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https://www.readbyqxmd.com/read/27455451/descriptions-and-implementations-of-dl_f-notation-a-natural-chemical-expression-system-of-atom-types-for-molecular-simulations
#1
Chin W Yong
DL_F Notation is an easy-to-understand, standardized atom typesetting expression for molecular simulations for a range of organic force field (FF) schemes such as OPLSAA, PCFF, and CVFF. It is implemented within DL_FIELD, a software program that facilitates the setting up of molecular FF models for DL_POLY molecular dynamics simulation software. By making use of the Notation, a single core conversion module (the DL_F conversion Engine) implemented within DL_FIELD can be used to analyze a molecular structure and determine the types of atoms for a given FF scheme...
August 22, 2016: Journal of Chemical Information and Modeling
https://www.readbyqxmd.com/read/27275763/correction-underweight-markers-of-cachexia-and-mortality-in-acute-myocardial-infarction-a-prospective-cohort-study-of-elderly-medicare-beneficiaries
#2
(no author information available yet)
This article was republished on May 19th, 2016 to correct poor figure quality in the PDF version, which was introduced during the typesetting process. [This corrects the article DOI: 10.1371/journal.pmed.1001998.].
June 2016: PLoS Medicine
https://www.readbyqxmd.com/read/26971727/masculinity-and-material-culture-in-technological-transitions-from-letterpress-to-offset-lithography-1960s-1980s
#3
Jesse Adams Stein
Between the 1960s and the 1980s the printing industry in advanced capitalist economies underwent dramatic technological change. While the transition from "hot metal" compositing to computerized typesetting has been extensively analyzed, there was another transformation occurring simultaneously: in the pressroom, letterpress was gradually replaced by offset lithography. Many letterpress machinists retrained, moving from a heavy, manual technology (with an entrenched patriarchal culture) to a method that was faster and less physically taxing...
2016: Technology and Culture
https://www.readbyqxmd.com/read/26529715/guidelines-for-effective-usage-of-text-highlighting-techniques
#4
Hendrik Strobelt, Daniela Oelke, Bum Chul Kwon, Tobias Schreck, Hanspeter Pfister
Semi-automatic text analysis involves manual inspection of text. Often, different text annotations (like part-of-speech or named entities) are indicated by using distinctive text highlighting techniques. In typesetting there exist well-known formatting conventions, such as bold typeface, italics, or background coloring, that are useful for highlighting certain parts of a given text. Also, many advanced techniques for visualization and highlighting of text exist; yet, standard typesetting is common, and the effects of standard typesetting on the perception of text are not fully understood...
January 2016: IEEE Transactions on Visualization and Computer Graphics
https://www.readbyqxmd.com/read/26248432/-experience-in-typesetting-the-periodical-chinese-journal-of-applied-physiology-english-version-with-indesign-cs6
#5
Yun-mei Tian, Jing-ran Sun
No abstract text is available yet for this article.
March 2015: Chinese Journal of Applied Physiology
https://www.readbyqxmd.com/read/25905774/correction-an-efficiency-comparison-of-document-preparation-systems-used-in-academic-research-and-development
#6
Markus Knauff, Jelica Nejasmic
This article was republished on March 30, 2015, to correct the sizing and placement of thefigures; none of the article content was changed. The publisher apologizes for the originallayout errors. Please download this article again to view the corrected version. The originallypublished, uncorrected article and the republished, corrected article are provided herefor reference.
2015: PloS One
https://www.readbyqxmd.com/read/25526083/an-efficiency-comparison-of-document-preparation-systems-used-in-academic-research-and-development
#7
COMPARATIVE STUDY
Markus Knauff, Jelica Nejasmic
The choice of an efficient document preparation system is an important decision for any academic researcher. To assist the research community, we report a software usability study in which 40 researchers across different disciplines prepared scholarly texts with either Microsoft Word or LaTeX. The probe texts included simple continuous text, text with tables and subheadings, and complex text with several mathematical equations. We show that LaTeX users were slower than Word users, wrote less text in the same amount of time, and produced more typesetting, orthographical, grammatical, and formatting errors...
