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https://www.readbyqxmd.com/read/28211312/olivibacter-composti-sp-nov-isolated-from-compost-collected-at-a-greenhouse
#1
Shih-Yao Lin, Asif Hameed, Kai-Yeh Chiu, You-Cheng Liu, Yi-Han Hsu, Wei-An Lai, Chiu-Chung Young
A polyphasic approach was used to characterize a presumably novel bacterium, designated strain CC-KYC063T, isolated from a compost sample collected at a greenhouse facility within Taiwan. Strain CC-KYC063T was Gram-stain-negative and aerobic, able to grow at 15-37 °C (optimal 30 °C), at pH 7.0-9.0 (optimal pH 7.0) and with 0-2 % (w/v) NaCl. The 16S rRNA gene sequence of strain CC-KYC063T showed highest similarity to Olivibacter ginsengisoli Gsoil 060T (96.2 %) and Olivibacter terrae Jip13T (95.5 %)...
January 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28141483/pontibacter-aurantiacus-sp-nov-isolated-from-hexachlorocyclohexane-hch-contaminated-soil
#2
Priya Singh, Rashmi Kumari, Namita Nayyar, Rup Lal
Strain NP1T, a Gram-stain negative, orange-coloured, rod-shaped bacterium was isolated from hexacholorocyclohexane (HCH) contaminated soil sediment collected from Ummari village, Lucknow, Uttar Pradesh, India. The 16S rRNA gene sequence analysis showed that strain NP1T clustered with members belonging to the genus Pontibacter of the order Cytophagales, family Cytophagaceae and phylum Bacteriodetes. The 16S rRNA gene sequence similarity with type strains of the genus Pontibacter ranged from 98.57 to 93.95% depicting Pontibacter odishensis JC-130T (98...
January 28, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28126047/niveitalea-solisilvae-gen-nov-sp-nov-isolated-from-forest-soil-and-emended-description-of-the-genus-flavihumibacter-zhang-et-al-2010
#3
Jong Woo Hyeon, Hyo Jung Lee, Sang Eun Jeong, Ga Youn Cho, Che Ok Jeon
A gram-staining-negative and strictly aerobic bacterial strain, designated 6-4T, was isolated from forest soil in Jeju island, South Korea. Cells showing oxidase-positive and catalase-negative reactions were thin and long non-motile rods. Growth of strain 6-4T was observed at 20-35 C (optimum, 30 C) and pH 6.0-9.0 (optimum, pH 7.0). Strain 6-4T contained iso-C15:0, anteiso-C15:0, iso-C15:1 G and iso-C17:0 3-OH as the major fatty acids and menaquinone-7 (MK-7) as the sole isoprenoid quinone. Phosphatidylethanolamine was the major polar lipid and five unidentified aminolipids, one unidentified aminophospholipid and one unidentified lipid were also detected as the minor polar lipids...
January 26, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109207/rhodohalobacter-halophilus-gen-nov-sp-nov-a-moderately-halophilic-member-of-the-family-balneolaceae
#4
Jun Xia, Zhi-Hong Xie, Christopher A Dunlap, Alejandro P Rooney, Zong-Jun Du
A novel Gram-stain-negative, rod-shaped, facultatively anaerobic, oxidase-negative and catalase-positive bacterium, designated JZ3C29T, was isolated from a saltern located in Feicheng, China. Strain JZ3C29T was tolerant to moderate salt conditions. Optimal growth occurred at 40 °C (range 20-50 °C) and pH 7.5-8.5 (range pH 7.0-9.0) with 8-10 % (w/v) NaCl (range 2-16 %). Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain JZ3C29T shared highest similarity with Gracilimonas tropica CL-CB462T (90...
January 19, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109203/pedobacter-lusitanus-sp-nov-a-new-bacterial-species-isolated-from-sludge-of-a-deactivated-uranium-mine-in-portugal
#5
Cláudia Covas, Tânia Caetano, Andreia Cruz, Tiago Santos, Liliana Dias, Guenter Klein, Amir Abdulmawjood, Luiz Rodríguez-Alcalá, Lígia Pimentel, Ana Gomes, Ana Cristina Freitas, Alba Garcia-Serrano, Javier Fontecha, Sónia Mendo
Strain NL19T is a Gram negative aerobic bacterium that was isolated from sludge of a deactivated uranium mine in Portugal. 16S rRNA gene sequence analysis revealed that strain NL19T is a member of the genus Pedobacter and closely related to the strains Pedobacter himalayensis MTCC 6384T, Pedobacter cryoconitis DSM 14825T, Pedobacter westerhofensis DSM 19036T and P. hartonius DSM 19033T. It has a DNA G+C content of 40.8 mol%, which agreed with the genus description. The main fatty acids include C16:1 9c, C14:1 9c, C4:0, Iso-C17:0, Iso-C17:0 3-OH, C16:0, Anteiso-C15:0 and Iso-C15:0 3-OH...
