keyword
https://read.qxmd.com/read/34960758/synergistic-interferon-alpha-based-combinations-for-treatment-of-sars-cov-2-and-other-viral-infections
#21
JOURNAL ARTICLE
Aleksandr Ianevski, Rouan Yao, Eva Zusinaite, Laura Sandra Lello, Sainan Wang, Eunji Jo, Jaewon Yang, Erlend Ravlo, Wei Wang, Hilde Lysvand, Kirsti Løseth, Valentyn Oksenych, Tanel Tenson, Marc P Windisch, Minna M Poranen, Anni I Nieminen, Svein Arne Nordbø, Mona Høysæter Fenstad, Gunnveig Grødeland, Pål Aukrust, Marius Trøseid, Anu Kantele, Eglė Lastauskienė, Astra Vitkauskienė, Nicolas Legrand, Andres Merits, Magnar Bjørås, Denis E Kainov
BACKGROUND: There is an urgent need for new antivirals with powerful therapeutic potential and tolerable side effects. METHODS: Here, we tested the antiviral properties of interferons (IFNs), alone and with other drugs in vitro. RESULTS: While IFNs alone were insufficient to completely abolish replication of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), IFNα, in combination with remdesivir, EIDD-2801, camostat, cycloheximide, or convalescent serum, proved to be more effective...
December 11, 2021: Viruses
https://read.qxmd.com/read/34938188/pre-steady-state-kinetics-of-the-sars-cov-2-main-protease-as-a-powerful-tool-for-antiviral-drug-discovery
#22
JOURNAL ARTICLE
Maria Yu Zakharova, Alexandra A Kuznetsova, Victoria I Uvarova, Anastasiia D Fomina, Liubov I Kozlovskaya, Elena N Kaliberda, Inna N Kurbatskaia, Ivan V Smirnov, Anatoly A Bulygin, Vera D Knorre, Olga S Fedorova, Alexandre Varnek, Dmitry I Osolodkin, Aydar A Ishmukhametov, Alexey M Egorov, Alexander G Gabibov, Nikita A Kuznetsov
The design of effective target-specific drugs for COVID-19 treatment has become an intriguing challenge for modern science. The SARS-CoV-2 main protease, Mpro , responsible for the processing of SARS-CoV-2 polyproteins and production of individual components of viral replication machinery, is an attractive candidate target for drug discovery. Specific Mpro inhibitors have turned out to be promising anticoronaviral agents. Thus, an effective platform for quantitative screening of Mpro -targeting molecules is urgently needed...
2021: Frontiers in Pharmacology
https://read.qxmd.com/read/34933885/-contributions-of-cathepsin-a-and-carboxylesterase-1-to-the-hydrolysis-of-tenofovir-alafenamide-in-the-human-liver-and-the-effect-of-ces1-genetic-variation-on-tenofovir-alafenamide-hydrolysis
#23
JOURNAL ARTICLE
Jiapeng Li, Jian Shi, Jingcheng Xiao, Lana Tran, Xinwen Wang, Hao-Jie Zhu
The prodrug tenofovir alafenamide (TAF) is a first-line antiviral agent for the treatment of chronic hepatitis B infection. TAF activation involves multiple steps, and the first step is an ester hydrolysis reaction catalyzed by hydrolases. This study was to determine the contributions of carboxylesterase 1 (CES1) and cathepsin A (CatA) to TAF hydrolysis in the human liver. Our in vitro incubation studies showed that both CatA and CES1 catalyzed TAF hydrolysis in a pH-dependent manner. At their physiological pH environment, the activity of CatA (pH 5...
December 21, 2021: Drug Metabolism and Disposition: the Biological Fate of Chemicals
https://read.qxmd.com/read/34913180/hypoglycemia-associated-with-direct-acting-anti-hepatitis-c-virus-drugs-an-epidemiologic-surveillance-study-of-the-fda-adverse-event-reporting-system-faers
#24
JOURNAL ARTICLE
Yu Zhou, Wenhuo Xie, Chenhua Zheng, Libin Liu, Zhou Chen, Xiaolu Wang
BACKGROUND AND OBJECTIVE: Hypoglycemia induced by direct-acting antiviral agents (DAAs) for chronic hepatitis C virus (HCV) infection is a rare but potentially life-threatening adverse reaction, which led to warnings by competent authorities. We therefore aimed to examine the hypoglycemic safety signal for DAAs. METHODS: Reports to the US Food and Drug Administration Adverse Event Reporting System (FAERS) from 1 October 2012 to 31 March 2020 were analyzed. The Medical Dictionary for Regulatory Activities was used to identify hypoglycemia cases...
