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https://www.readbyqxmd.com/read/28211312/olivibacter-composti-sp-nov-isolated-from-compost-collected-at-a-greenhouse
#1
Shih-Yao Lin, Asif Hameed, Kai-Yeh Chiu, You-Cheng Liu, Yi-Han Hsu, Wei-An Lai, Chiu-Chung Young
A polyphasic approach was used to characterize a presumably novel bacterium, designated strain CC-KYC063T, isolated from a compost sample collected at a greenhouse facility within Taiwan. Strain CC-KYC063T was Gram-stain-negative and aerobic, able to grow at 15-37 °C (optimal 30 °C), at pH 7.0-9.0 (optimal pH 7.0) and with 0-2 % (w/v) NaCl. The 16S rRNA gene sequence of strain CC-KYC063T showed highest similarity to Olivibacter ginsengisoli Gsoil 060T (96.2 %) and Olivibacter terrae Jip13T (95.5 %)...
January 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28150574/emticicia-aquatilis-sp-nov-isolated-from-a-freshwater-sample-near-donghaksa-temple
#2
Hien T T Ngo, Huan Trinh, Jung-Eun Yang, Kyung-Hwa Won, Dong-Hun Chu, MooChang Kook, Tae-Hoo Yi
A Gram-stain-negative, facultative anaerobic, non-motile, rod-shaped and yellow-pigmented bacterium, designated strain THG-DN6.14T, was isolated from a freshwater sample near Donghaksa temple in Daejeon, South Korea. According to 16S rRNA gene sequence comparisons, strain THG-DN6.14T was found to be most closely related to Emticicia sediminis JBR12T (99.1 % sequence similarity), Emticicia oligotrophica DSM 17448T (97.6 %), Emticicia aquatica HMF2925T (96.5 %), and Emticicia ginsengisoli Gsoil 085T (94.4 %)...
February 1, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28141505/sphingobacterium-cellulitidis-sp-nov-isolated-from-clinical-and-environmental-sources
#3
Geert Huys, Prashant Purohit, Chuan Hao Tan, Cindy Snauwaert, Paul De Vos, Huda Al Saffar, Ina'am Al Obaid, M John Albert, Hans-Jurgen Busse, Torsten Seemann
We have determined the taxonomic position of two isolates of the genus Sphingobacterium. The first isolate, R-53603T, was obtained from purulent discharge from the toe of a cellulitis patient in Kuwait. Comparative 16S rRNA gene sequence analysis revealed 99.87% identity of R-53603T with environmental isolate P031 (= R-53745) originating from activated sludge in Singapore. Both isolates were phylogenetically positioned on the same sub-branch. Highest 16S rRNA gene sequence similarity was found with Sphingobacterium mizutaii LMG 8340T (98...
January 28, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28141487/sporosarcina-terrae-sp-nov-isolated-from-the-orchard-soil
#4
Ying Sun, Qi Zhao, Dejuan Zhi, Zining Wang, Yajun Wang, Qinjian Xie, Zhengrong Wu, Xin Wang, Yang Li, Lan Yu, Hui Yang, Jianping Zhou, Hongyu Li
A Gram-stain-positive, motile and rod shaped bacterium, designated strain LZ2T, was isolated from a orchard soil sample of Laizhou city, Shandong province, China. On the basis of 16S rRNA gene sequence analysis, strain LZ2T was closely related to members of the genus Sporosarcina, sharing the highest levels of sequence similarity with Sporosarcina pasteurii NCIMB 8841T (98.8 %), Sporosarcina soli I80T (95.9 %). The values for DNA-DNA relatedness between strain LZ2T and Sporosarcina pasteurii NCIMB 8841T was 39...
January 29, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28141483/pontibacter-aurantiacus-sp-nov-isolated-from-hexachlorocyclohexane-hch-contaminated-soil
#5
Priya Singh, Rashmi Kumari, Namita Nayyar, Rup Lal
Strain NP1T, a Gram-stain negative, orange-coloured, rod-shaped bacterium was isolated from hexacholorocyclohexane (HCH) contaminated soil sediment collected from Ummari village, Lucknow, Uttar Pradesh, India. The 16S rRNA gene sequence analysis showed that strain NP1T clustered with members belonging to the genus Pontibacter of the order Cytophagales, family Cytophagaceae and phylum Bacteriodetes. The 16S rRNA gene sequence similarity with type strains of the genus Pontibacter ranged from 98.57 to 93.95% depicting Pontibacter odishensis JC-130T (98...