January 21, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28032538/alkalicoccus-halolimnae-gen-nov-sp-nov-a-moderately-halophilic-bacterium-isolated-from-a-salt-lake-and-reclassification-of-bacillus-saliphilus-as-alkalicoccus-saliphilus-comb-nov
#6
Baisuo Zhao, Weidong Lu, Shanshan Zhang, Kang Liu, Yanchun Yan, Jun Li
A Gram-stain-positive, cocci-shaped, non-spore-forming, and moderately halophilic bacterium, designed BZ-SZ-XJ29T, was isolated from a salt lake of China. On the basis of 16S rRNA gene sequence similarity, the most closely phylogenetic relatives were Bacillus saliphilus 6AGT (97.3 %) and other five Bacillus species (95.4-96.3 %). However, it shared only 89.5 % with Bacillus subtilis subsp. subtilis DSM 10T, indicating that this isolate might not be a member of Bacillus genus. The genomic DNA G+C content was 40...
December 29, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28024259/a-novel-method-for-the-determination-of-chemical-purity-and-assay-of-menaquinone-7-comparison-with-the-methods-from-the-official-usp-monograph
#7
Łukasz Jedynak, Maria Jedynak, Magdalena Kossykowska, Joanna Zagrodzka
An HPLC method with UV detection and separation with the use of a C30 reversed phase analytical column for the determination of chemical purity and assay of menaquinone-7 (MK7) in one chromatographic run was developed. The method is superior to the methods published in the USP Monograph in terms of selectivity, sensitivity and accuracy, as well as time, solvent and sample consumption. The developed methodology was applied to MK7 samples of active pharmaceutical ingredient (API) purity, MK7 samples of lower quality and crude MK7 samples before purification...
December 10, 2016: Journal of Pharmaceutical and Biomedical Analysis
https://www.readbyqxmd.com/read/27959775/ruficoccus-amylovorans-gen-nov-sp-nov-an-amylolytic-and-nitrate-reducing-diazotroph-of-the-family-puniceicoccaceae
#8
Shih-Yao Lin, Asif Hameed, You-Cheng Liu, Yi-Han Hsu, Mei-Hua Hung, Wei-An Lai, Chiu-Chung Young
A novel amylolytic, nitrate-reducing and diazotrophic bacterium, designated strain CC-MHH0563T, isolated from a fermentor was assessed for its taxonomic status using polyphasic taxonomy. Cells of strain CC-MHH0563T was Gram-staining-negative, catalase- and oxidase-positive, mesophilic and aerobic cocci, which produced reddish nondiffusible-pigments. Growth was observed at 15-37 ºС (optimal 25 ºС), pH 6.0-8.0 (optimal pH 7.0) and salinity (0-3 %, w/v). Strain CC-MHH0563T showed highest pair-wise 16S rRNA gene sequence similarity to the members of genera Cerasicoccus (89...
December 12, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27958192/haoranjiania-flava-gen-nov-sp-nov-a-new-member-of-the-family-chitinophagaceae-isolated-from-activated-sludge
#9
Long Zhang, Xiao-Long Chen, Qiang Hu, Kai Chen, Xin Yan, Shun-Peng Li, Shiri Freilich, Jian-Dong Jiang
A novel Gram-stain-negative, non-spore-forming and short rod-shaped bacterium, strain LIP-5T, isolated from an activated sludge in a pesticide factory in Xinyi, China, was investigated for its taxonomic position by a polyphasic approach. Cell growth occurred at 16-42 °C (optimum, 30 °C), in the presence of 0-3.0 % (w/v) NaCl (optimum, without NaCl) and at pH 6.0-9.0 (optimum, pH 7.0). Phylogenetic analysis based on 16S rRNA gene sequence comparisons showed that the isolate was a member of the family Chitinophagaceae, with the closest relatives being Arachidicoccus rhizosphaerae Vu-144T (93...
November 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902346/hymenobacter-rutilus-sp-nov-isolated-from-marine-sediment-in-arctic
#10
Myong Chol Kim, Chol Myong Kim, Ok Chol Kang, Yumin Zhang, Zuobing Liu, Danzeng Wangmu, Ziyan Wei, Yao Huang, Fang Peng
Strain K2-33028T, appeared brick-red colony on R2A plate, was isolated from marine sediment sample in Kings Bay, Svalbard Archipelago, Norway. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain K2-33028T belonged to the genus Hymenobacter. Cells were Gram-reaction-negative, non-spore-forming, aerobic, rod-shaped bacterium without motility. Growth occurred at 4-37℃ (optimum 28℃) and at pH 6.0-8.0 (optimum pH 7.0). Cells contained menaquinone-7, as the main respiratory quinone, and iso-C15:0, summed feature 3 (comprising C16:1 ω7c and/or C16:1 ω6c), C16:1 ω5c, summed feature 4 (comprising anteiso-C17:1 B and/or iso-C17:1 I) and anteiso-C15:0 as the major cellular fatty acids...