May 2022: Clinical Endocrinology
https://read.qxmd.com/read/34883293/synthesis-and-structure-activity-relationship-study-of-new-biaryl-amide-derivatives-and-their-inhibitory-effects-against-hepatitis-c-virus
#25
JOURNAL ARTICLE
Yonghua Liu, Jianrui Li, Yuxi Gu, Ling Ma, Shan Cen, Zonggen Peng, Laixing Hu
A series of novel biaryl amide derivatives were synthesized and evaluated for anti-HCV virus activity. Some significant SARs were uncovered. The intensive structural modifications led to fifteen novel compounds with more potent inhibitory activity compared to the hit compounds IMB 26 and IMB1f. Among them, compound 80 was the most active, with EC50 values almost equivalent to the clinical drug telaprevir (EC50  = 15 nM). Furthermore, it also had a good safety and in vitro and oral pharmacokinetic (oral bioavailability in rats: 34%) profile, suggesting a highly drug-like nature...
December 1, 2021: European Journal of Medicinal Chemistry
https://read.qxmd.com/read/34818532/an-allosteric-inhibitor-of-bacterial-hsp70-chaperone-potentiates-antibiotics-and-mitigates-resistance
#26
JOURNAL ARTICLE
Jordan Hosfelt, Aweon Richards, Meng Zheng, Carolina Adura, Brock Nelson, Amy Yang, Allison Fay, William Resager, Beatrix Ueberheide, J Fraser Glickman, Tania J Lupoli
DnaK is the bacterial homolog of Hsp70, an ATP-dependent chaperone that helps cofactor proteins to catalyze nascent protein folding and salvage misfolded proteins. In the pathogen Mycobacterium tuberculosis, the causative agent of tuberculosis (TB), DnaK and its cofactors are proposed antimycobacterial targets, yet few small-molecule inhibitors or probes exist for these families of proteins. Here, we describe the repurposing of a drug called telaprevir that is able to allosterically inhibit the ATPase activity of DnaK and to prevent chaperone function by mimicking peptide substrates...
November 22, 2021: Cell Chemical Biology
https://read.qxmd.com/read/34518806/telaprevir-is-a-potential-drug-for-repurposing-against-sars-cov-2-computational-and-in-vitro-studies
#27
JOURNAL ARTICLE
Amal Mahmoud, Ahmed Mostafa, Ahmed A Al-Karmalawy, Ahmad Zidan, Hamada S Abulkhair, Sara H Mahmoud, Mahmoud Shehata, Mahmoud M Elhefnawi, Mohamed A Ali
Drug repurposing is an important approach to the assignment of already approved drugs for new indications. This technique bypasses some steps in the traditional drug approval system, which saves time and lives in the case of pandemics. Direct acting antivirals (DAAs) have repeatedly repurposed from treating one virus to another. In this study, 16 FDA-approved hepatitis C virus (HCV) DAA drugs were studied to explore their activities against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) human and viral targets...
September 2021: Heliyon
https://read.qxmd.com/read/34414360/rational-design-of-hybrid-sars-cov-2-main-protease-inhibitors-guided-by-the-superimposed-cocrystal-structures-with-the-peptidomimetic-inhibitors-gc-376-telaprevir-and-boceprevir
#28
JOURNAL ARTICLE
Zilei Xia, Michael Sacco, Yanmei Hu, Chunlong Ma, Xiangzhi Meng, Fushun Zhang, Tommy Szeto, Yan Xiang, Yu Chen, Jun Wang
SARS-CoV-2 main protease (Mpro ) is a cysteine protease that mediates the cleavage of viral polyproteins and is a validated antiviral drug target. Mpro is highly conserved among all seven human coronaviruses, with certain Mpro inhibitors having broad-spectrum antiviral activity. In this study, we designed two hybrid inhibitors UAWJ9-36-1 and UAWJ9-36-3 based on the superimposed X-ray crystal structures of SARS-CoV-2 Mpro with GC-376, telaprevir, and boceprevir. Both UAWJ9-36-1 and UAWJ9-36-3 showed potent binding and enzymatic inhibition against the Mpro 's from SARS-CoV-2, SARS-CoV, MERS-CoV, HCoV-OC43, HCoV-NL63, HCoV-229E, and HCoV-HKU1...