January 28, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28126047/niveitalea-solisilvae-gen-nov-sp-nov-isolated-from-forest-soil-and-emended-description-of-the-genus-flavihumibacter-zhang-et-al-2010
#6
Jong Woo Hyeon, Hyo Jung Lee, Sang Eun Jeong, Ga Youn Cho, Che Ok Jeon
A gram-staining-negative and strictly aerobic bacterial strain, designated 6-4T, was isolated from forest soil in Jeju island, South Korea. Cells showing oxidase-positive and catalase-negative reactions were thin and long non-motile rods. Growth of strain 6-4T was observed at 20-35 C (optimum, 30 C) and pH 6.0-9.0 (optimum, pH 7.0). Strain 6-4T contained iso-C15:0, anteiso-C15:0, iso-C15:1 G and iso-C17:0 3-OH as the major fatty acids and menaquinone-7 (MK-7) as the sole isoprenoid quinone. Phosphatidylethanolamine was the major polar lipid and five unidentified aminolipids, one unidentified aminophospholipid and one unidentified lipid were also detected as the minor polar lipids...
January 26, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28124781/hymenobacter-daeguensis-sp-nov-isolated-from-river-water
#7
Leonid N Ten, Yeon-Hee Lee, Jae-Jin Lee, Su-Jin Park, Seung-Yeol Lee, Sangkyu Park, DaeSung Lee, In-Kyu Kang, Hee-Young Jung
A Gram-stain-negative, non-motile, non-spore-forming, rodshaped, aerobic bacterial strain, designated 16F3Y-2(T), was isolated from the Han River, South Korea, and was characterized taxonomically using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain 16F3Y-2(T) belonged to the family Cytophagaceae in the phylum Bacteroidetes and was most closely related to 'Hymenobacter terrae' DG7A (98.01%), H. soli PB17(T) (97.26%), H. glaciei VUG-A130(T) (96.78%), H. antarcticus VUG-A42aa(T) (96...
January 26, 2017: Journal of Microbiology / the Microbiological Society of Korea
https://www.readbyqxmd.com/read/28120194/cyclobacterium-sediminis-sp-nov-isolated-from-a-sea-cucumber-aquaculture-farm-and-emended-description-of-the-genus-cyclobacterium
#8
Seyeon Shin, Hyung-Yeel Kahng
An aerobic, Gram-negative bacterium, designated strain SD70(T), was isolated from sea cucumber aquaculture farm sediment in Taean, Korea, and its taxonomic status was established by undertaking a polyphasic study. Cells of strain SD70(T) were non-motile, catalase-, and oxidase-positive, non-spore-forming, and horseshoe-shaped. Optimal growth was observed under 25-30°C, pH 7.0-8.0, and 3.0-5.0% (w/v) NaCl conditions. Phylogenetic analyses based on 16S rRNA gene sequences revealed that strain SD70(T) fell within an evolutionary group comprising species of the genus Cyclobacterium...
February 2017: Journal of Microbiology / the Microbiological Society of Korea
https://www.readbyqxmd.com/read/28118143/rubrivirga-profundi-sp-nov-isolated-from-deep-sea-water-and-emended-description-of-the-genus-rubrivirga
#9
Jaeho Song, Yochan Joung, Sanghwa Park, Jang-Cheon Cho, Kazuhiro Kogure
A Gram-staining-negative, rod-shaped, facultatively anaerobic, non-motile and pale-red-pigmented bacterium, designated SAORIC-476T, was isolated from deep-sea water from the Pacific Ocean. 16S rRNA gene sequence analyses showed that strain SAORIC-476T was most closely related to Rubrivirga marina SAORIC-28T (96.8 % similarity) and formed a robust phylogenetic clade with Rubrivirga marina of the family Rhodothermaceae. Optimal growth of strain SAORIC-476T was observed at 25 °C, pH 7.5 and in the presence of 3...
December 9, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28113041/spirosoma-knui-sp-nov-a-radiation-resistant-bacterium-isolated-from-the-han-river
#10
Jae-Jin Lee, Yeon-Hee Lee, Su-Jin Park, Seung-Yeol Lee, Byung-Oh Kim, Leonid N Ten, Myung Kyum Kim, Hee-Young Jung
A Gram-stain-negative, non-motile, non-spore-forming, rod-shaped, aerobic bacterium, designated 15J8-12T, was isolated from a water sample after exposure to 3 kGy of gamma radiation. The strain showed resistance to gamma radiation with a D10 value of 4.7 kGy. Comparative 16S rRNA gene sequence analysis showed that strain 15J8-12T belonged to the family Cytophagaceae, phylum Bacteroidetes, and was most closely related to 'Spirosoma fluminis' 15J17 (97.92 %) and Spirosoma arcticum R2-35T (92.22 %). The G+C content of the genomic DNA of strain 15J8-12T was 51...