November 21, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902310/paenibacillus-silvae-sp-nov-isolated-from-tropical-rainforest-soil
#11
Huiqin Huang, Fute Zhang, Min Liu, Ying Cui, Qianguang Sun, Jun Zhu, Xiaoxiao Zou, Shixiang Bao
Two Gram-stain-positive, facultatively aerobic, endospore-forming and rod-shaped bacteria, designated DB13031T and DB13311, were isolated from soil of Jiaxi Nature Reserve in Hainan, China. 16S rRNA gene analysis of the strains DB13031T and DB13311 showed that they were within the Paenibacillus cluster, with the highest similarities of Paenibacillus cucumis AP-115T (98.4 % and 98.3 %, respectively), Paenibacillus barcinonensis BP-23T (98.3 % and 98.2 %, respectively) and Paenibacillus oceanisediminis L10T (97...
October 25, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902292/terrimonas-crocea-sp-nov-isolated-from-the-till-of-high-arctic-glacier-midtre-lov%C3%A3-nbreen-in-the-west-svalbard-archipelago
#12
Myong Chol Kim, Ok Chol Kang, Chol Myong Kim, Yumin Zhang, Zuobing Liu, Ziyan Wei, Yao Huang, Wangmu Danzeng, Fang Peng
A yellow-pigmented bacteria strain, designated M1-33108T, was isolated from the till of high Arctic glacier Midtre Lovénbreen (MLB) near Ny-Ålesund, in the West Svalbard Archipelago, Norway. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain M1-33108T belonged to the genus Terrimonas and its closest neighbor was Terrimonas arctica R9-86T with 96.12% 16S rRNA gene sequence similarity. Strain M1-33108T was Gram-reaction-negative, aerobic, non-spore-forming, rod-shaped bacterium that lacked motility...
November 24, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902277/pedobacter-zeae-sp-nov-an-endophytic-bacterium-isolated-from-maize-root
#13
Jun-Lian Gao, Pengbo Sun, Xiao-Jie Mao, Yan-Li Du, Bing-Yan Liu, Jian-Guang Sun
A novel Gram-staining-negative, aerobic, non-motile by gliding and rod-shaped strain designated 22T was isolated from surface-sterilized root tissue of maize planted in the Fangshan District of Beijing, People's Republic of China. The highest levels of 16S rRNA gene sequence similarity were found with respect to Pedobacter suwonensis15-52T (97.5 %), Pedobacter terrae DS-57T (97.1 %) and Pedobacter alluvionis NWER-II11T (97.0 %). Phylogenetic analysis based on 16S rRNA gene sequence data indicated that strain 22T is a member of the genus Pedobacter...
October 25, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902263/terrimonas-rhizosphaerae-sp-nov-isolated-from-ginseng-rhizosphere-soil
#14
Song-Ih Han, Ye-Rim Lee, Ju-Ok Kim, Kyung-Sook Whang
The novel isolate belonging to the genus Terrimonas, designated CR94T, was isolated from rhizosphere soil of ginseng field in Geumsan in Korea. Cells of Strain CR94T were strictly aerobic, Gram staining negative, non-motile, non-filamentous single rods. Growth was observed at 10-37℃ (optimum 28℃) and at pH4.0-10.0 (optimum pH6.0). Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain CR94T belonged to the genus Terrimonas, showing the highest sequence similarity to Terrimonas lutea DYT (97...
November 2, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902259/olivibacter-composti-sp-nov-isolated-from-compost-collected-at-a-greenhouse
#15
Shih-Yao Lin, Asif Hameed, Kai-Yeh Chiu, You-Cheng Liu, Yi-Han Hsu, Wei-An Lai, Chiu-Chung Young
A polyphasic approach was used to characterize a presumably novel bacterium, designated strain CC-KYC063T, isolated from a compost sample collected at a greenhouse facility within Taiwan. Strain CC-KYC063T was Gram-staining-negative and aerobic, able to grow at 15-37 ºС (optimal 30 ºС), pH 7.0-9.0 (optimal pH 7.0) and salinity (0-2 %, w/v). The 16S rRNA gene sequence analysis of strain CC-KYC063T showed highest sequence similarity to Olivibacter ginsengisoli Gsoil 060T (96.2 %) and Olivibacter terrae Jip13T (95...