August 13, 2021: ACS Pharmacology & Translational Science
https://read.qxmd.com/read/34296543/multiscale-model-of-hepatitis-c-virus-dynamics-in-plasma-and-liver-following-combination-therapy
#29
JOURNAL ARTICLE
Xavier Woot de Trixhe, Wojciech Krzyzanski, An Vermeulen, Juan José Perez-Ruixo
This work explores the application of a physiologically structured population (PSP) framework in modeling hepatitis C virus (HCV) kinetics. To do so, a model was developed for the viral RNA load in plasma and liver as observed in 15 patients treated with a combination therapy of pegylated interferon, ribavirin, and telaprevir. By including both intracellular and extracellular processes of the HCV lifecycle, the model provided a description of the treatment effect on the intracellular HCV lifecycle. Combining PSP models with a nonlinear mixed effects approach in a single model permits a natural inclusion of the direct-acting antiviral effect on intracellular processes, which can then be integrated with the viral kinetics within the host while accounting for the interindividual variability between patients...
July 23, 2021: CPT: Pharmacometrics & Systems Pharmacology
https://read.qxmd.com/read/34254457/amino-acid-and-peptide-based-antiviral-agents
#30
JOURNAL ARTICLE
Andrzej Stanisław Skwarecki, Michał Grzegorz Nowak, Maria Jolanta Milewska
An important number of antiviral agents used in clinical practice are amino acids, short peptides, or peptidomimetics. Among them, several HIV protease inhibitors (e.g. saquinavir, indinavir), HCV protease inhibitors (e.g. boceprevir, telaprevir), and HCV NS5A protein inhibitors contributed to a signicant reduction of mortality due to AIDS and hepatitis. However, there exists a constant need for the discover of new antiviral agents and the development of existing ones, and amino acids both proteinogenic and non-proteinogenic nature serve as convenient building blocks for that purpose...
July 13, 2021: ChemMedChem
https://read.qxmd.com/read/34184537/discovery-and-optimization-of-a-4-aminopiperidine-scaffold-for-inhibition-of-hepatitis-c-virus-assembly
#31
JOURNAL ARTICLE
Adam Rolt, Daniel C Talley, Seung Bum Park, Zongyi Hu, Andrés Dulcey, Christopher Ma, Parker Irvin, Madeleine Leek, Amy Q Wang, Andrew V Stachulski, Xin Xu, Noel Southall, Marc Ferrer, T Jake Liang, Juan J Marugan
The majority of FDA-approved HCV therapeutics target the viral replicative machinery. An automated high-throughput phenotypic screen identified several small molecules as potent inhibitors of hepatitis C virus replication. Here, we disclose the discovery and optimization of a 4-aminopiperidine (4AP) scaffold targeting the assembly stages of the HCV life cycle. The original screening hit (1) demonstrates efficacy in the HCVcc assay but does not show potency prior to or during viral replication. Colocalization and infectivity studies indicate that the 4AP chemotype inhibits the assembly and release of infectious HCV...
June 29, 2021: Journal of Medicinal Chemistry
https://read.qxmd.com/read/34097489/hepatitis-c-virus-protease-inhibitors-show-differential-efficacy-and-interactions-with-remdesivir-for-treatment-of-sars-cov-2-in-vitro
#32
JOURNAL ARTICLE
Karen A Gammeltoft, Yuyong Zhou, Carlos R Duarte Hernandez, Andrea Galli, Anna Offersgaard, Rui Costa, Long V Pham, Ulrik Fahnøe, Shan Feng, Troels K H Scheel, Santseharay Ramirez, Jens Bukh, Judith M Gottwein
Antivirals targeting SARS-CoV-2 could improve treatment of COVID-19. We evaluated efficacy of clinically relevant hepatitis C virus (HCV) NS3 protease inhibitors (PI) against SARS-CoV-2 and their interactions with remdesivir, the only direct-acting antiviral approved for COVID-19 treatment. HCV PI showed differential potency in short-term treatment assays based on detection of SARS-CoV-2 Spike protein in VeroE6 cells. Linear PI boceprevir, telaprevir and narlaprevir had 50% effective concentrations (EC50) of ∼40 μM...
