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https://www.readbyqxmd.com/read/28101438/development-and-characterization-of-est-ssr-markers-for-artocarpus-hypargyreus-moraceae
#1
Haijun Liu, Weizheng Tan, Hongbin Sun, Yu Liu, Kaikai Meng, Wenbo Liao
PREMISE OF THE STUDY: Polymorphic microsatellite markers were developed for Artocarpus hypargyreus (Moraceae), a threatened species endemic to China, to investigate the genetic diversity and structure of the species. METHODS AND RESULTS: Based on the transcriptome data of A. hypargyreus, 63 primer pairs were preliminarily designed and tested, of which 34 were successfully amplified and 10 displayed clear polymorphisms across the 67 individuals from four populations of A...
December 2016: Applications in Plant Sciences
https://www.readbyqxmd.com/read/28100189/an-snp-based-saturated-genetic-map-and-qtl-analysis-of-fruit-related-traits-in-zucchini-using-genotyping-by-sequencing
#2
Javier Montero-Pau, José Blanca, Cristina Esteras, Eva Ma Martínez-Pérez, Pedro Gómez, Antonio J Monforte, Joaquín Cañizares, Belén Picó
BACKGROUND: Cucurbita pepo is a cucurbit with growing economic importance worldwide. Zucchini morphotype is the most important within this highly variable species. Recently, transcriptome and Simple Sequence Repeat (SSR)- and Single Nucleotide Polymorphism (SNP)-based medium density maps have been reported, however further genomic tools are needed for efficient molecular breeding in the species. Our objective is to combine currently available complete transcriptomes and the Zucchini genome sequence with high throughput genotyping methods, mapping population development and extensive phenotyping to facilitate the advance of genomic research in this species...
January 18, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28097170/microsatellite-ssr-amplification-by-pcr-usually-led-to-polymorphic-bands-evidence-which-shows-replication-slippage-occurs-in-extend-or-nascent-dna-strands
#3
Abasalt Hosseinzadeh-Colagar, Mohammad Javad Haghighatnia, Zahra Amiri, Maryam Mohadjerani, Majid Tafrihi
Microsatellites or simple sequence repeats (SSRs) are very effective molecular markers in population genetics, genome mapping, taxonomic study and other large-scale studies. Variation in number of tandem repeats within microsatellite refers to simple sequence length polymorphism (SSLP); but there are a few studies that are showed SSRs replication slippage may be occurred during in vitro amplification which are produced 'stutter products' differing in length from the main products. The purpose of this study is introducing a reliable method to realize SSRs replication slippage...
September 2016: Molecular Biology Research Communications
https://www.readbyqxmd.com/read/28095549/treatment-of-facial-photodamage-with-mass-market-topical-products-vs-non-ablative-fractional-laser
#4
Hilary Reich, Irmina Wallander, Lacie Schulte, Molly Goodier, Brian Zelickson
METHODS: In this split-face, evaluator-blinded study, 18 subjects were randomly assigned to receive either the SSR or NFL treatments on each side of the face. For the SSR facial sides subjects followed two morning-evening regimens. On the NFL sides subjects were treated 3 times with the 1927-nm laser at 4-week intervals. Three physician evaluators were asked to rate hyperpigmentation, global photoaging, and ne lines and wrinkles for each side of the face at baseline and at 3 months using a 5-point scale...
November 1, 2016: Journal of Drugs in Dermatology: JDD
https://www.readbyqxmd.com/read/28094539/genetic-diversity-and-population-structure-of-castor-ricinus-communis-l-germplasm-within-the-us-collection-assessed-with-est-ssr-markers
#5
M L Wang, M Dzievit, Z Chen, J B Morris, J E Norris, N A Barkley, B Tonnis, G A Pederson, J Yu
Castor is an important oilseed crop and although its oil is inedible, it has multiple industrial and pharmaceutical applications. The entire US castor germplasm collection was previously screened for oil content and fatty acid composition, but its genetic diversity and population structure has not been determined. Based on the screening results of oil content, fatty acid composition, and country origins, 574 accessions were selected and genotyped with 22 polymorphic EST-SSR markers. The results from cluster analysis, population structure, and principal component analysis were consistent, and partitioned accessions into four subpopulations...
