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Brassica rapa

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https://www.readbyqxmd.com/read/28210266/a-phylogenetic-analysis-of-chloroplast-genomes-elucidates-the-relationships-of-the-six-economically-important-brassica-species-comprising-the-triangle-of-u
#1
Peirong Li, Shujiang Zhang, Fei Li, Shifan Zhang, Hui Zhang, Xiaowu Wang, Rifei Sun, Guusje Bonnema, Theo J A Borm
The Brassica genus comprises many economically important worldwide cultivated crops. The well-established model of the Brassica genus, U's triangle, consists of three basic diploid plant species (Brassica rapa, Brassica oleracea, and Brassica nigra) and three amphidiploid species (Brassica napus, Brassica juncea, and Brassica carinata) that arose through interspecific hybridizations. Despite being extensively studied because of its commercial relevance, several aspects of the origin of the Brassica species and the relationships within and among these six species still remain open questions...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28185156/imi-resistance-associated-to-crop-weed-hybridization-in-a-natural-brassica-rapa-population-characterization-and-fate
#2
M S Ureta, F Torres Carbonell, C Pandolfo, A D Presotto, M A Cantamutto, M Poverene
Wild turnip (Brassica rapa) is a common weed and a close relative to oilseed rape (Brassica napus). The Clearfield® production system is a highly adopted tool which provides an alternative solution for weed management, but its efficiency is threatened by gene transfer from crop to weed relatives. Crop-weed hybrids with herbicide resistance were found in the progeny of a B. rapa population gathered from a weedy stand on the borders of an oilseed rape (B. napus) imidazolinone (IMI)-resistant crop. Interspecific hybrids were confirmed by morphological traits in the greenhouse and experimental field, survival after imazethapyr applications, DNA content through flow cytometry, and pollen viability...
March 2017: Environmental Monitoring and Assessment
https://www.readbyqxmd.com/read/28177832/natural-variation-in-i-circadian-clock-associated-1-i-is-associated-with-flowering-time-in-i-brassica-rapa-i
#3
Hankuil Yi, Xiaonan Li, Seong Ho Lee, Ill-Sup Nou, Yong Pyo Lim, Yoonkang Hur
Flowering time is a very important agronomic trait and the development of molecular markers associated with this trait can facilitate crop breeding. <i>CIRCADIAN CLOCK ASSOCIATED 1</i> (<i>CCA1</i>), a core oscillator component of circadian rhythms that affect metabolic pathways in plants, has been implicated in flowering time control in <i>Brassica</i> species. <i>CCA1</i> gene sequences from three <i>Brassica rapa</i> inbred lines, showing either early flowering or late flowering phenotypes, were analyzed and a high level of ets were designed and tested using various inbred lines of <i>B...
December 22, 2016: Genome Génome / Conseil National de Recherches Canada
https://www.readbyqxmd.com/read/28169083/evaluation-of-biochar-amended-biosolids-co-composting-to-improve-the-nutrient-transformation-and-its-correlation-as-a-function-for-the-production-of-nutrient-rich-compost
#4
Mukesh Kumar Awasthi, Quan Wang, Hongyu Chen, Meijing Wang, Xiuna Ren, Junchao Zhao, Jiao Li, Di Guo, Dong-Sheng Li, Sanjeev Kumar Awasthi, Xining Sun, Zengqiang Zhang
The influence of biochar amended dewatered fresh sewage sludge (DFSS)-wheat straw co-composting on nutrients transformation and end products quality was investigated. This is the first study to examine the biochar applied compost quality with different kgha(-1) TKN on Brassica rapa L. growth. Seven mixtures were composted over 8-weeks period in 130-L reactor using the same DFSS with different concentration of biochar (2%, 4%, 6%, 8%, 12% and 18% on dry weight basis) and without additive added treatment served as control...
January 26, 2017: Bioresource Technology
https://www.readbyqxmd.com/read/28158841/cold-acclimation-alters-dna-methylation-patterns-and-confers-tolerance-to-heat-and-increases-growth-rate-in-brassica-rapa
#5
Tongkun Liu, Ying Li, Weike Duan, Feiyi Huang, Xilin Hou
No abstract text is available yet for this article.