January 22, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109207/rhodohalobacter-halophilus-gen-nov-sp-nov-a-moderately-halophilic-member-of-the-family-balneolaceae
#11
Jun Xia, Zhi-Hong Xie, Christopher A Dunlap, Alejandro P Rooney, Zong-Jun Du
A novel Gram-stain-negative, rod-shaped, facultatively anaerobic, oxidase-negative and catalase-positive bacterium, designated JZ3C29T, was isolated from a saltern located in Feicheng, China. Strain JZ3C29T was tolerant to moderate salt conditions. Optimal growth occurred at 40 °C (range 20-50 °C) and pH 7.5-8.5 (range pH 7.0-9.0) with 8-10 % (w/v) NaCl (range 2-16 %). Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain JZ3C29T shared highest similarity with Gracilimonas tropica CL-CB462T (90...
January 19, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109206/proposal-of-mucilaginibacter-galii-sp-nov-isolated-from-leaves-of-galium-album
#12
Ebru L Aydogan, Hans-Jürgen Busse, Gerald Moser, Christoph Müller, Peter Kämpfer, Stefanie P Glaeser
A pale pink pigmented, Gram-stain-negative, rod-shaped, non-spore forming bacterial strain, PP-F2F-G47T, was isolated from the phyllosphere of the herbaceous plant Galium album. Phylogenetic analysis based on nearly full-length 16S rRNA gene sequence showed highest sequence similarity to type strains of the species Mucilaginibacter daejeonensis (96.2 %), Mucilaginibacter dorajii (95.7 %), and Mucilaginibacter phyllosphaerae (95.5 %). 16S rRNA gene-sequence similarities to all other type strains were below 95...
January 19, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109203/pedobacter-lusitanus-sp-nov-a-new-bacterial-species-isolated-from-sludge-of-a-deactivated-uranium-mine-in-portugal
#13
Cláudia Covas, Tânia Caetano, Andreia Cruz, Tiago Santos, Liliana Dias, Guenter Klein, Amir Abdulmawjood, Luiz Rodríguez-Alcalá, Lígia Pimentel, Ana Gomes, Ana Cristina Freitas, Alba Garcia-Serrano, Javier Fontecha, Sónia Mendo
Strain NL19T is a Gram negative aerobic bacterium that was isolated from sludge of a deactivated uranium mine in Portugal. 16S rRNA gene sequence analysis revealed that strain NL19T is a member of the genus Pedobacter and closely related to the strains Pedobacter himalayensis MTCC 6384T, Pedobacter cryoconitis DSM 14825T, Pedobacter westerhofensis DSM 19036T and P. hartonius DSM 19033T. It has a DNA G+C content of 40.8 mol%, which agreed with the genus description. The main fatty acids include C16:1 9c, C14:1 9c, C4:0, Iso-C17:0, Iso-C17:0 3-OH, C16:0, Anteiso-C15:0 and Iso-C15:0 3-OH...
January 21, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28109202/algoriphagus-resistens-sp-nov-isolated-from-marine-sediment
#14
Ji-Ru Han, Jin-Xin Zhao, Zong-Jie Wang, Guan-Jun Chen, Zong-Jun Du
Strain NH1T, a pink-pigmented, facultatively anaerobic, heterotrophic, catalase-positive and oxidase-negative, Gram-stain-negative marine bacterium, was isolated from marine sediment in the coast of Weihai, China. Cells of strain NH1T was rod-shaped, 0.8-2.0 µm in length and 0.5 µm in width. The strain able to grow at 13-37 °C, pH 5.5-8.5, in the presence of 0.0-8.0% (w/v) NaCl. Optimal growth was observed at 28 °C, with 3.0% (w/v) NaCl and pH 6.5-7.0. Nitrate was reduced. The G+C content of the DNA was 41...
January 19, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28068216/spirosoma-lacussanchae-sp-nov-a-phosphate-solubilizing-bacterium-isolated-from-a-fresh-water-reservoir
#15
Yong Li, Meng-Jie Ai, Ye Sun, Yu-Qin Zhang, Jian-Qiang Zhang
A phosphate-solubilizing bacterium, designated CPCC 100624T, was isolated from a fresh water reservoir in south-west China. The 16S rRNA gene sequence comparison of strain CPCC 100624T with the available sequences in the GenBank database showed that the isolate was closely related to the members of the genus Spirosoma. In the phylogenetic tree based on 16S rRNA gene sequences, strain CPCC 100624T formed a stable phylogenetic subclade with Spirosoma soli MIMBbqt12T within the genus Spirosoma, which indicated that strain CPCC 100624T could be identified as a member of the genus Spirosoma...