October 14, 2016: Genome Génome / Conseil National de Recherches Canada
https://www.readbyqxmd.com/read/28090411/development-of-ssr-markers-by-454-sequencing-in-the-endemic-species-gentianella-praecox-subsp-bohemica-gentianaceae
#6
Mária Šurinová, Jiří Brabec, Zuzana Münzbergová
PREMISE OF THE STUDY: Polymorphic microsatellite loci were developed and used to genotype individuals of Gentianella praecox subsp. bohemica (Gentianaceae), a highly protected taxon in Europe, to study the genetic structure of the remaining populations. METHODS AND RESULTS: Thirty-eight primer pairs were successfully amplified; of these, 12 polymorphic microsatellite loci were developed using a 454 sequencing approach and used to genotype 180 individuals of G. praecox subsp...
January 2017: Applications in Plant Sciences
https://www.readbyqxmd.com/read/28086783/de-novo-transcriptome-analysis-of-rose-scented-geranium-provides-insights-into-the-metabolic-specificity-of-terpene-and-tartaric-acid-biosynthesis
#7
Lokesh K Narnoliya, Girija Kaushal, Sudhir P Singh, Rajender S Sangwan
BACKGROUND: Rose-scented geranium (Pelargonium sp.) is a perennial herb that produces a high value essential oil of fragrant significance due to the characteristic compositional blend of rose-oxide and acyclic monoterpenoids in foliage. Recently, the plant has also been shown to produce tartaric acid in leaf tissues. Rose-scented geranium represents top-tier cash crop in terms of economic returns and significance of the plant and plant products. However, there has hardly been any study on its metabolism and functional genomics, nor any genomic expression dataset resource is available in public domain...
January 13, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28081566/a-novel-phytophthora-sojae-resistance-rps12-gene-mapped-to-a-genomic-region-that-contains-several-rps-genes
#8
Dipak K Sahoo, Nilwala S Abeysekara, Silvia R Cianzio, Alison E Robertson, Madan K Bhattacharyya
Phytophthora sojae Kaufmann and Gerdemann, which causes Phytophthora root rot, is a widespread pathogen that limits soybean production worldwide. Development of Phytophthora resistant cultivars carrying Phytophthora resistance Rps genes is a cost-effective approach in controlling this disease. For this mapping study of a novel Rps gene, 290 recombinant inbred lines (RILs) (F7 families) were developed by crossing the P. sojae resistant cultivar PI399036 with the P. sojae susceptible AR2 line, and were phenotyped for responses to a mixture of three P...
2017: PloS One
https://www.readbyqxmd.com/read/28081530/antipathy-of-trichoderma-against-sclerotium-rolfsii-sacc-evaluation-of-cell-wall-degrading-enzymatic-activities-and-molecular-diversity-analysis-of-antagonists
#9
Darshna G Hirpara, Harsukh P Gajera, Hitesh Z Hirpara, Balubhai A Golakiya
The fungus Trichoderma is a teleomorph of the Hypocrea genus and associated with biological control of plant diseases. The microscopic, biochemical, and molecular characterization of Trichoderma was carried out and evaluated for in vitro antagonistic activity against the fungal pathogen Sclerotium rolfsii causing stem rot disease in groundnut. In total, 11 isolates of Trichoderma were examined for antagonism at 6 and 12 days after inoculation (DAI). Out of 11, T. virens NBAII Tvs12 evidenced the highest (87...
January 13, 2017: Journal of Molecular Microbiology and Biotechnology
https://www.readbyqxmd.com/read/28081280/evaluation-on-the-germplasm-of-maize-zea-mays-l-landraces-from-southwest-china
#10
F B Chen, Q L Yao, H F Liu, P Fang
Because of their local adaptation and economic factors that limit the adoption of commercial hybrids, farmer-saved maize landraces are still grown over a considerable area concentrated in southwest China. To evaluate the potential of using maize landraces, the germplasm characteristics of 96 landraces from southwest China were evaluated at phenotypic, cellular, and molecular levels. The existence of high phenotypic variation and elite germplasm tolerant to low-N, low-P, as well as drought stress was observed...