February 1, 2017: Journal of Experimental Botany
https://www.readbyqxmd.com/read/28154137/biosynthesis-of-cabbage-phytoalexins-from-indole-glucosinolate
#6
Andrew P Klein, Elizabeth S Sattely
Brassica crop species are prolific producers of indole-sulfur phytoalexins that are thought to have an important role in plant disease resistance. These molecules are conspicuously absent in the model plant Arabidopsis thaliana, and little is known about the enzymatic steps that assemble the key precursor brassinin. Here, we report the minimum set of biosynthetic genes required to generate cruciferous phytoalexins starting from the well-studied glucosinolate pathway. In vitro biochemical characterization revealed an additional role for the previously described carbon-sulfur lyase SUR1 in processing cysteine-isothiocyanate conjugates, as well as the S-methyltransferase DTCMT that methylates the resulting dithiocarbamate, together completing a pathway to brassinin...
February 2, 2017: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/28145061/chemical-variability-and-biological-activities-of-brassica-rapa-var-rapifera-parts-essential-oils-depending-on-geographic-variation-and-extraction-technique
#7
Boualem Saka, Abderrahmane Djouahri, Zineb Djerrad, Terfi Souhila, Sihem Aberrane, Nasserdine Sabaou, Aoumeur Baaliouamer, Lynda Boudarene
In the present work, the Brassica rapa var. rapifera parts essential oils and their antioxidant and antimicrobial activities were investigated for the first time depending on geographic origin and extraction technique. GC and GC-MS analyses showed several constituents, including alcohols, aldehydes, esters, ketones, norisoprenoids, terpenic, nitrogen and sulphur compounds, totalizing 38 and 41 compounds in leaves and root essential oils, respectively. Nitrogen compounds were the main volatiles in leaves essential oils and sulphur compounds were the main volatiles in root essential oils...
February 1, 2017: Chemistry & Biodiversity
https://www.readbyqxmd.com/read/28134434/herbivore-induced-plant-volatiles-accurately-predict-history-of-coexistence-diet-breadth-and-feeding-mode-of-herbivores
#8
Holger Danner, Gaylord A Desurmont, Simona M Cristescu, Nicole M van Dam
Herbivore-induced plant volatiles (HIPVs) serve as specific cues to higher trophic levels. Novel, exotic herbivores entering native foodwebs may disrupt the infochemical network as a result of changes in HIPV profiles. Here, we analysed HIPV blends of native Brassica rapa plants infested with one of 10 herbivore species with different coexistence histories, diet breadths and feeding modes. Partial least squares (PLS) models were fitted to assess whether HIPV blends emitted by Dutch B. rapa differ between native and exotic herbivores, between specialists and generalists, and between piercing-sucking and chewing herbivores...
January 30, 2017: New Phytologist
https://www.readbyqxmd.com/read/28131821/the-fate-of-retrotransposed-processed-genes-in-arabidopsis-thaliana
#9
Basma T M Abdelkarim, Vincent Maranda, Guy Drouin
Processed genes are functional genes that have arisen as a result of the retrotransposition of mRNA molecules. We found 6 genes that generated processed genes in the common ancestor of five Brassicaceae species (Arabidopsis thaliana, Arabidopsis lyrata, Capsella rubella, Brassica rapa and Thellungiella parvula). These processed genes have therefore been kept for at least 30millionyears. Analyses of the Ka/Ks ratio of these genes, and of those having given rise to them, show that they evolve relatively slowly and suggest that the processed genes maintained the same function as that of their parental gene...
January 25, 2017: Gene
https://www.readbyqxmd.com/read/28131477/advances-on-the-determination-of-thresholds-of-cu-phytotoxicity-in-field-contaminated-soils-in-central-chile
#10
Pedro Mondaca, Joanie Catrin, José Verdejo, Sébastien Sauvé, Alexander Neaman
To better determine phytotoxicity thresholds for metals in the soil, studies should use actual field-contaminated soil samples rather than metal-spiked soil preparations. However, there are surprisingly few such data available for Cu phytotoxicity in field-contaminated soils. Moreover, these studies differ from each other with regards to soil characteristics and experimental setups. This study aimed at more accurately estimating Cu phytotoxicity thresholds using field-collected agricultural soils (Entisols) from areas exposed to contamination from Cu mining...