2014: PloS One
https://www.readbyqxmd.com/read/25524100/owl-electronic-datasheet-generator
#8
Evan Appleton, Jenhan Tao, F Carter Wheatley, Devina H Desai, Thomas M Lozanoski, Pooja D Shah, Jake A Awtry, Shawn S Jin, Traci L Haddock, Douglas M Densmore
Owl ( www.owlcad.org ) is a biodesign automation tool that generates electronic datasheets for synthetic biological parts using common formatting. Data can be retrieved automatically from existing repositories and modified in the Owl user interface (UI). Owl uses the data to generate an HTML page with standard typesetting that can be saved as a PDF file. Here we present the Owl software tool in its alpha version, its current UI, its description of input data for generating a datasheet, its example datasheets, and the vision of the tool's role in biodesign automation...
December 19, 2014: ACS Synthetic Biology
https://www.readbyqxmd.com/read/25001122/workers-of-the-printing-industry-and-hepatic-damage
#9
A Sancini, T Caciari, A Chighine, P A Gioffrè, G Andreozzi, L Sacchi, R Giubilati, G Tomei, A Suppi, C Sacco, F Tomei, M V Rosati
BACKGROUND: Typesetting industry is still the primary instrument of communication, despite the development of new technological systems. This study focuses on the analysis of the hepatic effects induced by the use of some organic solvents employed in the printing industry. METHODS: We studied a group of 194 workers: 93 exposed and 101 not exposed. The level of the exposure to chemical pollutants were assessed through the environmental monitoring of blood concentrations and the analysis of airborne substances...
July 2014: Annali di Igiene: Medicina Preventiva e di Comunità
https://www.readbyqxmd.com/read/22493574/decoupling-the-scholarly-journal
#10
Jason Priem, Bradley M Hemminger
Although many observers have advocated the reform of the scholarly publishing system, improvements to functions like peer review have been adopted sluggishly. We argue that this is due to the tight coupling of the journal system: the system's essential functions of archiving, registration, dissemination, and certification are bundled together and siloed into tens of thousands of individual journals. This tight coupling makes it difficult to change any one aspect of the system, choking out innovation. We suggest that the solution is the "decoupled journal (DcJ)...
2012: Frontiers in Computational Neuroscience
https://www.readbyqxmd.com/read/22039095/cancer-mortality-among-female-and-male-workers-occupationally-exposed-to-inorganic-lead-in-the-printing-industry
#11
Svetlana A Ilychova, David G Zaridze
OBJECTIVE: Evaluation of the carcinogenicity of lead for humans has been based primarily on the results of studies on occupationally exposed men, although gender differences in lead metabolism have been reported. In addition, most of the previous studies have been limited by a failure to identify and control for co-exposures to other known occupational carcinogens. The present study follows an industrial cohort of workers, mostly women, with moderate lead exposure and no confounding by other occupational exposures...
February 2012: Occupational and Environmental Medicine
https://www.readbyqxmd.com/read/21189843/processing-dna-molecules-as-text
#12
Uri Shabi, Shai Kaplan, Gregory Linshiz, Tuval Benyehezkel, Hen Buaron, Yair Mazor, Ehud Shapiro
UNLABELLED: Polymerase Chain Reaction (PCR) is the DNA-equivalent of Gutenberg's movable type printing, both allowing large-scale replication of a piece of text. De novo DNA synthesis is the DNA-equivalent of mechanical typesetting, both ease the setting of text for replication. What is the DNA-equivalent of the word processor? Biology labs engage daily in DNA processing-the creation of variations and combinations of existing DNA-using a plethora of manual labor-intensive methods such as site-directed mutagenesis, error-prone PCR, assembly PCR, overlap extension PCR, cleavage and ligation, homologous recombination, and others...
September 2010: Systems and Synthetic Biology
https://www.readbyqxmd.com/read/20829443/sbml2tikz-supporting-the-sbml-render-extension-in-latex
#13
Si Yuan Shen, Frank Bergmann, Herbert M Sauro
MOTIVATION: The SBML Render Extension enables coloring and shape information of biochemical models to be stored in the Systems Biology Markup Language (SBML). Rendering of this stored graphical information in a portable and well supported system such as TeX would be useful for researchers preparing documentation and presentations. In addition, since the Render Extension is not yet supported by many applications, it is helpful for such rendering functionality be extended to the more popular CellDesigner annotation as well...
