keyword
https://read.qxmd.com/read/37934348/gastric-cancer-with-fanconi-anemia-in-adolescent-and-young-adult-patient-diagnosed-by-comprehensive-genome-profiling-using-next-generation-sequencing
#21
JOURNAL ARTICLE
Tsutomu Namikawa, Tomoki Tanaka, Masato Utsunomiya, Keiichiro Yokota, Masaya Munekage, Hiromichi Maeda, Hiroyuki Kitagawa, Yusuke Kurioka, Hironaga Satake, Michiya Kobayashi, Kazuhiro Hanazaki, Satoru Seo
Recently, the results of gastric cancer treatment have improved; however, its characteristics in adolescents and young adults are not well known. We report the case of a patient with advanced gastric cancer, Fanconi anemia (FA), and primary biliary cholangitis. A 26-year-old woman visited a local physician complaining of epigastralgia. Esophagogastroduodenoscopy revealed edematous changes with poor distension and circumferential thickened folds with erosions in the gastric body. Biopsy results of the lesion specimens revealed poorly differentiated adenocarcinoma...
November 7, 2023: Clinical Journal of Gastroenterology
https://read.qxmd.com/read/37905617/chemical-carcinogen-dimethyl-benzanthracene-induced-transplantable-cancer-in-fanconi-anemia-fanca-mice
#22
JOURNAL ARTICLE
Michael W Epperly, Amitava Mukherjee, Renee Fisher, Donna Shields, Wen Hou, Hong Wang, Lora H Rigatti, Anthony Green, M Saiful Huq, Joel S Greenberger
BACKGROUND/AIM: Patients with radiation sensitive Fanconi anemia (FA) are presenting with cancers of the oral cavity, oropharynx, and other anatomic locations. MATERIALS AND METHODS: Animal models for cancer in FA mice used orthotopic tumors from wild type mice. We derived a cancer cell line from Fanca-/- mice by topical application of the chemical carcinogen dimethyl benzanthracene (DMBA). RESULTS: A Fanca-/- mouse rhabdomyosarcoma was derived from a Fanca-/- (129/Sv) mouse...
2023: In Vivo
https://read.qxmd.com/read/37865086/identification-of-a-robust-dna-methylation-signature-for-fanconi-anemia
#23
JOURNAL ARTICLE
Daria Pagliara, Andrea Ciolfi, Lucia Pedace, Sadegheh Haghshenas, Marco Ferilli, Michael A Levy, Evelina Miele, Claudia Nardini, Camilla Cappelletti, Raissa Relator, Angela Pitisci, Rita De Vito, Simone Pizzi, Jennifer Kerkhof, Haley McConkey, Francesca Nazio, Sarina G Kant, Maddalena Di Donato, Emanuele Agolini, Marta Matraxia, Barbara Pasini, Alessandra Pelle, Tiziana Galluccio, Antonio Novelli, Tahsin Stefan Barakat, Marco Andreani, Francesca Rossi, Cristina Mecucci, Anna Savoia, Bekim Sadikovic, Franco Locatelli, Marco Tartaglia
Fanconi anemia (FA) is a clinically variable and genetically heterogeneous cancer-predisposing disorder representing the most common bone marrow failure syndrome. It is caused by inactivating predominantly biallelic mutations involving >20 genes encoding proteins with roles in the FA/BRCA DNA repair pathway. Molecular diagnosis of FA is challenging due to the wide spectrum of the contributing gene mutations and structural rearrangements. The assessment of chromosomal fragility after exposure to DNA cross-linking agents is generally required to definitively confirm diagnosis...
