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Bistable systems

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https://www.readbyqxmd.com/read/28097417/bistability-induced-by-generalist-natural-enemies-can-reverse-pest-invasions
#1
Sten Madec, Jérôme Casas, Guy Barles, Christelle Suppo
Analytical modeling of predator-prey systems has shown that specialist natural enemies can slow, stop and even reverse pest invasions, assuming that the prey population displays a strong Allee effect in its growth. We aimed to formalize the conditions in which spatial biological control can be achieved by generalists, through an analytical approach based on reaction-diffusion equations. Using comparison principles, we obtain sufficient conditions for control and for invasion, based on scalar bistable partial differential equations...
January 17, 2017: Journal of Mathematical Biology
https://www.readbyqxmd.com/read/28093831/light-controlled-reversible-modulation-of-frontier-molecular-orbital-energy-levels-in-trifluoromethylated-diarylethenes
#2
Martin Herder, Fabian Eisenreich, Aurelio Bonasera, Anna Grafl, Lutz Grubert, Michael Pätzel, Jutta Schwarz, Stefan Hecht
Among bistable photochromic molecules diarylethenes (DAEs) possess the distinct feature that upon photoisomerization they undergo a large modulation of their π-electronic system, accompanied by a marked shift of the HOMO/LUMO energies and hence oxidation/reduction potentials. In order to exploit such photoswitchable systems it is important to precisely adjust the absolute position of their HOMO and LUMO levels and to maximize the extent of the photoinduced shifts of these energy levels. Here, we present a comprehensive study detailing how variation of the substitution pattern of DAE compounds, in particular using strongly electron-accepting and chemically stable trifluoromethyl groups either in the periphery or at the reactive carbon atoms, allows for the precise tuning of frontier molecular orbital levels over a broad energy range and the generation of photoinduced shifts of more than 1 eV...
January 17, 2017: Chemistry: a European Journal
https://www.readbyqxmd.com/read/28073272/phase-transitions-in-spin-crossover-thin-films-probed-by-graphene-transport-measurements
#3
J Dugay, M Aarts, M Giménez-Marqués, T Kozlova, H W Zandbergen, E Coronado, H S J van der Zant
Future multifunctional hybrid devices might combine switchable molecules and 2D material-based devices. Spin-crossover compounds are of particular interest in this context since they exhibit bistability and memory effects at room temperature while responding to numerous external stimuli. Atomically thin 2D materials such as graphene attract a lot of attention for their fascinating electrical, optical, and mechanical properties, but also for their reliability for room-temperature operations. Here, we demonstrate that thermally induced spin-state switching of spin-crossover nanoparticle thin films can be monitored through the electrical transport properties of graphene lying underneath the films...
January 11, 2017: Nano Letters
https://www.readbyqxmd.com/read/28030588/bistable-mechanisms-for-space-applications
#4
Shannon A Zirbel, Kyler A Tolman, Brian P Trease, Larry L Howell
Compliant bistable mechanisms are monolithic devices with two stable equilibrium positions separated by an unstable equilibrium position. They show promise in space applications as nonexplosive release mechanisms in deployment systems, thereby eliminating friction and improving the reliability and precision of those mechanical devices. This paper presents both analytical and numerical models that are used to predict bistable behavior and can be used to create bistable mechanisms in materials not previously feasible for compliant mechanisms...
2016: PloS One
https://www.readbyqxmd.com/read/28004255/robustness-flexibility-and-sensitivity-in-a-multifunctional-motor-control-model
#5
David N Lyttle, Jeffrey P Gill, Kendrick M Shaw, Peter J Thomas, Hillel J Chiel
Motor systems must adapt to perturbations and changing conditions both within and outside the body. We refer to the ability of a system to maintain performance despite perturbations as "robustness," and the ability of a system to deploy alternative strategies that improve fitness as "flexibility." Different classes of pattern-generating circuits yield dynamics with differential sensitivities to perturbations and parameter variation. Depending on the task and the type of perturbation, high sensitivity can either facilitate or hinder robustness and flexibility...
December 21, 2016: Biological Cybernetics
https://www.readbyqxmd.com/read/28002400/evolution-of-the-global-phosphorus-cycle
#6
Christopher T Reinhard, Noah J Planavsky, Benjamin C Gill, Kazumi Ozaki, Leslie J Robbins, Timothy W Lyons, Woodward W Fischer, Chunjiang Wang, Devon B Cole, Kurt O Konhauser
The macronutrient phosphorus is thought to limit primary productivity in the oceans on geological timescales. Although there has been a sustained effort to reconstruct the dynamics of the phosphorus cycle over the past 3.5 billion years, it remains uncertain whether phosphorus limitation persisted throughout Earth's history and therefore whether the phosphorus cycle has consistently modulated biospheric productivity and ocean-atmosphere oxygen levels over time. Here we present a compilation of phosphorus abundances in marine sedimentary rocks spanning the past 3...
