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Brassica rapa

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https://www.readbyqxmd.com/read/28650458/duplicated-pollen-pistil-recognition-loci-control-intraspecific-unilateral-incompatibility-in-brassica-rapa
#1
Yoshinobu Takada, Kohji Murase, Hiroko Shimosato-Asano, Takahiro Sato, Honoka Nakanishi, Keita Suwabe, Kentaro K Shimizu, Yong Pyo Lim, Seiji Takayama, Go Suzuki, Masao Watanabe
In plants, cell-cell recognition is a crucial step in the selection of optimal pairs of gametes to achieve successful propagation of progeny. Flowering plants have evolved various genetic mechanisms, mediated by cell-cell recognition, to enable their pistils to reject self-pollen, thus preventing inbreeding and the consequent reduced fitness of progeny (self-incompatibility, SI), and to reject foreign pollen from other species, thus maintaining species identity (interspecific incompatibility)(1). In the genus Brassica, the SI system is regulated by an S-haplotype-specific interaction between a stigma-expressed female receptor (S receptor kinase, SRK) and a tapetum cell-expressed male ligand (S locus protein 11, SP11), encoded by their respective polymorphic genes at the S locus(2-6)...
June 26, 2017: Nature Plants
https://www.readbyqxmd.com/read/28647368/identification-and-characterization-of-the-leaf-specific-networks-of-inner-and-rosette-leaves-in-brassica-rapa
#2
Man-Sun Kim, Seongmin Hong, Devaraj Sangeeth Prasath, Subin Im, Jeong-Rae Kim, Yong Pyo Lim
Inner and rosette leaves of Chinese cabbage (Brassica rapa) have different characteristics in terms of nutritional value, appearance, taste, color and texture. Many researchers have utilized differentially expressed genes for exploring the difference between inner and rosette leaves of Brassica rapa. The functional characteristics of a gene, however, is determined by complex interactions between genes. Hence, a noble network approach is required for elucidating such functional difference that is not captured by gene expression profiles alone...
June 21, 2017: Biochemical and Biophysical Research Communications
https://www.readbyqxmd.com/read/28645261/genome-wide-analysis-of-udp-glycosyltransferase-super-family-in-brassica-rapa-and-brassica-oleracea-reveals-its-evolutionary-history-and-functional-characterization
#3
Jingyin Yu, Fan Hu, Komivi Dossa, Zhaokai Wang, Tao Ke
BACKGROUND: Glycosyltransferases comprise a highly divergent and polyphyletic multigene family that is involved in widespread modification of plant secondary metabolites in a process called glycosylation. According to conserved domains identified in their amino acid sequences, these glycosyltransferases can be classified into a single UDP-glycosyltransferase (UGT) 1 superfamily. RESULTS: We performed genome-wide comparative analysis of UGT genes to trace evolutionary history in algae, bryophytes, pteridophytes, and angiosperms; then, we further investigated the expansion mechanisms and function characterization of UGT gene families in Brassica rapa and Brassica oleracea...
June 23, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28640193/identification-of-light-independent-anthocyanin-biosynthesis-mutants-induced-by-ethyl-methane-sulfonate-in-turnip-tsuda-brassica-rapa
#4
Jian-Fei Yang, Yun-Zhu Chen, Saneyuki Kawabata, Yu-Hua Li, Yu Wang
The epidermis of swollen storage roots in purple cultivars of turnip "Tsuda" (Brassica rapa) accumulates anthocyanin in a light-dependent manner, especially in response to UV-A light, of which the mechanism is unclear. In this study, we mutagenized 15,000 seeds by 0.5% (v/v) ethyl methane sulfonate (EMS) and obtained 14 mutants with abnormal anthocyanin production in their epidermis of swollen storage roots. These mutants were classified into two groups: the red mutants with constitutive anthocyanin accumulation in their epidermis of storage roots even in underground parts in darkness and the white mutants without anthocyanin accumulation in the epidermis of storage roots in aboveground parts exposed to sunlight...