October 11, 2023: American Journal of Human Genetics
https://read.qxmd.com/read/37861290/prmt5-inhibitors-regulate-dna-damage-repair-pathways-in-cancer-cells-and-improve-response-to-parp-inhibition-and-chemotherapies
#24
JOURNAL ARTICLE
Jack Carter, Michael Hulse, Monisha Sivakumar, Jessica Burtell, Venkat Thodima, Min Wang, Anjana Agarwal, Komali Vykuntam, Jacob Spruance, Neha Bhagwat, Joseph Rager, Bruce A Ruggeri, Peggy Scherle, Koichi Ito
Expression of PRMT5 is highly positively correlated to DNA damage repair (DDR) and DNA replication pathway genes in many types of cancer cells, including ovarian and breast cancer. In the present study, we investigated whether pharmacological inhibition of PRMT5 downregulates DDR/DNA replication pathway genes and sensitizes cancer cells to chemotherapy and PARP inhibition. Potent and selective PRMT5 inhibitors significantly downregulate expression of multiple DDR and DNA replication genes in cancer cells. Mechanistically, PRMT5 inhibition reduces the presence of PRMT5 and H4R3me2s on promoter regions of DDR genes such as BRCA1/2, RAD51 and ATM...
October 20, 2023: Cancer Res Commun
https://read.qxmd.com/read/37834346/the-cgas-sting-ifn-1-response-in-squamous-head-and-neck-cancer-cells-after-genotoxic-challenges-and-abrogation-of-the-atr-chk1-and-fanconi-anemia-axis
#25
JOURNAL ARTICLE
Sebastian Zahnreich, Soumia El Guerzyfy, Justus Kaufmann, Heinz Schmidberger
Locally advanced head and neck squamous cell carcinomas (HNSCC) are often refractory to platinum-based radiochemotherapy and new immuno-oncological strategies. To stimulate immunogenic antitumor responses in HNSCC patients, we investigated the cGAS/STING/IFN-1 signaling pathway after genotoxic treatments and concomitant abrogation of the DNA damage response (DDR). For this purpose, FaDu and UM-SCC1 cells were exposed to X-rays or cisplatin and treated with an ATR or Chk1 inhibitor, or by Fanconi anemia gene A knockout (FANCA ko)...
October 4, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37803855/-diagnosis-status-and-genetic-characteristics-analysis-of-fanconi-anemia-in-china
#26
JOURNAL ARTICLE
N Li, D X Hu, X Qin, Y P Zhu, M Zhou, L He, L X Chang, X J Xu, Y Dai, X Y Cao, K Chen, H M Wang, C J Wang, Y L He, X W Qian, L P Xu, J Chen
Objective: To analyze the clinical and molecular diagnostic status of Fanconi anemia (FA) in China. Methods: The General situation, clinical manifestations and chromosome breakage test and genetic test results of 107 pediatric FA cases registered in the Chinese Blood and Marrow Transplantation Registry Group (CBMTRG) and the Chinese Children Blood and Marrow Transplantation Registry Group (CCBMTRG) from August 2009 to January 2022 were analyzed retrospectively. Children with FANCA gene variants were divided into mild and severe groups based on the type of variant, and Wilcoxon-test was used to compare the phenotypic differences between groups...
October 2, 2023: Zhonghua Er Ke za Zhi. Chinese Journal of Pediatrics
https://read.qxmd.com/read/37799138/erratum-a-self-repair-history-compensatory-effect-of-a-de-novo-variant-on-the-fanca-c-2778-83c-g-splicing-mutation
#27
(no author information available yet)
[This corrects the article DOI: 10.3389/fgene.2023.1209138.].
2023: Frontiers in Genetics
https://read.qxmd.com/read/37795760/expression-of-dna-damage-response-pathway-genes-in-diffuse-large-b-cell-lymphoma-the-potential-for-exploiting-synthetic-lethality
#28
JOURNAL ARTICLE
Adnan Mansoor, Hamza Kamran, Hassan Rizwan, Ariz Akhter, Tariq Mahmood Roshan, Meer-Taher Shabani-Rad, Prashant Bavi, Douglas Stewart
Diffuse large B-cell lymphoma (DLBCL) and follicular lymphoma (FL) are two of the most prevalent non-Hodgkin's lymphoma subtypes. Despite advances, treatment resistance and patient relapse remain challenging issues. Our study aimed to scrutinize gene expression distinctions between DLBCL and FL, employing a cohort of 53 DLBCL and 104 FL samples that underwent rigorous screening for genetic anomalies. The NanoString nCounter assay evaluated 730 cancer-associated genes, focusing on densely tumorous areas in diagnostic samples...