January 19, 2017: Nature
https://www.readbyqxmd.com/read/27995902/plant-inspired-adaptive-structures-and-materials-for-morphing-and-actuation-a-review
#7
Suyi Li, K W Wang
Plants exhibit a variety of reversible motions, from the slow opening of pine cones to the impulsive closing of Venus flytrap leaves. These motions are achieved without muscles and they have inspired a wide spectrum of engineered materials and structures. This review summarizes the recent developments of plant-inspired adaptive structures and materials for morphing and actuation. We begin with a brief overview of the actuation strategies and physiological features associated to these plant movements, showing that different combinations of these strategies and features can lead to motions with different deformation characteristics and response speeds...
December 20, 2016: Bioinspiration & Biomimetics
https://www.readbyqxmd.com/read/27993627/an-open-loop-approach-to-calculate-noise-induced-transitions
#8
Farzaneh Maleki, Attila Becskei
Bistability permits the co-existence of two distinct cell fates in a population of genetically identical cells. Noise induced transitions between two fates of a bistable system are difficult to calculate due to the intricate interplay between nonlinear dynamics and noise in bistable positive feedback loops. Here we opened multivariable feedback loops at the slowest variable to obtain the open-loop function and the fluctuations in the open-loop output. By the subsequent reclosing of the loop, we calculated the mean first passage time (MFPT) using the Fokker-Planck equation in good agreement with the exact stochastic simulation...
December 18, 2016: Journal of Theoretical Biology
https://www.readbyqxmd.com/read/27984903/steady-state-equivalence-among-autocatalytic-peroxidase-oxidase-reactions
#9
José Méndez-González, Ricardo Femat
Peroxidase-oxidase is an enzymatic reaction that can exhibit dynamical scenarios such as bistability, sustained oscillations, and Shilnikov chaos. In this work, we apply the chemical reaction network theory approach to find kinetic constants such that the associated mass action kinetics ordinary differential equations induced by three four dimensional structurally different enzymatic reaction systems can support the same steady states for several chemical species despite differences in their chemical nature...
December 14, 2016: Journal of Chemical Physics
https://www.readbyqxmd.com/read/27967182/heat-dissipation-and-information-flow-for-delayed-bistable-langevin-systems-near-coherence-resonance
#10
Tiejun Xiao
In this paper, stochastic thermodynamics of delayed bistable Langevin systems near coherence resonance is discussed. We calculate the heat dissipation rate and the information flow of a delayed bistable Langevin system under various noise intensities. Both the heat dissipation rate and the information flow are found to be bell-shaped functions of the noise intensity, which implies that coherence resonance manifests itself in the thermodynamic properties.
November 2016: Physical Review. E
https://www.readbyqxmd.com/read/27967167/optical-wall-dynamics-induced-by-coexistence-of-monostable-and-bistable-spatial-regions
#11
V Odent, E Louvergneaux, M G Clerc, I Andrade-Silva
When nonequilibrium extended homogeneous systems exhibit multistability, it leads to the presence of domain walls between the existing equilibria. Depending on the stability of the steady states, the dynamics differs. Here, we consider the interface dynamics in the case of a spatially inhomogeneous system, namely, an optical system where the control parameter is spatially Gaussian. Then interfaces connect the monostable and the bistable nonuniform states that are associated with two distinct spatial regions...
November 2016: Physical Review. E
https://www.readbyqxmd.com/read/27967145/temporal-disorder-does-not-forbid-discontinuous-absorbing-phase-transitions-in-low-dimensional-systems
#12
M M de Oliveira, C E Fiore
Recent papers have shown that spatial (quenched) disorder can suppress discontinuous absorbing phase transitions. Conversely, the scenario for temporal disorder is still unknown. To shed some light in this direction, we investigate its effect in three different two-dimensional models which are known to exhibit discontinuous absorbing phase transitions. The temporal disorder is introduced by allowing the control parameter to be time dependent p→p(t), either varying as a uniform distribution with mean p[over ¯] and variance σ or as a bimodal distribution, fluctuating between a value p and a value p_{l}≪p...
November 2016: Physical Review. E
https://www.readbyqxmd.com/read/27967045/thermodynamic-geometry-of-minimum-dissipation-driven-barrier-crossing
#13
David A Sivak, Gavin E Crooks
We explore the thermodynamic geometry of a simple system that models the bistable dynamics of nucleic acid hairpins in single molecule force-extension experiments. Near equilibrium, optimal (minimum-dissipation) driving protocols are governed by a generalized linear response friction coefficient. Our analysis demonstrates that the friction coefficient of the driving protocols is sharply peaked at the interface between metastable regions, which leads to minimum-dissipation protocols that drive rapidly within a metastable basin, but then linger longest at the interface, giving thermal fluctuations maximal time to kick the system over the barrier...
November 2016: Physical Review. E
https://www.readbyqxmd.com/read/27967004/robustness-of-persistent-spiking-to-partial-synchronization-in-a-minimal-model-of-synaptically-driven-self-sustained-activity
#14
Nikita Novikov, Boris Gutkin
We study the behavior of a minimal model of synaptically sustained persistent activity that consists of two quadratic integrate-and-fire neurons mutually coupled via excitatory synapses. Importantly, each of the neurons is excitable, as opposed to an oscillator; hence when uncoupled it sits at a subthreshold rest state. When the constituent neurons are mutually coupled via sufficiently strong fast excitatory synapses, the system demonstrates bistability between a fixed point (quiescent background state) and a limit cycle (memory state with synaptically driven spiking activity)...