June 22, 2017: International Journal of Molecular Sciences
https://www.readbyqxmd.com/read/28623821/green-biosynthesis-of-magnetic-iron-oxide-fe3o4-nanoparticles-using-the-aqueous-extracts-of-food-processing-wastes-under-photo-catalyzed-condition-and-investigation-of-their-antimicrobial-and-antioxidant-activity
#5
Jayanta Kumar Patra, Kwang-Hyun Baek
In this study, a simple, rapid, and eco-friendly green method was introduced to synthesize magnetite iron oxide nanoparticles (Fe3O4 NPs) using the aqueous extracts of two food processing wastes, namely silky hairs of corn (Zea mays L.) and outer leaves of Chinese cabbage (Brassica rapa L. subsp. pekinensis). The boiled solutions of silky hairs (MH) and outer leaves of Chinese cabbage (CCP) were used to synthesize Fe3O4 NPs under photo exposed condition. The MH-FeNPs and CCP-FeNPs synthesized via green route were characterized by UV-Vis spectroscopy, field emission scanning electron microscopy (FE-SEM), energy-dispersive X-ray spectroscopy (EDX), Fourier-transform infrared spectroscopy (FT-IR), X-ray diffraction (XRD), differential thermogravimetric (TG/DTG) analysis, and vibrating sample magnetometer (VSM) analysis...
June 8, 2017: Journal of Photochemistry and Photobiology. B, Biology
https://www.readbyqxmd.com/read/28623022/heterogeneity-of-zeolite-combined-with-biochar-properties-as-a-function-of-sewage-sludge-composting-and-production-of-nutrient-rich-compost
#6
Mukesh Kumar Awasthi, Meijing Wang, Ashok Pandey, Hongyu Chen, Sanjeev Kumar Awasthi, Quan Wang, Xiuna Ren, Altaf Hussain Lahori, Dong-Sheng Li, Ronghua Li, Zengqiang Zhang
In the present study, biochar combined with a higher dosage of zeolite (Z) and biochar (B) alone were applied as additives for dewatered fresh sewage sludge (DFSS) composting using 130-L working volume lab-scale reactors. We first observed that the addition of a mixture of B and Z to DFSS equivalent to 12%B+10% (Z-1), 15% (Z-2) and 30% (Z-3) zeolite (dry weight basis) worked synergistically as an amendment and increased the composting efficiency compared with a treatment of 12%B alone amended and a control without any amendment...
June 13, 2017: Waste Management
https://www.readbyqxmd.com/read/28618783/pulsed-light-emitting-diodes-for-higher-phytochemical-level-in-microgreens
#7
Viktorija Vaštakaitė, Akvilė Viršilė, Aušra Brazaitytė, Giedrė Samuolienė, Julė Jankauskienė, Algirdas Novičkovas, Pavelas Duchovskis
A novel research of pulsed LED lighting versus continuous lighting was conducted by analyzing phytochemicals levels in microgreens. Red pak choi (Brassica rapa var. chinensis), mustard (Brassica juncea L.) and tatsoi (Brassica rapa var. rosularis) were grown indoors under HPS lamps supplemented with monochromatic (455 nm, 470 nm, 505 nm, 590 nm and 627 nm) LEDs (total PPFD 200±10 µmol m(-2) s(-1); 16 h day(-1)). For pulsed light treatments, the frequencies at 2 Hz, 32 Hz, 256 Hz, and 1024 Hz with a duty cycle of 50% of monochromatic LEDs were applied...
