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https://www.readbyqxmd.com/read/28526964/characterization-of-a-new-isolate-of-pepper-chlorotic-spot-virus-from-yunnan-province-china
#1
Kuanyu Zheng, Tsung-Chi Chen, Shyi-Dong Yeh, Md Siddiqur Rahman, Xiaoxia Su, Kuo Wu, Ting Li, Zhongkai Zhang, Jiahong Dong
A new isolate, 14YV733, of pepper chlorotic spot virus (PCSV) from chili peppers in Yunnan province of China was identified. The typical tospoviral particles of 80-120 nm in diameter were observed by electron microscopy. The virus caused systemic symptoms in several solanaceous plants and the Brassica rapa L. Chinensis group with mechanical inoculation. The sap from infected leaves reacted positively to a rabbit antibody to the N protein of watermelon silver mottle virus (WSMoV) in immunoblotting. The S, M, and L RNAs of PCSV-14YV733 are 3310 nts, 4711 nts, and 8913 nts long, respectively...
May 19, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28504909/ethanol-extract-of-brassica-rapa-ssp-pekinensis-suppresses-tumor-necrosis-factor-%C3%AE-induced-inflammatory-response-in-human-umbilical-vein-endothelial-cells
#2
Hee Kyoung Joo, Sunga Choi, Yu Ran Lee, Eun Ok Lee, Myoung Soo Park, Yong Pyo Lim, Jong-Tae Park, Byeong Hwa Jeon
Brassica rapa L. ssp. pekinensis, commonly known as Chinese cabbage, is a cruciferous vegetable traditionally consumed in east Asia. Although its habitual consumption could account for the low incidence of chronic vascular inflammation, the therapeutic and protective potential of phytochemicals derived from Chinese cabbage has been poorly studied. In this study, we identified the phenolic compounds, kaempferol and quercetin, from the ethanol extract of Chinese cabbage (EtCC). We show for the first time that EtCC contains effective phytochemicals that suppress tumor necrosis factor (TNF)-α-induced inflammatory response in human umbilical vein endothelial cells...
May 2017: Journal of Medicinal Food
https://www.readbyqxmd.com/read/28503182/genome-wide-snp-markers-based-on-slaf-seq-uncover-breeding-traces-in-rapeseed-brassica-napus-l
#3
Qinghong Zhou, Can Zhou, Wei Zheng, Annaliese S Mason, Shuying Fan, Caijun Wu, Donghui Fu, Yingjin Huang
Single Nucleotide Polymorphisms (SNPs) are the most abundant and richest form of genomic polymorphism, and hence make highly favorable markers for genetic map construction and genome-wide association studies. In this study, a total of 300 rapeseed accessions (278 representative of Chinese germplasm, plus 22 outgroup accessions of different origins and ecotypes) were collected and sequenced using Specific-Locus Amplified Fragment Sequencing (SLAF-seq) technology, obtaining 660.25M reads with an average sequencing depth of 6...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28493942/amplifying-recombination-genome-wide-and-reshaping-crossover-landscapes-in-brassicas
#4
Alexandre Pelé, Matthieu Falque, Gwenn Trotoux, Frédérique Eber, Sylvie Nègre, Marie Gilet, Virginie Huteau, Maryse Lodé, Thibaut Jousseaume, Sylvain Dechaumet, Jérôme Morice, Charles Poncet, Olivier Coriton, Olivier C Martin, Mathieu Rousseau-Gueutin, Anne-Marie Chèvre
Meiotic recombination by crossovers (COs) is tightly regulated, limiting its key role in producing genetic diversity. However, while COs are usually restricted in number and not homogenously distributed along chromosomes, we show here how to disrupt these rules in Brassica species by using allotriploid hybrids (AAC, 2n = 3x = 29), resulting from the cross between the allotetraploid rapeseed (B. napus, AACC, 2n = 4x = 38) and one of its diploid progenitors (B. rapa, AA, 2n = 2x = 20). We produced mapping populations from different genotypes of both diploid AA and triploid AAC hybrids, used as female and/or as male...