October 21, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902228/spirosoma-swuense-sp-nov-a-bacterium-isolated-from-wet-soil
#16
Eun Sun Joo, Eun Bit Kim, Seon Hwa Jeon, Sathiyaraj Srinivasan, Myung Kyum Kim
Strain JBM2-3T, a pale-yellow-colored, aerobic, catalase-negative, oxidase-positive, and Gram-negative bacterium, was isolated from wet soil. The isolate grew aerobically at 25-30°C (optimum 25°C), pH 6.0-8.0 (optimum pH 7.0) and in the presence of 0-0.5 % (w/v) NaCl (optimum 0 % NaCl). Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain JBM2-3T belonged to the genus Spirosoma with a sequence similarity of 96.2% with Spirosoma panaciterrae Gsoil 1519T. The strain showed the typical chemotaxonomic characteristics of the genus Spirosoma, with the presence of respiratory quinone as menaquinone 7; the major fatty acids are summed feature 3 (composed of C16:1 ω6c/ω7c), C16:1ω5c, and C15:0 iso...
October 21, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902223/bacillus-capparidis-sp-nov-a-novel-endophytic-bacterium-isolated-from-roots-of-capparis-spinosa-l
#17
Hong-Fei Wang, Qiu-Li Li, Yong-Guang Zhang, Min Xiao, Xing-Kui Zhou, Jian-Wei Guo, Yan-Qing Duan, Wen-Jun Li
A novel endophytic bacterium, designated strain EGI 6500252T, was isolated from the surface-sterilized roots of medicinal plant (Capparis spinosa L.) collected from Urumqi city, Xinjiang, north-west of China. Cells were Gram-staining-positive, non-motile, aerobic, catalase- and oxidase-positive, rod-shaped and did not display spore formation. Strain EGI 6500252T grew at 10-40 °C (optimum 25-30 °C) and pH 6.0-8.0 (optimum pH 7.0), and in the presence of 0-10 % NaCl (w/v) (optimum 0-3 %). The major cellular fatty acids (> 10 %) were identified as iso-C15:0, anteiso-C15:0, anteiso-C17:0 and Sum In feature 4...
October 26, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902214/brevibacillus-halotolerans-sp-nov-isolated-from-saline-soil-sample-collected-from-paddy-field
#18
Jinlong Song, Yanwei Wang, Yi Song, Bingqiang Zhao, Huimin Wang, Shan Zhou, Delong Kong, Xiang Guo, Yanting Li, Mingxiong He, Kedong Ma, Zhiyong Ruan, Yanchun Yan
Two novel aerobic bacteria, designated strains LAM0312T and LAM0313, were isolated from saline soil sample collected from paddy field in Dezhou city, Shandong Province in China. The Cells of these strains were Gram-stain positive, sporogenous, rod-shaped and motile with peritrichous flagella. The optimal growth temperature and pH were 30 ºC and pH 7.0-8.0, repesctively. Strain LAM0312T was found to be able to grow in the presence of 12 % (w/v) NaCl. The major fatty acids of strains were identified as anteiso-C15:0 and iso-C15:0...
October 17, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27902208/lysinibacillus-alkalisoli-sp-nov-isolated-from-saline-alkaline-soil
#19
Ji-Quan Sun, Lian Xu, Xiao-Lei Wu
A Gram-stain-positive, aerobic bacterial strain, designated Y2A20T, with peritrichous flagella was isolated from the top layer saline-alkaline soil, Hangjin Banner, Inner Mongolia, northern China. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain Y2A20T formed a stable clade with 'Lysinibacillus jejuensis' N2-5T. Strain Y2A20T shared highest 16S rRNA gene sequence similarity with 'L. jejuensis' N2-5T (97.4 %), but lower 16S rRNA gene sequence similarities with all other type strains (<97...
January 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27888465/bacillus-piscis-sp-nov-a-novel-bacterium-isolated-from-the-muscle-of-the-antarctic-fish-dissostichus-mawsoni
#20
Jae-Bong Lee, Seon Hwa Jeon, Seok-Gwan Choi, Hee-Young Jung, Myung Kyum Kim, Sathiyaraj Srinivasan
In this paper, a new bacterial strain designated as 16MFT21(T) is isolated from the muscle of a fish caught in the Antarctic Ocean. Strain 16MFT21(T) is a Gram-staining-positive, catalase-oxidase-positive, rod-shaped facultative-aerobic bacterium. The phylogenetic analysis that is based on the 16S-rRNA gene sequence of strain 16MFT21(T) revealed that it belongs to the genus Bacillus in the family Bacillaceae in the class Bacilli. The highest degrees of the sequence similarity of the strain 16MFT21(T) is with Bacillus licheniformis ATCC 14580(T) (96...
December 2016: Journal of Microbiology / the Microbiological Society of Korea
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