June 15, 2017: Journal of Agricultural and Food Chemistry
https://www.readbyqxmd.com/read/28615665/trilocular-phenotype-in-brassica-juncea-l-resulted-from-interruption-of-clavata1-gene-homologue-bjmc1-transcription
#8
Ping Xu, Shiqin Cao, Kaining Hu, Xiaohua Wang, Wei Huang, Gang Wang, Zewen Lv, Zhongsong Liu, Jing Wen, Bin Yi, Chaozhi Ma, Jinxing Tu, Tingdong Fu, Jinxiong Shen
As a desirable agricultural trait, multilocular trait of rapeseed (Brassica rapa; Brassica napus; Brassica juncea), always represents higher yield per plant compared with bilocular plants. We previously isolated a trilocular gene locus, Bjmc1, and identified a set of molecular markers linked to the trilocular gene. With a map-based cloning, we identified that the BjMc1 was located in B genome of Brassica juncea, and it was a CLAVATA1 (CLV1) gene homologue. The insertion of a copia-LTR retrotransposable element 1 (RTE1) into the coding region of BjMc1 interrupted its transcription in rapeseed, leading to the trilocular phenotype...
June 14, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28594365/brwrky65-a-wrky-transcription-factor-is-involved-in-regulating-three-leaf-senescence-associated-genes-in-chinese-flowering-cabbage
#9
Zhong-Qi Fan, Xiao-Li Tan, Wei Shan, Jian-Fei Kuang, Wang-Jin Lu, Jian-Ye Chen
Plant-specific WRKY transcription factors (TFs) have been implicated to function as regulators of leaf senescence, but their association with postharvest leaf senescence of economically important leafy vegetables, is poorly understood. In this work, the characterization of a Group IIe WRKY TF, BrWRKY65, from Chinese flowering cabbage (Brassica rapa var. parachinensis) is reported. The expression of BrWRKY65 was up-regulated following leaf chlorophyll degradation and yellowing during postharvest senescence. Subcellular localization and transcriptional activation assays showed that BrWRKY65 was localized in the nucleus and exhibited trans-activation ability...
June 8, 2017: International Journal of Molecular Sciences
https://www.readbyqxmd.com/read/28584277/analysis-of-aquaporins-in-brassicaceae-species-reveals-high-level-of-conservation-and-dynamic-role-against-biotic-and-abiotic-stress-in-canola
#10
Humira Sonah, Rupesh K Deshmukh, Caroline Labbé, Richard R Bélanger
Aquaporins (AQPs) are of vital importance in the cellular transport system of all living organisms. In this study, genome-wide identification, distribution, and characterization of AQPs were determined in Arabidopsis lyrata, Capsella grandiflora, C. rubella, Eutrema salsugineum, Brassica rapa, B. oleracea, and B. napus (canola). Classification and phylogeny of AQPs revealed the loss of XIPs and NIP-IIIs in all species. Characterization of distinctive AQP features showed a high level of conservation in spacing between NPA-domains, and selectivity filters...
June 5, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28577084/integrated-analysis-of-leaf-morphological-and-color-traits-in-different-populations-of-chinese-cabbage-brassica-rapa-ssp-pekinensis
#11
Su Ryun Choi, Xiaona Yu, Vignesh Dhandapani, Xiaonan Li, Zhi Wang, Seo Yeon Lee, Sang Heon Oh, Wenxing Pang, Nirala Ramchiary, Chang Pyo Hong, Suhyoung Park, Zhongyun Piao, HyeRan Kim, Yong Pyo Lim
QTLs and candidate gene markers associated with leaf morphological and color traits were identified in two immortalized populations of Brassica rapa, which will provide genetic information for marker-assisted breeding. Brassica rapa is an important leafy vegetable consumed worldwide and morphology is a key character for its breeding. To enhance genetic control, quantitative trait loci (QTLs) for leaf color and plant architecture were identified using two immortalized populations with replications of 2 and 4 years...
June 2, 2017: TAG. Theoretical and Applied Genetics. Theoretische und Angewandte Genetik
https://www.readbyqxmd.com/read/28571580/exposure-to-trace-amounts-of-sulfonylurea-herbicide-tribenuron-methyl-causes-male-sterility-in-17-species-or-subspecies-of-cruciferous-plants
#12
Cheng-Yu Yu, Jun-Gang Dong, Sheng-Wu Hu, Ai-Xia Xu
BACKGROUND: For most cruciferous plants, which are known as important crops and a number of weeds, hybrid breeding is hampered by the unavailability of a pollination control system. Male sterility induced by a gametocide can be useful for the utilization of plant heterosis. RESULTS: The gametocidal effect of sulfonylurea herbicide tribenuron-methyl was tested across seventeen cruciferous species or subspecies including Brassica juncea, B. carinata, B. oleracea ssp...