November 2016: Physical Review. E
https://www.readbyqxmd.com/read/27941830/coexistence-of-write-once-read-many-memory-and-memristor-in-blend-of-poly-3-4-ethylenedioxythiophene-polystyrene-sulfonate-and-polyvinyl-alcohol
#15
Viet Cuong Nguyen, Pooi See Lee
In this work, the coexistence of Write Once Read Many Memory (WORM) and memristor can be achieved in a single device of Poly(3,4-ethylenedioxythiophene): polystyrene sulfonate (PEDOT: PSS) and Polyvinyl Alcohol (PVA) blend organic memory system. In memristor mode, the bistable resistance states of the device can be cycled for more than 1000 times. Once a large negative bias of -8V was applied to the device, it was switched to permanent high resistance state that cannot be restored back to lower resistance states...
December 12, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27931974/mathematical-modeling-of-atopic-dermatitis-reveals-double-switch-mechanisms-underlying-four-common-disease-phenotypes
#16
Elisa Domínguez-Hüttinger, Panayiotis Christodoulides, Kosuke Miyauchi, Alan D Irvine, Mariko Okada-Hatakeyama, Masato Kubo, Reiko J Tanaka
BACKGROUND: The skin barrier acts as the first line of defense against constant exposure to biological, microbial, physical and chemical environmental stressors. Dynamic interplay between defects in the skin barrier, dysfunctional immune responses, and environmental stressors are major factors in the development of atopic dermatitis (AD). A systems-biology modeling approach can yield significant insights into these complex and dynamic processes through integration of prior biological data...
December 5, 2016: Journal of Allergy and Clinical Immunology
https://www.readbyqxmd.com/read/27927198/a-computational-method-for-the-investigation-of-multistable-systems-and-its-application-to-genetic-switches
#17
Miriam Leon, Mae L Woods, Alex J H Fedorec, Chris P Barnes
BACKGROUND: Genetic switches exhibit multistability, form the basis of epigenetic memory, and are found in natural decision making systems, such as cell fate determination in developmental pathways. Synthetic genetic switches can be used for recording the presence of different environmental signals, for changing phenotype using synthetic inputs and as building blocks for higher-level sequential logic circuits. Understanding how multistable switches can be constructed and how they function within larger biological systems is therefore key to synthetic biology...
December 7, 2016: BMC Systems Biology
https://www.readbyqxmd.com/read/27918617/thermodynamic-insights-on-a-bistable-acid-base-switchable-molecular-shuttle-with-strongly-shifted-co-conformational-equilibria
#18
Giulio Ragazzon, Alberto Credi, Benoit Colasson
Bistable [2]rotaxanes in which the affinities of the two stations can be reversed form the basis of molecular shuttles. Gaining quantitative information on such rotaxanes in which the ring distribution between the two stations is largely nonsymmetric has proven to be very challenging. Here we report on two independent experimental methodologies - based on luminescence lifetime measurement and acid-base titrations - to determine the relative populations of the two co-conformations of a [2]rotaxane. The assays yield convergent results and are sensitive enough to measure an equilibrium constant (K ~ 4000) out of reach for NMR spectroscopy...
December 5, 2016: Chemistry: a European Journal
https://www.readbyqxmd.com/read/27911933/driving-cells-to-the-desired-state-in-a-bimodal-distribution-through-manipulation-of-internal-noise-with-biologically-practicable-approaches
#19
Che-Chi Shu, Chen-Chao Yeh, Wun-Sin Jhang, Shih-Chiang Lo
The stochastic nature of gene regulatory networks described by Chemical Master Equation (CME) leads to the distribution of proteins. A deterministic bistability is usually reflected as a bimodal distribution in stochastic simulations. Within a certain range of the parameter space, a bistable system exhibits two stable steady states, one at the low end and the other at the high end. Consequently, it appears to have a bimodal distribution with one sub-population (mode) around the low end and the other around the high end...
2016: PloS One
https://www.readbyqxmd.com/read/27889260/two-bistable-switches-govern-m-phase-entry
#20
Satoru Mochida, Scott Rata, Hirotsugu Hino, Takeharu Nagai, Béla Novák
The abrupt and irreversible transition from interphase to M phase is essential to separate DNA replication from chromosome segregation. This transition requires the switch-like phosphorylation of hundreds of proteins by the cyclin-dependent kinase 1 (Cdk1):cyclin B (CycB) complex. Previous studies have ascribed these switch-like phosphorylations to the auto-activation of Cdk1:CycB through the removal of inhibitory phosphorylations on Cdk1-Tyr15 [1, 2]. The positive feedback in Cdk1 activation creates a bistable switch that makes mitotic commitment irreversible [2-4]...
December 19, 2016: Current Biology: CB
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