May 11, 2017: PLoS Genetics
https://www.readbyqxmd.com/read/28487711/in-silico-identification-of-mimicking-molecules-as-defense-inducers-triggering-jasmonic-acid-mediated-immunity-against-alternaria-blight-disease-in-brassica-species
#5
Rajesh K Pathak, Mamta Baunthiyal, Rohit Shukla, Dinesh Pandey, Gohar Taj, Anil Kumar
Alternaria brassicae and Alternaria brassicicola are two major phytopathogenic fungi which cause Alternaria blight, a recalcitrant disease on Brassica crops throughout the world, which is highly destructive and responsible for significant yield losses. Since no resistant source is available against Alternaria blight, therefore, efforts have been made in the present study to identify defense inducer molecules which can induce jasmonic acid (JA) mediated defense against the disease. It is believed that JA triggered defense response will prevent necrotrophic mode of colonization of Alternaria brassicae fungus...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28481284/cultivar-specific-changes-in-primary-and-secondary-metabolites-in-pak-choi-brassica-rapa-chinensis-group-by-methyl-jasmonate
#6
Moo Jung Kim, Yu-Chun Chiu, Na Kyung Kim, Hye Min Park, Choong Hwan Lee, John A Juvik, Kang-Mo Ku
Glucosinolates, their hydrolysis products and primary metabolites were analyzed in five pak choi cultivars to determine the effect of methyl jasmonate (MeJA) on metabolite flux from primary metabolites to glucosinolates and their hydrolysis products. Among detected glucosinolates (total 14 glucosinolates; 9 aliphatic, 4 indole and 1 aromatic glucosinolates), indole glucosinolate concentrations (153-229%) and their hydrolysis products increased with MeJA treatment. Changes in the total isothiocyanates by MeJA were associated with epithiospecifier protein activity estimated as nitrile formation...
May 7, 2017: International Journal of Molecular Sciences
https://www.readbyqxmd.com/read/28470009/transcriptome-analysis-of-orange-head-chinese-cabbage-brassica-rapa-l-ssp-pekinensis-and-molecular-marker-development
#7
Jingjuan Li, Yihui Zhang, Qian Ding, Huayin Li, Lifeng Liu, Fengde Wang, Jianwei Gao
Due to the visual appearance and high carotenoid content, orange inner leaves are a desirable trait for the Chinese cabbage. To understand the molecular mechanism underlying the formation of orange inner leaves, the BrCRTISO (Bra031539) gene, as the Br-or candidate gene, was analyzed among the white and orange varieties, and 7 single nucleotide polymorphisms (SNPs) were identified. However, only one SNP (C(952) to T(952)) altered the amino acid sequence, resulting in a mutation from Leu(318) to Phe(318) in the orange varieties...
2017: International Journal of Genomics
https://www.readbyqxmd.com/read/28450111/molecular-characterization-of-an-atpyl1-like-protein-brpyl1-as-a-putative-aba-receptor-in-brassica-rapa
#8
Yanlin Li, Dandan Wang, Congcong Sun, Xiaochen Hu, Xiaoqian Mu, Jingjiang Hu, Yongqing Yang, Yanfeng Zhang, Chang Gen Xie, Xiaona Zhou
Abscisic acid (ABA)-induced physiological changes are conserved in many land plants and underlie their responses to environmental stress and pathogens. The PYRABACTIN RESISTANCE1/PYR1-LIKE/REGULATORY COMPONENTS OF ABA RECEPTORS (PYLs)-type receptors perceive the ABA signal and initiate signal transduction. Here, we show that the genome of Brassica rapa encodes 24 putative AtPYL-like proteins. The AtPYL-like proteins in Brassica rapa (BrPYLs) can also be classified into 3 subclasses. We found that nearly all BrPYLs displayed high expression in at least one tissue...
April 24, 2017: Biochemical and Biophysical Research Communications
https://www.readbyqxmd.com/read/28437729/evaluation-of-the-effects-of-polymeric-chitosan-tripolyphosphate-and-solid-lipid-nanoparticles-on-germination-of-zea-mays-brassica-rapa-and-pisum-sativum
#9
Daniele Y Nakasato, Anderson E S Pereira, Jhones L Oliveira, Halley C Oliveira, Leonardo F Fraceto
Although the potential toxicity of many metallic and carbon nanoparticles to plants has been reported, few studies have evaluated the phytotoxic effects of polymeric and solid lipid nanoparticles. The present work described the preparation and characterization of chitosan/tripolyphosphate (CS/TPP) nanoparticles and solid lipid nanoparticles (SLN) and evaluated the effects of different concentrations of these nanoparticles on germination of Zea mays, Brassica rapa, and Pisum sativum. CS/TPP nanoparticles presented an average size of 233...