June 7, 2021: Antimicrobial Agents and Chemotherapy
https://read.qxmd.com/read/34041486/repurposing-the-hcv-ns3-4a-protease-drug-boceprevir-as-covid-19-therapeutics
#33
JOURNAL ARTICLE
Rick Oerlemans, Angel Jonathan Ruiz-Moreno, Yingying Cong, Nilima Dinesh Kumar, Marco A Velasco-Velazquez, Constantinos G Neochoritis, Jolanda Smith, Fulvio Reggiori, Matthew R Groves, Alexander Dömling
The rapid growth of COVID-19 cases is causing an increasing death toll and also paralyzing the world economy. De novo drug discovery takes years to move from idea and/or pre-clinic to market, and it is not a short-term solution for the current SARS-CoV-2 pandemic. Drug repurposing is perhaps the only short-term solution, while vaccination is a middle-term solution. Here, we describe the discovery path of the HCV NS3-4A protease inhibitors boceprevir and telaprevir as SARS-CoV-2 main protease (3CLpro) inhibitors...
December 21, 2020: RSC medicinal chemistry
https://read.qxmd.com/read/33910679/the-serine-peptidase-inhibitor-n-%C3%AF-tosyl-l-phenylalanine-chloromethyl-ketone-tpck-affects-the-cell-biology-of-candida-haemulonii-species-complex
#34
JOURNAL ARTICLE
X M Souto, L S Ramos, S S C Oliveira, M H Branquinha, A L S Santos
Candida haemulonii species complex (C. haemulonii, C. haemulonii var. vulnera and Candida duobushaemulonii) is composed by emerging and multidrug-resistant (MDR) yeasts. Candidiasis, the disease caused by these species, is difficult to treat and culminates in clinical failures and patient death. It is well-known that Candida peptidases play important roles in the fungus-host interactions, and hence these enzymes are promising targets for developing new antifungal drugs. Recently, serine-type peptidases were described in clinical isolates of C...
May 2021: Fungal Biology
https://read.qxmd.com/read/33842190/in-search-of-drugs-to-alleviate-suppression-of-the-host-s-innate-immune-responses-against-sars-cov-2-using-a-molecular-modeling-approach
#35
JOURNAL ARTICLE
Shuvasish Choudhury, Debojyoti Moulick, Anupom Borah, Purbajyoti Saikia, Muhammed Khairujjaman Mazumder
Severe Acute Respiratory Syndrome coronavirus (SARS-CoV), Middle East Respiratory Syndrome coronavirus (MERS-CoV) and the novel SARS-CoV-2 evade the host innate immunity, and subsequently the adaptive immune response, employing one protease called Papain-like protease (PLpro). The PLpro and the 3CL main protease are responsible for the cleavage of the polyproteins encoded by the + sense RNA genome of the virus to produce several non-structured proteins (NSPs). However, the PLpro also performs deubiquitination and deISGylation of host proteins and signaling molecules, and thus antagonize the host innate immune response, since ubiquitination and ISGylation are critical processes which invoke host's antiviral immune responses...
2021: In Silico Pharmacology
https://read.qxmd.com/read/33813274/targeted-design-of-drug-binding-sites-in-the-main-protease-of-sars-cov-2-reveals-potential-signatures-of-adaptation
#36
JOURNAL ARTICLE
Aditya K Padhi, Timir Tripathi
Several existing drugs are currently being tested worldwide to treat COVID-19 patients. Recent data indicate that SARS-CoV-2 is rapidly evolving into more transmissible variants. It is therefore highly possible that SARS-CoV-2 can accumulate adaptive mutations modulating drug susceptibility and hampering viral antigenicity. Thus, it is vital to predict potential non-synonymous mutation sites and predict the evolution of protein structural modifications leading to drug tolerance. As two FDA-approved anti-hepatitis C virus (HCV) drugs, boceprevir, and telaprevir, have been shown to effectively inhibit SARS-CoV-2 by targeting the main protease (Mpro ), here we used a high-throughput interface-based protein design strategy to identify mutational hotspots and potential signatures of adaptation in these drug binding sites of Mpro ...
March 26, 2021: Biochemical and Biophysical Research Communications
https://read.qxmd.com/read/33755450/direct-observation-of-protonation-state-modulation-in-sars-cov-2-main-protease-upon-inhibitor-binding-with-neutron-crystallography
#37
JOURNAL ARTICLE
Daniel W Kneller, Gwyndalyn Phillips, Kevin L Weiss, Qiu Zhang, Leighton Coates, Andrey Kovalevsky
The main protease (3CL Mpro ) from severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus that causes COVID-19, is an essential enzyme for viral replication with no human counterpart, making it an attractive drug target. To date, no small-molecule clinical drugs are available that specifically inhibit SARS-CoV-2 Mpro . To aid rational drug design, we determined a neutron structure of Mpro in complex with the α-ketoamide inhibitor telaprevir at near-physiological (22 °C) temperature. We directly observed protonation states in the inhibitor complex and compared them with those in the ligand-free Mpro , revealing modulation of the active-site protonation states upon telaprevir binding...