October 5, 2023: Hematological Oncology
https://read.qxmd.com/read/37790699/phenotype-reversion-as-natural-gene-therapy-in-fanconi-anemia-by-a-gene-conversion-event
#29
JOURNAL ARTICLE
Ilaria Persico, Ilaria Fiscarelli, Alessandra Pelle, Michela Faleschini, Barbara Pasini, Anna Savoia, Roberta Bottega
Somatic mosaicism appears as a recurrent phenomenon among patients suffering from Fanconi anemia (FA), but its direct prognostic significance mostly remains an open question. The clinical picture of FA mosaic subjects could indeed vary from just mild features to severe hematologic failure. Here, we illustrate the case of a proband whose FA familiarity, modest signs (absence of hematological anomalies and fertility issues), and chromosome fragility test transition to negative overtime were suggestive of somatic mosaicism...
2023: Frontiers in Genetics
https://read.qxmd.com/read/37725782/exceptional-response-to-olaparib-a-case-report-of-metastatic-esophageal-squamous-cell-carcinoma-in-a-patient-with-fanconi-anemia-germline-fanca-mutation-and-somatic-brca2-mutations
#30
JOURNAL ARTICLE
Lucy R Haggstrom, Kathy Tucker, Rachel Williams, Adam Nelson, Rebecca Walsh, Daniel Brungs, Morteza Aghmesheh
No abstract text is available yet for this article.
September 2023: JCO Precision Oncology
https://read.qxmd.com/read/37661832/a-systematic-approach-identifies-p53-dream-target-genes-associated-with-blood-or-brain-abnormalities
#31
JOURNAL ARTICLE
Jeanne Rakotopare, Vincent Lejour, Carla Duval, Eliana Eldawra, Hugues Escoffier, Franck Toledo
p53 is a tumor suppressor, but mouse models revealed that increased p53 activity may cause bone marrow failure, likely through DREAM-mediated gene repression. Here we designed a systematic approach to identify p53-DREAM targets whose repression might contribute to abnormal hematopoiesis. We used gene ontology to analyze transcriptomic changes associated with bone marrow cell differentiation, then ChIP-seq data to identify DREAM-bound promoters. We next created positional frequency matrices to identify evolutionary conserved sequence elements potentially bound by DREAM...
September 1, 2023: Disease Models & Mechanisms
https://read.qxmd.com/read/37642678/gene-environment-analyses-in-a-uk-biobank-skin-cancer-cohort-identifies-important-snps-in-dna-repair-genes-that-may-help-prognosticate-disease-risk
#32
JOURNAL ARTICLE
Richie Jeremian, Pingxing Xie, Misha Fotovati, Philippe Lefrançois, Ivan V Litvinov
BACKGROUND: Despite well-established relationships between sun exposure and skin cancer pathogenesis/progression, specific gene-environment interactions in at-risk individuals remain poorly-understood. METHODS: We leveraged a UK Biobank cohort of basal cell carcinoma [BCC, n=17,221], cutaneous squamous cell carcinoma [cSCC, n=2,331]), melanoma in-situ (M-is, n=1,158), invasive melanoma (M-inv, n=3,798) and healthy controls (n=448,164) to quantify the synergistic involvement of genetic and environmental factors influencing disease risk...
