback loop is characterized either by a hysteretic signal response curve with two distinct signaling thresholds or by characterizing the bimodality of the response distribution in the bistable region. To identify the intrinsic bistability of a feedback regulated network, here we propose that bistability can be determined by correlating higher order moments and cumulants (≥2) of the joint steady state distributions of two components connected in a positive feedback loop...
March 1, 2017: Molecular BioSystems
https://www.readbyqxmd.com/read/28245235/the-role-of-the-hes1-crosstalk-hub-in-notch-wnt-interactions-of-the-intestinal-crypt
#13
Sophie K Kay, Heather A Harrington, Sarah Shepherd, Keith Brennan, Trevor Dale, James M Osborne, David J Gavaghan, Helen M Byrne
The Notch pathway plays a vital role in determining whether cells in the intestinal epithelium adopt a secretory or an absorptive phenotype. Cell fate specification is coordinated via Notch's interaction with the canonical Wnt pathway. Here, we propose a new mathematical model of the Notch and Wnt pathways, in which the Hes1 promoter acts as a hub for pathway crosstalk. Computational simulations of the model can assist in understanding how healthy intestinal tissue is maintained, and predict the likely consequences of biochemical knockouts upon cell fate selection processes...
February 2017: PLoS Computational Biology
https://www.readbyqxmd.com/read/28208393/nonvariational-mechanism-of-front-propagation-theory-and-experiments
#14
A J Alvarez-Socorro, M G Clerc, G González-Cortés, M Wilson
Multistable systems exhibit a rich front dynamics between equilibria. In one-dimensional scalar gradient systems, the spread of the fronts is proportional to the energy difference between equilibria. Fronts spreading proportionally to the energetic difference between equilibria is a characteristic of one-dimensional scalar gradient systems. Based on a simple nonvariational bistable model, we show analytically and numerically that the direction and speed of front propagation is led by nonvariational dynamics...
January 2017: Physical Review. E
https://www.readbyqxmd.com/read/28208357/oscillatory-pulses-and-wave-trains-in-a-bistable-reaction-diffusion-system-with-cross-diffusion
#15
Evgeny P Zemskov, Mikhail A Tsyganov, Werner Horsthemke
We study waves with exponentially decaying oscillatory tails in a reaction-diffusion system with linear cross diffusion. To be specific, we consider a piecewise linear approximation of the FitzHugh-Nagumo model, also known as the Bonhoeffer-van der Pol model. We focus on two types of traveling waves, namely solitary pulses that correspond to a homoclinic solution, and sequences of pulses or wave trains, i.e., a periodic solution. The effect of cross diffusion on wave profiles and speed of propagation is analyzed...
January 2017: Physical Review. E
https://www.readbyqxmd.com/read/28208316/bistable-director-alignments-of-nematic-liquid-crystals-confined-in-frustrated-substrates
#16
Takeaki Araki, Jumpei Nagura
We studied in-plane bistable alignments of nematic liquid crystals confined by two frustrated surfaces by means of Monte Carlo simulations of the Lebwohl-Lasher spin model. The surfaces are prepared with orientational checkerboard patterns, on which the director field is locally anchored to be planar yet orthogonal between the neighboring blocks. We found the director field in the bulk tends to be aligned along the diagonal axes of the checkerboard pattern, as reported experimentally [J.-H. Kim et al., Appl...
January 2017: Physical Review. E
https://www.readbyqxmd.com/read/28202593/a-maugis-dugdale-cohesive-solution-for-adhesion-of-a-surface-with-a-dimple
#17
A Papangelo, M Ciavarella
We study the adhesion of a surface with a 'dimple' which shows a mechanism for a bi-stable adhesive system in surfaces with spaced patterns of depressions, leading to adhesion enhancement, high dissipation and hysteresis. Recent studies were limited mainly to the very short range of adhesion (the so-called JKR regime), while we generalize the study to a Maugis cohesive model. A 'generalized Tabor parameter', given by the ratio of theoretical strength to elastic modulus, multiplied by the ratio of dimple width to depth has been found...
February 2017: Journal of the Royal Society, Interface
https://www.readbyqxmd.com/read/28192958/flow-cytometric-single-cell-analysis-for-quantitative-in-vivo-detection-of-protein-protein-interactions-via-relative-reporter-protein-expression-measurement
#18
Lina Wu, Xu Wang, Jianqiang Zhang, Tian Luan, Emmanuelle Bouveret, Xiaomei Yan
Cell-based two-hybrid assays have been key players in identifying pairwise interactions, yet quantitative measurement of protein-protein interactions in vivo remains challenging. Here, we show that by using relative reporter protein expression (RRPE), defined as the level of reporter expression normalized to that of the interacting protein, quantitative analysis of protein interactions in a bacterial adenylate cyclase two-hybrid (BACTH) system can be achieved. A multicolor flow cytometer was used to measure simultaneously the expression levels of one of the two putative interacting proteins and the β-galactosidase (β-gal) reporter protein upon dual immunofluorescence staining...
February 20, 2017: Analytical Chemistry
https://www.readbyqxmd.com/read/28134382/measurement-of-bistability-in-a-multidimensional-parameter-space
#19
Vincent Jaquet, Chieh Hsu, Attila Becskei
Bistability plays an important role to generate two stable states for alternative cell fates, or to promote cellular diversity and cell cycle oscillations. Positive feedback loops are necessary for the existence of bistability and ultrasensitive reactions in the loops broaden the parameter range of bistability. The broader parameter range a system's bistability covers, the more robust the two states are. It is challenging to determine the bistable range of a parameter because noise and transient processes induce transitions between the two states...
February 20, 2017: Integrative Biology: Quantitative Biosciences From Nano to Macro
https://www.readbyqxmd.com/read/28124498/bistability-in-organic-magnetic-materials-a-comparative-study-of-the-key-differences-between-hysteretic-and-non-hysteretic-spin-transitions-in-dithiazolyl-radicals
#20
Sergi Vela, Michael B Reardon, Charles E Jakobsche, Mark M Turnbull, Jordi Ribas-Arino, Juan J Novoa
Dithiazolyl (DTA)-based radicals have furnished many examples of organic spin-transition materials, some of them occurring with hysteresis and some others without. Herein, we present a combined computational and experimental study aimed at deciphering the factors controlling the existence or absence of hysteresis by comparing the phase transitions of 4-cyanobenzo-1,3,2-dithiazolyl and 1,3,5-trithia-2,4,6-triazapentalenyl radicals, which are prototypical examples of non-bistable and bistable spin transitions, respectively...
January 26, 2017: Chemistry: a European Journal
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