August 2017: Ecotoxicology and Environmental Safety
https://www.readbyqxmd.com/read/28432881/improvement-in-cadmium-tolerance-of-edible-rape-brassica-rapa-l-with-exogenous-application-of-chitooligosaccharide
#10
Haiying Zong, Kecheng Li, Song Liu, Lin Song, Ronge Xing, Xiaolin Chen, Pengcheng Li
Cadmium (Cd) is one of the most toxic heavy metals, which is readily taken up by plant roots and has deleterious effects on crop yield and quality. The study investigated the potential cross-protection roles of chitooligosaccharide (COS) in alleviating Cd toxicity in edible rape (Brassica rapa L.) under greenhouse conditions. The results demonstrated that spraying COS onto the leaves of edible rape could promote the plant growth and leaf chlorophyll contents, decrease the malondialdehyde (MDA) level in leaves as well as the Cd(2+) concentration in shoots and roots of edible rape under Cd stress...
April 7, 2017: Chemosphere
https://www.readbyqxmd.com/read/28424711/genomic-molecular-evolution-and-expression-analysis-of-genes-encoding-putative-classical-agps-lysine-rich-agps-and-ag-peptides-in-brassica-rapa
#11
Tianyu Han, Heng Dong, Jie Cui, Ming Li, Sue Lin, Jiashu Cao, Li Huang
Arabinogalactan proteins (AGPs) belong to a class of Pro/Hyp-rich glycoproteins and are some of the most complex types of macromolecules found in plants. In the economically important plant species, Brassica rapa, only chimeric AGPs have been identified to date. This has significantly limited our understanding of the functional roles of AGPs in this plant. In this study, 64 AGPs were identified in the genome of B. rapa, including 33 classical AGPs, 28 AG peptides and three lys-rich AGPs. Syntenic gene analysis between B...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28418033/a-genome-wide-snp-based-genetic-map-and-qtl-mapping-for-agronomic-traits-in-chinese-cabbage
#12
Li Huang, Yafei Yang, Fang Zhang, Jiashu Cao
The aim of this work was to construct a high-resolution genetic map for the dissection of complex morphological and agronomic traits in Chinese cabbage (Brassica rapa L. syn. B. campestris). Chinese cabbage, an economically important vegetable, is a good model plant for studies on the evolution of morphologic variation. Herein, two high-generation inbred Chinese cabbage lines, 'Huangxiaoza' and 'Bqq094-11', were crossed. Then restriction-site-associated DNA sequencing (RAD-seq) was performed on the parents and 120 F2 individuals...
April 18, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28371014/genomic-inferences-of-domestication-events-are-corroborated-by-written-records-in-brassica-rapa
#13
Xinshuai Qi, Hong An, Aaron P Ragsdale, Tara E Hall, Ryan N Gutenkunst, J Chris Pires, Michael S Barker
Demographic modelling is often used with population genomic data to infer the relationships and ages among populations. However, relatively few analyses are able to validate these inferences with independent data. Here, we leverage written records that describe distinct Brassica rapa crops to corroborate demographic models of domestication. Brassica rapa crops are renowned for their outstanding morphological diversity, but the relationships and order of domestication remain unclear. We generated genomewide SNPs from 126 accessions collected globally using high-throughput transcriptome data...
April 1, 2017: Molecular Ecology
https://www.readbyqxmd.com/read/28369291/parasitoid-diaeretiella-rapae-hymenoptera-braconidae-adjusts-reproductive-strategy-when-competing-for-hosts
#14
Rashmi Kant, Maria A Minor
Parasitoid fitness depends on its ability to manipulate reproductive strategies when in competition. This study investigated the parasitism and sex allocation strategies of the parasitic wasp Diaeretiella rapae McIntosh at a range of host (Brevicoryne brassicae L.) and conspecific densities. The results suggest that D. rapae females adjust their progeny production and progeny sex ratio with changing competition. When foraging alone, female D. rapae parasitize larger number of B. brassicae nymphs when the number of available hosts is increased, but the overall proportion of parasitized hosts decreases with increase in host density...