December 23, 2016: Genetics and Molecular Research: GMR
https://www.readbyqxmd.com/read/28077077/estimating-genomic-diversity-and-population-differentiation-an-empirical-comparison-of-microsatellite-and-snp-variation-in-arabidopsis-halleri
#11
Martin C Fischer, Christian Rellstab, Marianne Leuzinger, Marie Roumet, Felix Gugerli, Kentaro K Shimizu, Rolf Holderegger, Alex Widmer
BACKGROUND: Microsatellite markers are widely used for estimating genetic diversity within and differentiation among populations. However, it has rarely been tested whether such estimates are useful proxies for genome-wide patterns of variation and differentiation. Here, we compared microsatellite variation with genome-wide single nucleotide polymorphisms (SNPs) to assess and quantify potential marker-specific biases and derive recommendations for future studies. Overall, we genotyped 180 Arabidopsis halleri individuals from nine populations using 20 microsatellite markers...
January 11, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28069590/identification-of-ssr-markers-closely-linked-to-the-yellow-seed-coat-color-gene-in-heading-chinese-cabbage-brassica-rapa-l-ssp-pekinensis
#12
Yanjing Ren, Junqing Wu, Jing Zhao, Lingyu Hao, Lugang Zhang
Research on the yellow-seeded variety of heading Chinese cabbage will aid in broadening its germplasm resources and lay a foundation for AA genome research in Brassica crops. Here, an F2 segregating population of 1,575 individuals was constructed from two inbred lines (brown-seeded '92S105' and yellow-seeded '91-125'). This population was used to identify the linkage molecular markers of the yellow seed coat trait using simple sequence repeat (SSR) techniques combined with a bulk segregant analysis (BSA). Of the 144 SSR primer pairs on the A01- A10 chromosomes from the Brassica database (http://brassicadb...
January 9, 2017: Biology Open
https://www.readbyqxmd.com/read/28045132/a-second-generation-snp-and-ssr-integrated-linkage-map-and-qtl-mapping-for-the-chinese-mitten-crab-eriocheir-sinensis
#13
Gao-Feng Qiu, Liang-Wei Xiong, Zhi-Ke Han, Zhi-Qiang Liu, Jian-Bin Feng, Xu-Gan Wu, Yin-Long Yan, Hong Shen, Long Huang, Li Chen
The Chinese mitten crab Eriocheir sinensis is the most economically important cultivated crab species in China, and its genome has a high number of chromosomes (2n = 146). To obtain sufficient markers for construction of a dense genetic map for this species, we employed the recently developed specific-locus amplified fragment sequencing (SLAF-seq) method for large-scale SNPs screening and genotyping in a F1 full-sib family of 149 individuals. SLAF-seq generated 127,677 polymorphic SNP markers, of which 20,803 valid markers were assigned into five segregation types and were used together with previous SSR markers for linkage map construction...
January 3, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28040914/note-improving-distributed-strain-sensing-sensitivity-in-ofdr-by-reduced-cladding-single-mode-fiber
#14
Zhenyang Ding, Di Yang, Yang Du, Yonghan Zhou, Zhexi Xu, Kun Liu, Junfeng Jiang, Tiegen Liu
We present a method to improve distributed strain sensing sensitivity by a reduced-cladding single mode fiber (RC SMF) using a Rayleigh backscattering spectra shift in optical frequency domain reflectometry. Comparing with a standard SMF with 250 μm diameter, a commercial low attenuation RC SMF with 165 μm diameter is shown to enhance the strain sensing sensitivity by about four-fold. Using this property, the system using the RC SMF can achieve smaller minimal measurable strain (MMS) in the same sensing spatial resolution (SSR) or smaller SSR in the same MMS than using the standard SMF...
December 2016: Review of Scientific Instruments
https://www.readbyqxmd.com/read/28031244/fine-mapping-of-ur-3-a-historically-important-rust-resistance-locus-in-common-bean
#15
Oscar P Hurtado-Gonzales, Giseli Valentini, Thiago A S Gilio, Alexandre M Martins, Qijian Song, Marcial A Pastor-Corrales
Bean rust, caused by Uromyces appendiculatus, is a devastating disease of common bean (Phaseolus vulgaris) in the Americas and Africa. The historically important Ur-3 gene confers resistance to many races of the highly variable bean rust pathogen that overcome other rust resistance genes. Existing molecular markers tagging Ur-3 for use in marker assisted selection produce false results. We describe here the fine mapping of the Ur-3 locus for the development of highly accurate markers linked to Ur-3 An F2 population from the cross Pinto 114 (susceptible) × Aurora (resistant with Ur-3) was evaluated for its reaction to four different races of U...