January 6, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28068214/paenibacillus-rhizoplanae-sp-nov-isolated-from-the-rhizosphere-of-zea-mays
#16
Peter Kämpfer, Hans-Jürgen Busse, John A McInroy, Chia-Hui Hu, Joseph W Kloepper, Stefanie P Glaeser
A Gram-positive staining, aerobic, endospore-forming bacterial strain, isolated from the rhizosphere of Zea mays was studied for its detailed taxonomic allocation. Based on 16S rRNA gene sequence similarity comparisons, strain JJ-64T was shown to be a member of the genus Paenibacillus, most closely related to the type strains of Paenibacillus silagei (99%) and Paenibacillus borealis (97.5%). The 16S rRNA gene sequence similarity to all other Paenibacillus species was ≤ 97.5%. DNA-DNA hybridization values to the type strains of P...
January 6, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28056226/flectobacillus-pallidus-sp-nov-isolated-from-a-spring
#17
Shih-Yi Sheu, Li-Pin Liu, Wen-Ming Chen
A novel bacterial strain MVW-6T was isolated from a spring in Taiwan and characterized using a polyphasic taxonomy approach. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain MVW-6T belonged to the genus Flectobacillus and showed the highest levels of sequence similarity with respect to Flectobacillus lacus CL-GP79T (98.2 %) and Flectobacillus fontis MIB-4T (97.4 %). Cells of strain MVW-6T were Gram-staining-negative, aerobic, non-motile rods that were covered by large capsules and formed light pink-colored colonies...
January 5, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28036251/paraliobacillus-sediminis-sp-nov-isolated-from-sediment-in-east-china-sea
#18
Wen-Rui Cao, Ling-Yun Guo, Zong-Jun Du, Anindita Das, Gaowa Saren, Ming-Yu Jiang, Christopher A Dunlap, Alejandro P Rooney, Xin-Ke Yu, Tie-Gang Li
A Gram-strain-positive, facultatively anaerobic, motile, endospore-forming, slight halophile bacterium, designated strain 126C4T, was isolated from sediment of the East China Sea. The strain was catalase-positive and oxidase-negative. Optimal growth occurred at 28-30℃, pH 7.0-7.5 and in the presence of 3-5% (w/v) NaCl. Phylogenetic analyses based on 16S rRNA gene sequence comparisons showed that strain 126C4T was a member of the genus Paraliobacillus, with 16S rRNA gene sequence similarity to the type strains of the two described species of the genus, Paraliobacillus quinghaiensis YIM-C158T (sequence similarity 96...
December 30, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28032538/alkalicoccus-halolimnae-gen-nov-sp-nov-a-moderately-halophilic-bacterium-isolated-from-a-salt-lake-and-reclassification-of-bacillus-saliphilus-as-alkalicoccus-saliphilus-comb-nov
#19
Baisuo Zhao, Weidong Lu, Shanshan Zhang, Kang Liu, Yanchun Yan, Jun Li
A Gram-stain-positive, cocci-shaped, non-spore-forming, and moderately halophilic bacterium, designed BZ-SZ-XJ29T, was isolated from a salt lake of China. On the basis of 16S rRNA gene sequence similarity, the most closely phylogenetic relatives were Bacillus saliphilus 6AGT (97.3 %) and other five Bacillus species (95.4-96.3 %). However, it shared only 89.5 % with Bacillus subtilis subsp. subtilis DSM 10T, indicating that this isolate might not be a member of Bacillus genus. The genomic DNA G+C content was 40...
December 29, 2016: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/27995868/pedobacter-jamesrossensis-sp-nov-pedobacter-lithocola-sp-nov-pedobacter-mendelii-sp-nov-and-pedobacter-petrophilus-sp-nov-isolated-from-antarctic-environment
#20
Pavel Švec, Stanislava Králová, Hans-Jürgen Busse, Tanita Kleinhagauer, Roman Pantůček, Ivana Mašlaňová, Margo Cnockaert, Peter Vandamme, Eva Staňková, Tereza Gelbíčová, Pavla Holochová, Miloš Barták, Kamila Kýrová, Ivo Sedláček
A taxonomic study performed on 17 Gram-stain-negative rod-shaped bacterial strains originating from Antarctic environment is described. Initial phylogenetic analysis using 16S rRNA gene sequencing differentiated the strains into four groups belonging into the genus Pedobacter but they were separated from all hitherto described Pedobacter spp. Group I (n=8) was closest to Pedobacter aquatilis (97.8 % 16S rRNA gene sequence similarity). Group II (n=2) and group III (n=4) were closely related (98.8 % 16S rRNA gene sequence similarity) and showed Pedobacter jejuensis as their common nearest neighbour...
December 20, 2016: International Journal of Systematic and Evolutionary Microbiology
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