March 20, 2017: Environmental Entomology
https://www.readbyqxmd.com/read/28367152/genome-wide-identification-evolution-and-expression-analysis-of-the-atp-binding-cassette-transporter-gene-family-in-brassica-rapa
#15
Chao Yan, Weike Duan, Shanwu Lyu, Ying Li, Xilin Hou
ATP-binding cassette (ABC) proteins can act as transporters of different substrates across biological membranes by hydrolyzing ATP. However, little information is available about ABC transporters in Brassica rapa, an important leafy vegetable. In the present study, we carried out genome-wide identification, characterization and molecular evolution analyses of ABC gene family in B. rapa and 9 other plant species. A total of 179 B. rapa ABC genes (BraABCs) were identified. Among them, 173 BraABCs were identified on 10 chromosomes...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28363779/genome-wide-analysis-and-expression-profiling-of-the-grf-gene-family-in-oilseed-rape-brassica-napus-l
#16
Jin-Qi Ma, Hong-Ju Jian, Bo Yang, Kun Lu, Ao-Xiang Zhang, Pu Liu, Jia-Na Li
Growth regulating-factors (GRFs) are plant-specific transcription factors that help regulate plant growth and development. Genome-wide identification and evolutionary analyses of GRF gene families have been performed in Arabidopsis thaliana, Zea mays, Oryza sativa, and Brassica rapa, but a comprehensive analysis of the GRF gene family in oilseed rape (Brassica napus) has not yet been reported. In the current study, we identified 35 members of the BnGRF family in B. napus. We analyzed the chromosomal distribution, phylogenetic relationships (Bayesian Inference and Neighbor Joining method), gene structures, and motifs of the BnGRF family members, as well as the cis-acting regulatory elements in their promoters...
March 28, 2017: Gene
https://www.readbyqxmd.com/read/28362994/identification-of-genes-related-to-floral-organ-development-in-pak-choi-by-expression-profiling
#17
H X Song, A M Ping, M X Sun, X H Qi, M Y Gao, X Y Xu, Z J Zhu, M L Li, L P Hou
Pak choi is a highly nutritious vegetable that is widely grown in China, Southeast Asia, and other parts of the world. Because it reproduces by seed, it is very important to understand the mechanism of floral organ development. Therefore, using the Chinese cabbage genome as a reference, this study analyzed the expression profiles of shoot apex genes at flower bud differentiation stages 1 and 5, in order to identify genes related to floral organ development. The results showed that the proportion of mapped genes was high, with 84...
March 30, 2017: Genetics and Molecular Research: GMR
https://www.readbyqxmd.com/read/28348571/population-structure-and-phylogenetic-relationships-in-a-diverse-panel-of-brassica-rapa-l
#18
Kevin A Bird, Hong An, Elodie Gazave, Michael A Gore, J Chris Pires, Larry D Robertson, Joanne A Labate
The crop species Brassica rapa L. has significant economic importance around the world. However, the global distribution and complex evolutionary history of the species has made investigating its genetic population structure difficult. Crop domestication and improvement has resulted in extreme phenotypic diversity and subspecies that are used for oilseed, food for human consumption, and fodder for livestock. These subspecies include the oilseed morphotypes. oleifera (turnip rape), ssp. dichotoma (brown sarson/toria), ssp...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28332757/selective-modes-determine-evolutionary-rates-gene-compactness-and-expression-patterns-in-brassica
#19
Yue Guo, Jing Liu, Jiefu Zhang, Shengyi Liu, Jianchang Du
It has been well documented that most nuclear protein-coding genes in organisms can be classified into two categories: positively selected genes (PSGs) and negatively selected genes (NSGs). The characteristics and evolutionary fates of different types of genes, however, have been poorly understood. In this study, the rates of nonsynonymous substitution (Ka ) and the rates of synonymous substitution (Ks ) were investigated by comparing the orthologs between the two sequenced Brassica species, Brassica rapa and Brassica oleracea, and the evolutionary rates, gene structures, expression patterns, and codon bias were compared between PSGs and NSGs...
March 23, 2017: Plant Journal: for Cell and Molecular Biology
https://www.readbyqxmd.com/read/28330247/production-of-glucosinolates-phenolic-compounds-and-associated-gene-expression-profiles-of-hairy-root-cultures-in-turnip-brassica-rapa-ssp-rapa
#20
Ill-Min Chung, Kaliyaperumal Rekha, Govindasamy Rajakumar, Muthu Thiruvengadam
Turnip (Brassica rapa ssp. rapa) is an important vegetable crop producing glucosinolates (GSLs) and phenolic compounds. The GSLs, phenolic compound contents and transcript levels in hairy root cultures, as well as their antioxidant, antimicrobial and anticancer activity were studied in turnip. Transgenic hairy root lines were confirmed by polymerase chain reaction (PCR) and reverse transcription-PCR. GSLs levels (glucoallysin, glucobrassicanapin, gluconasturtiin, glucobrassicin, 4-methoxyglucobrassicin, neoglucobrassicin and 4-hydroxyglucobrassicin) and their gene expression levels (BrMYB28, BrMYB29, BrMYB34, BrMYB51, BrMYB122, CYP79 and CYP83) significantly increased in hairy roots compared with that in non-transformed roots...
December 2016: 3 Biotech
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