November 1, 2010: Bioinformatics
https://www.readbyqxmd.com/read/20599287/idd-info-a-software-to-manage-surveillance-data-of-iodine-deficiency-disorders
#14
Peng Liu, Bai-Jun Teng, Shu-Bin Zhang, Xiao-Hui Su, Jun Yu, Shou-Jun Liu
OBJECTIVES: IDD info, a new software for managing survey data of Iodine Deficiency Disorders (IDD), is presented in this paper. IDD Info aims to create IDD project databases, process, analyze various national or regional surveillance data and form final report. It has series measures of choosing database from existing ones, revising it, choosing indicators from pool to establish database and adding indicators to pool. It also provides simple tools to scan one database and compare two databases, to set IDD standard parameters, to analyze data by single indicator and multi-indicators, and finally to form typeset report with content customized...
August 2011: Computer Methods and Programs in Biomedicine
https://www.readbyqxmd.com/read/19866435/poprep-a-generic-report-for-population-management
#15
E Groeneveld, B v D Westhuizen, A Maiwashe, F Voordewind, J B S Ferraz
Genetic variation provides a basis upon which populations can be genetically improved. Management of animal genetic resources in order to minimize loss of genetic diversity both within and across breeds has recently received attention at different levels, e.g., breed, national and international levels. A major need for sustainable improvement and conservation programs is accurate estimates of population parameters, such as rate of inbreeding and effective population size. A software system (POPREP) is presented that automatically generates a typeset report...
2009: Genetics and Molecular Research: GMR
https://www.readbyqxmd.com/read/18296234/least-squares-font-metric-estimation-from-images
#16
G E Kopec
The problem of determining font metrics from measurements on images of typeset text is discussed, and least-squares procedures for font metric estimation are developed. When it is shown that kerning is not present, sidebearing estimation involves solving a set of linear equations, called the sidebearing normal equations. More generally, simultaneous sidebearing and kerning term estimation involves an iterative procedure in which a modified set of sidebearing normal equations is solved during each iteration...
1993: IEEE Transactions on Image Processing: a Publication of the IEEE Signal Processing Society
https://www.readbyqxmd.com/read/18188836/inconsistencies-between-reported-test-statistics-and-p-values-in-two-psychiatry-journals
#17
David Berle, Vladan Starcevic
A recent survey of the British Medical Journal (BMJ) and Nature revealed that inconsistencies in reported statistics were common. We sought to replicate that survey in the psychiatry literature. We checked the consistency of reported t-test, F-test and chi(2)-test values with their corresponding p-values in the 2005 issues of the Australian and New Zealand Journal of Psychiatry (ANZJP) and compared this with the issues of the ANZJP from 2000, and with a similar journal, Acta Psychiatrica Scandinavica (APS)...
2007: International Journal of Methods in Psychiatric Research
https://www.readbyqxmd.com/read/15352375/typesetting-of-terahertz-waveforms
#18
T Feurer, Joshua C Vaughan, T Hornung, Keith A Nelson
We demonstrate programmable generation of temporally shaped terahertz waveforms in LiNbO3 by spatially shaping the beam profile of femtosecond excitation laser pulses with a spatial light modulator. The generated terahertz waveforms have amplitudes that are approximately proportional to the first spatial derivative of the excitation beam profile.
August 1, 2004: Optics Letters
https://www.readbyqxmd.com/read/14784461/upper-versus-lower-case-copy-as-a-factor-in-typesetting-speed-for-linotype-trainees
#19
B STERN
No abstract text is available yet for this article.
October 1950: Journal of Applied Psychology
https://www.readbyqxmd.com/read/10842735/texshade-shading-and-labeling-of-multiple-sequence-alignments-using-latex2-epsilon
#20
E Beitz
MOTIVATION: Typesetting, shading and labeling of nucleotide and peptide alignments using standard word processing or graphics software is time consuming. Available automatic sequence shading programs usually do not allow manual application of additional shadings or labels. Hence, a flexible alignment shading package was designed for both calculated and manual shading, using the macro language of the scientific typesetting software LATEX2 epsilon. RESULTS: TEXshade is the first TEX-based alignment shading software featuring, in addition to standard identity and similarity shading, special modes for the display of functional aspects such as charge, hydropathy or solvent accessibility...
February 2000: Bioinformatics
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