August 29, 2023: Cancer Epidemiology, Biomarkers & Prevention
https://read.qxmd.com/read/37623222/the-spectrum-of-germline-nucleotide-variants-in-gastric-cancer-patients-in-the-kyrgyz-republic
#33
JOURNAL ARTICLE
Airat Bilyalov, Sergey Nikolaev, Anastasiia Danishevich, Igor Khatkov, Komron Makhmudov, Zhainagul Isakova, Nurbek Bakirov, Ernis Omurbaev, Alena Osipova, Ramaldan Ramaldanov, Elena Shagimardanova, Andrey Kiyasov, Oleg Gusev, Natalia Bodunova
Gastric cancer is a major challenge in modern oncology due to its high detection rate and prevalence. While sporadic cases make up the majority of gastric cancer, hereditary gastric cancer is caused by germline mutations in several genes linked to different syndromes. Thus, identifying hereditary forms of gastric cancer is considered crucial globally. A survey study using NGS-based analysis was conducted to determine the frequency of different types of hereditary gastric cancer in the yet-unstudied Kyrgyz population...
July 31, 2023: Current Issues in Molecular Biology
https://read.qxmd.com/read/37620397/fanconi-anemia-associated-protein-20-faap20-plays-an-essential-role-in-homology-directed-repair-of-dna-double-strand-breaks
#34
JOURNAL ARTICLE
Anna Palovcak, Fenghua Yuan, Ramiro Verdun, Liang Luo, Yanbin Zhang
FAAP20 is a Fanconi anemia (FA) protein that associates with the FA core complex to promote FANCD2/FANCI monoubiquitination and activate the damage response to interstrand crosslink damage. Here, we report that FAAP20 has a marked role in homologous recombination at a DNA double-strand break not associated with an ICL and separable from its binding partner FANCA. While FAAP20's role in homologous recombination is not dependent on FANCA, we found that FAAP20 stimulates FANCA's biochemical activity in vitro and participates in the single-strand annealing pathway of double-strand break repair in a FANCA-dependent manner...
August 24, 2023: Communications Biology
https://read.qxmd.com/read/37611378/next-generation-sequencing-reveals-a-high-prevalence-of-pathogenic-mutations-in-homologous-recombination-dna-damage-repair-genes-among-patients-with-uterine-sarcoma
#35
JOURNAL ARTICLE
Dimitrios Nasioudis, Nawar A Latif, Emily M Ko, Lori Cory, Sarah H Kim, Lainie Martin, Fiona Simpkins, Robert Giuntoli
OBJECTIVE: Investigate the incidence of homologous recombination DNA damage response (HR-DDR) genomic alterations among patients with uterine sarcoma. METHODS: The American Association for Cancer Research GENIE v13.0 database was accessed and patients with uterine leiomyosarcoma, adenosarcoma, undifferentiated uterine sarcoma, high-grade endometrial stromal sarcoma, low-grade endometrial stromal sarcoma, and endometrial stromal sarcoma not otherwise specified were identified...
August 21, 2023: Gynecologic Oncology
https://read.qxmd.com/read/37580626/fanconi-anemia-dna-crosslink-repair-factors-protect-against-line-1-retrotransposition-during-mouse-development
#36
JOURNAL ARTICLE
Nazareno Bona, Gerry P Crossan
Long interspersed nuclear element 1 (LINE-1) is the only autonomous retrotransposon in humans and new integrations are a major source of genetic variation between individuals. These events can also lead to de novo germline mutations, giving rise to heritable genetic diseases. Recently, a role for DNA repair in regulating these events has been identified. Here we find that Fanconi anemia (FA) DNA crosslink repair factors act in a common pathway to prevent retrotransposition. We purify recombinant SLX4-XPF-ERCC1, the crosslink repair incision complex, and find that it cleaves putative nucleic acid intermediates of retrotransposition...