June 1, 2017: BMC Plant Biology
https://www.readbyqxmd.com/read/28553302/transcriptome-analysis-of-floral-buds-deciphered-an-irregular-course-of-meiosis-in-polyploid-brassica-rapa
#13
Janeen Braynen, Yan Yang, Fang Wei, Gangqiang Cao, Gongyao Shi, Baoming Tian, Xiaowei Zhang, Hao Jia, Xiaochun Wei, Zhenzhen Wei
Polyploidy is a fundamental process in plant evolution. Understanding the polyploidy-associated effects on plant reproduction is essential for polyploid breeding program. In the present study, our cytological analysis firstly demonstrated that an overall course of meiosis was apparently distorted in the synthetic polyploid Brassica rapa in comparison with its diploid progenitor. To elucidate genetic basis of this irregular meiosis at a molecular level, the comparative RNA-seq analysis was further used to investigate differential genetic regulation of developing floral buds identified at meiosis between autotetraploid and diploid B...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28546385/using-rna-seq-for-genomic-scaffold-placement-correcting-assemblies-and-genetic-map-creation-in-a-common-brassica-rapa-mapping-population
#14
R J Cody Markelz, Michael F Covington, Marcus T Brock, Upendra K Devisetty, Daniel J Kliebenstein, Cynthia Weinig, Julin N Maloof
Brassica rapa is a model species for agronomic, ecological, evolutionary and translational studies. Here we describe high-density SNP discovery and genetic map construction for a Brassica rapa recombinant inbred line (RIL) population derived from field collected RNA-seq data. This high-density genotype data enables the detection and correction of putative genome mis-assemblies and accurate assignment of scaffold sequences to their likely genomic locations. These assembly improvements represent 7.1-8.0% of the annotated Brassica rapa genome...
May 25, 2017: G3: Genes—Genomes—Genetics
https://www.readbyqxmd.com/read/28526964/characterization-of-a-new-isolate-of-pepper-chlorotic-spot-virus-from-yunnan-province-china
#15
Kuanyu Zheng, Tsung-Chi Chen, Shyi-Dong Yeh, Md Siddiqur Rahman, Xiaoxia Su, Kuo Wu, Ting Li, Zhongkai Zhang, Jiahong Dong
A new isolate, 14YV733, of pepper chlorotic spot virus (PCSV) from chili peppers in Yunnan province of China was identified. The typical tospoviral particles of 80-120 nm in diameter were observed by electron microscopy. The virus caused systemic symptoms in several solanaceous plants and the Brassica rapa L. Chinensis group with mechanical inoculation. The sap from infected leaves reacted positively to a rabbit antibody to the N protein of watermelon silver mottle virus (WSMoV) in immunoblotting. The S, M, and L RNAs of PCSV-14YV733 are 3310 nts, 4711 nts, and 8913 nts long, respectively...
May 19, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28504909/ethanol-extract-of-brassica-rapa-ssp-pekinensis-suppresses-tumor-necrosis-factor-%C3%AE-induced-inflammatory-response-in-human-umbilical-vein-endothelial-cells
#16
Hee Kyoung Joo, Sunga Choi, Yu Ran Lee, Eun Ok Lee, Myoung Soo Park, Yong Pyo Lim, Jong-Tae Park, Byeong Hwa Jeon
Brassica rapa L. ssp. pekinensis, commonly known as Chinese cabbage, is a cruciferous vegetable traditionally consumed in east Asia. Although its habitual consumption could account for the low incidence of chronic vascular inflammation, the therapeutic and protective potential of phytochemicals derived from Chinese cabbage has been poorly studied. In this study, we identified the phenolic compounds, kaempferol and quercetin, from the ethanol extract of Chinese cabbage (EtCC). We show for the first time that EtCC contains effective phytochemicals that suppress tumor necrosis factor (TNF)-α-induced inflammatory response in human umbilical vein endothelial cells...