January 25, 2017: Environmental Pollution
https://www.readbyqxmd.com/read/28122509/genome-wide-expression-profiling-of-aquaporin-genes-confer-responses-to-abiotic-and-biotic-stresses-in-brassica-rapa
#11
Md Abdul Kayum, Jong-In Park, Ujjal Kumar Nath, Manosh Kumar Biswas, Hoy-Taek Kim, Ill-Sup Nou
BACKGROUND: Plants contain a range of aquaporin (AQP) proteins, which act as transporter of water and nutrient molecules through living membranes. AQPs also participate in water uptake through the roots and contribute to water homeostasis in leaves. RESULTS: In this study, we identified 59 AQP genes in the B. rapa database and Br135K microarray dataset. Phylogenetic analysis revealed four distinct subfamilies of AQP genes: plasma membrane intrinsic proteins (PIPs), tonoplast intrinsic proteins (TIPs), NOD26-like intrinsic proteins (NIPs) and small basic intrinsic proteins (SIPs)...
January 25, 2017: BMC Plant Biology
https://www.readbyqxmd.com/read/28097399/segregation-for-fertility-and-meiotic-stability-in-novel-brassica-allohexaploids
#12
Margaret W Mwathi, Mehak Gupta, Chaya Atri, Surinder S Banga, Jacqueline Batley, Annaliese S Mason
Allohexaploid Brassica populations reveal ongoing segregation for fertility, while genotype influences fertility and meiotic stability. Creation of a new Brassica allohexaploid species is of interest for the development of a crop type with increased heterosis and adaptability. At present, no naturally occurring, meiotically stable Brassica allohexaploid exists, with little data available on chromosome behaviour and meiotic control in allohexaploid germplasm. In this study, 100 plants from the cross B. carinata × B...
January 17, 2017: TAG. Theoretical and Applied Genetics. Theoretische und Angewandte Genetik
https://www.readbyqxmd.com/read/28094809/genome-wide-identification-evolution-and-expression-analysis-of-ring-finger-protein-genes-in-brassica-rapa
#13
Intikhab Alam, Yan-Qing Yang, Yong Wang, Mei-Lan Zhu, Heng-Bo Wang, Boulos Chalhoub, Yun-Hai Lu
More and more RING finger genes were found to be implicated in various important biological processes. In the present study, a total of 731 RING domains in 715 predicted proteins were identified in Brassica rapa genome (AA, 2n = 20), which were further divided into eight types: RING-H2 (371), RING-HCa (215), RING-HCb (47), RING-v (44), RING-C2 (38), RING-D (10), RING-S/T (5) and RING-G (1). The 715 RING finger proteins were further classified into 51 groups according to the presence of additional domains...
January 17, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28094342/optimizing-isothiocyanate-formation-during-enzymatic-glucosinolate-breakdown-by-adjusting-ph-value-temperature-and-dilution-in-brassica-vegetables-and-arabidopsis-thaliana
#14
Franziska S Hanschen, Rebecca Klopsch, Teresa Oliviero, Monika Schreiner, Ruud Verkerk, Matthijs Dekker
Consumption of glucosinolate-rich Brassicales vegetables is associated with a decreased risk of cancer with enzymatic hydrolysis of glucosinolates playing a key role. However, formation of health-promoting isothiocyanates is inhibited by the epithiospecifier protein in favour of nitriles and epithionitriles. Domestic processing conditions, such as changes in pH value, temperature or dilution, might also affect isothiocyanate formation. Therefore, the influences of these three factors were evaluated in accessions of Brassica rapa, Brassica oleracea, and Arabidopsis thaliana...
January 17, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28081489/protective-effect-of-chitosan-on-photosynthesis-and-antioxidative-defense-system-in-edible-rape-brassica-rapa-l-in-the-presence-of-cadmium
#15
Haiying Zong, Song Liu, Ronge Xing, Xiaolin Chen, Pengcheng Li
Chitosan (CTS) induces plant tolerance against several abiotic stresses, including salinity and drought exposure. However, the role of CTS in cadmium (Cd)-induced stress amelioration is largely unknown. In the present study, a hydroponic pot experiment was conducted to study the roles of CTS with different molecular weight (Mw) (10kDa,5kDa and 1kDa) in alleviating Cd toxicity in edible rape (Brassica rapa L .). The results showed that Cd stress significantly decreased plant growth, leaf chlorophyll contents and increased the malondialdehyde (MDA) level in rape leaves...