December 27, 2016: G3: Genes—Genomes—Genetics
https://www.readbyqxmd.com/read/28030580/historic-late-blight-outbreaks-caused-by-a-widespread-dominant-lineage-of-phytophthora-infestans-mont-de-bary
#16
Amanda C Saville, Michael D Martin, Jean B Ristaino
Phytophthora infestans (Mont.) de Bary, the causal agent of potato late blight, was responsible for the Irish potato famine of the 1840s. Initial disease outbreaks occurred in the US in 1843, two years prior to European outbreaks. We examined the evolutionary relationships and source of the 19th-century outbreaks using herbarium specimens of P. infestans from historic (1846-1970) and more recent isolates (1992-2014) of the pathogen. The same unique SSR multilocus genotype, named here as FAM-1, caused widespread outbreaks in both US and Europe...
2016: PloS One
https://www.readbyqxmd.com/read/28026122/the-electrochemical-response-of-single-crystalline-copper-nanowires-to-atmospheric-air-and-aqueous-solution
#17
Bowei Zhang, Bensong Chen, Junsheng Wu, Shiji Hao, Guang Yang, Xun Cao, Lin Jing, Minmin Zhu, Siu Hon Tsang, Edwin Hang Tong Teo, Yizhong Huang
In this paper, single crystalline copper nanowires (CuNWs) have been electrochemically grown through anodic aluminum oxide template. The environmental stability of the as-obtained CuNWs in both 40% relative humidity (RH) atmosphere and 0.1 m NaOH aqueous solution has been subsequently studied. In 40% RH atmosphere, a uniform compact Cu2 O layer is formed as a function of exposure time following the logarithmic law and epitaxially covers the CuNW surfaces. It is also found that the oxide layers on CuNWs are sequentially grown when subjected to the cyclic voltammetry measurement in 0...
December 27, 2016: Small
https://www.readbyqxmd.com/read/28013418/left-ventricular-reverse-remodeling-in-dilated-cardiomyopathy-maintained-subclinical-myocardial-systolic-and-diastolic-dysfunction
#18
Sandra Amorim, João Rodrigues, Manuel Campelo, Brenda Moura, Elisabete Martins, Filipe Macedo, J Silva-Cardoso, M Júlia Maciel
In idiopathic dilated cardiomyopathy (DCM), myocardial deformational parameters and their relationships remain incompletely characterized. We measured those parameters in patients with DCM, during left ventricular reverse remodeling (LVRR). Prospective study of 50 DCM patients (in sinus rhythm), with left ventricular ejection fraction (EF) <40%. LVRR was defined as an increase of ten units of EF and decrease of diastolic left ventricular diameter (LVDD) in the absence of resynchronization therapy. Performed morphological analysis, myocardial performance quantification (LV and RV Tei indexes) and LV averaged peak systolic longitudinal strain (SSR long) and circumferential strain (SSR circ)...
December 24, 2016: International Journal of Cardiovascular Imaging
https://www.readbyqxmd.com/read/28012225/drivers-of-genetic-differentiation-in-a-generalist-insect-pollinated-herb-across-spatial-scales
#19
A J Muñoz-Pajares, C García, M Abdelaziz, J Bosch, F Perfectti, J M Gómez
The isolation by distance model (IBD) predicts that genetic differentiation among populations increases with geographic distance. Yet, empirical studies show that a variety of ecological, topographic, and historical factors may override the effect of geographic distance on genetic variation. This may particularly apply to species with narrow but highly heterogeneous distribution ranges, such as those occurring along elevational gradients. Using nine SSR markers, we study the genetic differentiation of the montane pollination-generalist herb, Erysimum mediohispanicum...
December 24, 2016: Molecular Ecology
https://www.readbyqxmd.com/read/28004280/genetic-structure-of-hepatica-nobilis-var-japonica-focusing-on-within-population-flower-color-polymorphism
#20
Shinichiro Kameoka, Hitoshi Sakio, Harue Abe, Hajime Ikeda, Hiroaki Setoguchi
How phenotypic or genetic diversity is maintained in a natural habitat is a fundamental question in evolutionary biology. Flower color polymorphism in plants is a common polymorphism. Hepatica nobilis var. japonica on the Sea of Japan (SJ) side of the Japanese mainland exhibits within population flower color polymorphism (e.g., white, pink, and purple), while only white flowers are observed on the Pacific Ocean (PO) side. To determine the relationships between flower color polymorphism, within and among populations, and the genetic structure of H...
December 21, 2016: Journal of Plant Research
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