May 2017: Journal of Medicinal Food
https://www.readbyqxmd.com/read/28503182/genome-wide-snp-markers-based-on-slaf-seq-uncover-breeding-traces-in-rapeseed-brassica-napus-l
#17
Qinghong Zhou, Can Zhou, Wei Zheng, Annaliese S Mason, Shuying Fan, Caijun Wu, Donghui Fu, Yingjin Huang
Single Nucleotide Polymorphisms (SNPs) are the most abundant and richest form of genomic polymorphism, and hence make highly favorable markers for genetic map construction and genome-wide association studies. In this study, a total of 300 rapeseed accessions (278 representative of Chinese germplasm, plus 22 outgroup accessions of different origins and ecotypes) were collected and sequenced using Specific-Locus Amplified Fragment Sequencing (SLAF-seq) technology, obtaining 660.25M reads with an average sequencing depth of 6...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28493942/amplifying-recombination-genome-wide-and-reshaping-crossover-landscapes-in-brassicas
#18
Alexandre Pelé, Matthieu Falque, Gwenn Trotoux, Frédérique Eber, Sylvie Nègre, Marie Gilet, Virginie Huteau, Maryse Lodé, Thibaut Jousseaume, Sylvain Dechaumet, Jérôme Morice, Charles Poncet, Olivier Coriton, Olivier C Martin, Mathieu Rousseau-Gueutin, Anne-Marie Chèvre
Meiotic recombination by crossovers (COs) is tightly regulated, limiting its key role in producing genetic diversity. However, while COs are usually restricted in number and not homogenously distributed along chromosomes, we show here how to disrupt these rules in Brassica species by using allotriploid hybrids (AAC, 2n = 3x = 29), resulting from the cross between the allotetraploid rapeseed (B. napus, AACC, 2n = 4x = 38) and one of its diploid progenitors (B. rapa, AA, 2n = 2x = 20). We produced mapping populations from different genotypes of both diploid AA and triploid AAC hybrids, used as female and/or as male...
May 2017: PLoS Genetics
https://www.readbyqxmd.com/read/28487711/in-silico-identification-of-mimicking-molecules-as-defense-inducers-triggering-jasmonic-acid-mediated-immunity-against-alternaria-blight-disease-in-brassica-species
#19
Rajesh K Pathak, Mamta Baunthiyal, Rohit Shukla, Dinesh Pandey, Gohar Taj, Anil Kumar
Alternaria brassicae and Alternaria brassicicola are two major phytopathogenic fungi which cause Alternaria blight, a recalcitrant disease on Brassica crops throughout the world, which is highly destructive and responsible for significant yield losses. Since no resistant source is available against Alternaria blight, therefore, efforts have been made in the present study to identify defense inducer molecules which can induce jasmonic acid (JA) mediated defense against the disease. It is believed that JA triggered defense response will prevent necrotrophic mode of colonization of Alternaria brassicae fungus...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28481284/cultivar-specific-changes-in-primary-and-secondary-metabolites-in-pak-choi-brassica-rapa-chinensis-group-by-methyl-jasmonate
#20
Moo Jung Kim, Yu-Chun Chiu, Na Kyung Kim, Hye Min Park, Choong Hwan Lee, John A Juvik, Kang-Mo Ku
Glucosinolates, their hydrolysis products and primary metabolites were analyzed in five pak choi cultivars to determine the effect of methyl jasmonate (MeJA) on metabolite flux from primary metabolites to glucosinolates and their hydrolysis products. Among detected glucosinolates (total 14 glucosinolates; 9 aliphatic, 4 indole and 1 aromatic glucosinolates), indole glucosinolate concentrations (153-229%) and their hydrolysis products increased with MeJA treatment. Changes in the total isothiocyanates by MeJA were associated with epithiospecifier protein activity estimated as nitrile formation...
May 7, 2017: International Journal of Molecular Sciences
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