April 2017: Ecotoxicology and Environmental Safety
https://www.readbyqxmd.com/read/28069590/identification-of-ssr-markers-closely-linked-to-the-yellow-seed-coat-color-gene-in-heading-chinese-cabbage-brassica-rapa-l-ssp-pekinensis
#16
Yanjing Ren, Junqing Wu, Jing Zhao, Lingyu Hao, Lugang Zhang
Research on the yellow-seeded variety of heading Chinese cabbage will aid in broadening its germplasm resources and lay a foundation for AA genome research in Brassica crops. Here, an F2 segregating population of 1575 individuals was constructed from two inbred lines (brown-seeded '92S105' and yellow-seeded '91-125'). This population was used to identify the linkage molecular markers of the yellow seed coat trait using simple sequence repeat (SSR) techniques combined with a bulk segregant analysis (BSA). Of the 144 SSR primer pairs on the A01-A10 chromosomes from the Brassica database (http://brassicadb...
February 15, 2017: Biology Open
https://www.readbyqxmd.com/read/28054984/detection-of-ribosomal-dna-sequence-polymorphisms-in-the-protist-plasmodiophora-brassicae-for-the-identification-of-geographical-isolates
#17
Rawnak Laila, Arif Hasan Khan Robin, Kiwoung Yang, Gyung Ja Choi, Jong-In Park, Ill-Sup Nou
Clubroot is a soil-borne disease caused by the protist Plasmodiophora brassicae (P. brassicae). It is one of the most economically important diseases of Brassica rapa and other cruciferous crops as it can cause remarkable yield reductions. Understanding P. brassicae genetics, and developing efficient molecular markers, is essential for effective detection of harmful races of this pathogen. Samples from 11 Korean field populations of P. brassicae (geographic isolates), collected from nine different locations in South Korea, were used in this study...
January 4, 2017: International Journal of Molecular Sciences
https://www.readbyqxmd.com/read/28028464/hairiness-the-missing-link-between-pollinators-and-pollination
#18
Jamie R Stavert, Gustavo Liñán-Cembrano, Jacqueline R Beggs, Brad G Howlett, David E Pattemore, Ignasi Bartomeus
BACKGROUND: Functional traits are the primary biotic component driving organism influence on ecosystem functions; in consequence, traits are widely used in ecological research. However, most animal trait-based studies use easy-to-measure characteristics of species that are at best only weakly associated with functions. Animal-mediated pollination is a key ecosystem function and is likely to be influenced by pollinator traits, but to date no one has identified functional traits that are simple to measure and have good predictive power...
2016: PeerJ
https://www.readbyqxmd.com/read/28018375/genome-wide-identification-localization-and-expression-analysis-of-proanthocyanidin-associated-genes-in-brassica
#19
Xianjun Liu, Ying Lu, Mingli Yan, Donghong Sun, Xuefang Hu, Shuyan Liu, Sheyuan Chen, Chunyun Guan, Zhongsong Liu
Proanthocyanidins (PA) is a type of prominent flavonoid compound deposited in seed coats which controls the pigmentation in all Brassica species. Annotation of Brassica juncea genome survey sequences showed 72 PA genes; however, a functional description of these genes, especially how their interactions regulate seed pigmentation, remains elusive. In the present study, we designed 19 primer pairs to screen a bacterial artificial chromosome (BAC) library of B. juncea. A total of 284 BAC clones were identified and sequenced...
2016: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28013378/the-tandem-repeated-organization-of-nb-lrr-genes-in-the-clubroot-resistant-crb-locus-in-brassica-rapa-l
#20
Katsunori Hatakeyama, Tomohisa Niwa, Takeyuki Kato, Takayoshi Ohara, Tomohiro Kakizaki, Satoru Matsumoto
To facilitate prevention of clubroot disease, a major threat to the successful cultivation of Chinese cabbage (Brassica rapa L.), we bred clubroot-resistant (CR) cultivars by introducing resistance genes from CR turnips via conventional breeding. Among 11 CR loci found in B. rapa, we identified CRb in Chinese cabbage cultivar 'CR Shinki' as a single dominant gene for resistance against Plasmodiophora brassicae pathotype group 3, against which the stacking of Crr1 and Crr2 loci was not effective. However, the precise location and pathotype specificity of CRb have been controversial, because CRa and Rcr1 also map near this locus...
December 24, 2016: Molecular Genetics and Genomics: MGG
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