March 23, 2021: Journal of Medicinal Chemistry
https://read.qxmd.com/read/33750880/high-s100a2-expression-in-keratinocytes-in-patients-with-drug-eruption
#38
JOURNAL ARTICLE
Manabu Yoshioka, Yu Sawada, Natsuko Saito-Sasaki, Haruna Yoshioka, Kayo Hama, Daisuke Omoto, Shun Ohmori, Etsuko Okada, Motonobu Nakamura
Telaprevir used as a protease inhibitor against hepatitis C virus is frequently associated with cutaneous adverse reactions. To explore a histological biomarker of cutaneous adverse events induced by telaprevir, we systematically searched for genes that were dysregulated by telaprevir in normal human epidermal keratinocytes (NHEKs). Microarray analysis and real-time polymerase chain reaction (PCR) revealed the significant increase in the expression of S100 calcium-binding protein A2 (S100A2) gene following treatment of NHEKs with telaprevir...
March 9, 2021: Scientific Reports
https://read.qxmd.com/read/33602867/sars-cov-2-m-pro-inhibitors-with-antiviral-activity-in-a-transgenic-mouse-model
#39
JOURNAL ARTICLE
Jingxin Qiao, Yue-Shan Li, Rui Zeng, Feng-Liang Liu, Rong-Hua Luo, Chong Huang, Yi-Fei Wang, Jie Zhang, Baoxue Quan, Chenjian Shen, Xin Mao, Xinlei Liu, Weining Sun, Wei Yang, Xincheng Ni, Kai Wang, Ling Xu, Zi-Lei Duan, Qing-Cui Zou, Hai-Lin Zhang, Wang Qu, Yang-Hao-Peng Long, Ming-Hua Li, Rui-Cheng Yang, Xiaolong Liu, Jing You, Yangli Zhou, Rui Yao, Wen-Pei Li, Jing-Ming Liu, Pei Chen, Yang Liu, Gui-Feng Lin, Xin Yang, Jun Zou, Linli Li, Yiguo Hu, Guang-Wen Lu, Wei-Min Li, Yu-Quan Wei, Yong-Tang Zheng, Jian Lei, Shengyong Yang
The COVID-19 pandemic caused by the SARS-CoV-2 virus continually poses serious threats to global public health. The main protease (Mpro ) of SARS-CoV-2 plays a central role in viral replication. We designed and synthesized 32 new bicycloproline-containing Mpro inhibitors derived from either Boceprevir or Telaprevir, both of which are approved antivirals. All compounds inhibited SARS-CoV-2 Mpro activity in vitro with IC50 values ranging from 7.6 to 748.5 nM. The co-crystal structure of Mpro in complex with MI-23, one of the most potent compounds, revealed its interaction mode...
February 18, 2021: Science
https://read.qxmd.com/read/33577593/direct-antiviral-agents-for-hepatitis-c-and-drug-interaction-risk-a-retrospective-cohort-study-with-real-and-simulated-data-on-medication-interaction-prevalence-of-comorbidities-and-comedications
#40
JOURNAL ARTICLE
Raquel Boff da Costa, Marisa Boff Costa, Larisse Longo, Daniela Elisa Miotto, Gustavo Hirata Dellavia, Matheus Trucollo Michalczuk, Mario Reis Álvares-da-Silva
INTRODUCTION AND AIM: Comorbidities and comedication are common in patients with hepatitis C, which could result in a risk of drug-drug interaction. The objective of this study was to evaluate the prevalence of comorbidities, comedication and drug-drug interactions involving direct-acting antivirals in this population. METHODS: Comorbidities and comedications were evaluated in a retrospective cohort of hepatitis C patients. Drug-drug interactions were estimated in real life and with simulated data on comedications following drug regimens: telaprevir; elbasvir/grazoprevir, ombitasvir/paritaprevir/r/ritonavir (2D regimen), and sofosbuvir/simeprevir, sofosbuvir/daclatasvir, sofosbuvir/ledipasvir; 2D/dasabuvir (3D regimen); glecaprevir/pibrentasvir and sofosbuvir/velpatasvir/voxilaprevir...
2021: PloS One
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