August 14, 2023: Nature Structural & Molecular Biology
https://read.qxmd.com/read/37573408/fanca-deficiency-promotes-leukaemic-progression-by-allowing-the-emergence-of-cells-carrying-oncogenic-driver-mutations
#37
JOURNAL ARTICLE
Patrycja Pawlikowska, Laure Delestré, Sebastian Gregoricchio, Alessia Oppezzo, Michela Esposito, M' Boyba Diop, Filippo Rosselli, Christel Guillouf
Leukaemia is caused by the clonal evolution of a cell that accumulates mutations/genomic rearrangements, allowing unrestrained cell growth. However, recent identification of leukaemic mutations in the blood cells of healthy individuals revealed that additional events are required to expand the mutated clones for overt leukaemia. Here, we assessed the functional consequences of deleting the Fanconi anaemia A (Fanca) gene, which encodes a DNA damage response protein, in Spi1 transgenic mice that develop preleukaemic syndrome...
August 12, 2023: Oncogene
https://read.qxmd.com/read/37573343/metastasising-ameloblastoma-or-ameloblastic-carcinoma-a-case-report-with-mutation-analyses
#38
REVIEW
Pavel Hurník, Barbora Moldovan Putnová, Tereza Ševčíková, Eva Hrubá, Iveta Putnová, Josef Škarda, Martin Havel, Oldřich Res, Jakub Cvek, Marcela Buchtová, Jan Štembírek
BACKGROUND: Ameloblastic carcinoma and metastasising ameloblastoma are rare epithelial odontogenic tumours with aggressive features. Distinguishing between these two lesions is often clinically difficult but necessary to predict tumour behaviour or to plan future therapy. Here, we provide a brief review of the literature available on these two types of lesions and present a new case report of a young man with an ameloblastoma displaying metastatic features. We also use this case to illustrate the similarities and differences between these two types of tumours and the difficulties of their differential diagnosis...
August 12, 2023: BMC Oral Health
https://read.qxmd.com/read/37566130/a-comprehensive-analysis-of-fanconi-anemia-genes-in-chinese-patients-with-high-risk-hereditary-breast-cancer
#39
JOURNAL ARTICLE
Qiao-Yan Zhu, Pu-Chun Li, Yi-Fan Zhu, Jia-Ni Pan, Rong Wang, Xiao-Lin Li, Wei-Wu Ye, Xiao-Wen Ding, Xiao-Jia Wang, Wen-Ming Cao
BACKGROUND: Four Fanconi anemia (FA) genes (BRCA1, BRCA2, PALB2 and RAD51C) are defined as breast cancer (BC) susceptibility genes. Other FA genes have been inconsistently associated with BC. Thus, the role of other FA genes in BC should be explored in specific populations. METHODS: Mutations in 16 FA genes were screened with a 98-gene panel sequencing assay in a cohort of 1481 Chinese patients with high-risk hereditary BC. The association between mutations and clinicopathological characteristics as well as prognosis was analyzed...
August 11, 2023: Journal of Cancer Research and Clinical Oncology
https://read.qxmd.com/read/37549632/brca-deficient-metastatic-prostate-cancer-has-an-adverse-prognosis-and-distinct-genomic-phenotype
#40
JOURNAL ARTICLE
Heidi Fettke, Chao Dai, Edmond M Kwan, Tiantian Zheng, Pan Du, Nicole Ng, Patricia Bukczynska, Maria Docanto, Louise Kostos, Siavash Foroughi, Stephen Brown, Lisa-Jane K Graham, Kate Mahon, Lisa G Horvath, Shidong Jia, Manish Kohli, Arun A Azad
BACKGROUND: Genomic alterations in DNA damage response (DDR) genes are common in metastatic castration-resistant prostate cancer (mCRPC). Understanding how these genomic events impact prognosis and/or treatment response is vital for optimising clinical outcomes. METHODS: Targeted sequencing was performed on 407 plasma samples from 375 men with mCRPC. Using the CLIA-certified PredicineCARE™ cell-free DNA (cfDNA) assay, pathogenic alterations in 152 key genes (including 27 DDR-related genes) were assessed, as was the presence and mechanisms of biallelic loss in BRCA2...
August 5, 2023: EBioMedicine
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