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Brassica rapa

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https://www.readbyqxmd.com/read/28932230/high-density-linkage-map-construction-and-qtl-detection-for-three-silique-related-traits-in-orychophragmus-violaceus-derived-brassica-napus-population
#1
Yi Yang, Yusen Shen, Shunda Li, Xianhong Ge, Zaiyun Li
Seeds per silique (SS), seed weight (SW), and silique length (SL) are important determinant traits of seed yield potential in rapeseed (Brassica napus L.), and are controlled by naturally occurring quantitative trait loci (QTLs). Mapping QTLs to narrow chromosomal regions provides an effective means of characterizing the genetic basis of these complex traits. Orychophragmus violaceus is a crucifer with long siliques, many SS, and heavy seeds. A novel B. napus introgression line with many SS was previously selected from multiple crosses (B...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28928761/hormonal-regulation-in-shade-avoidance
#2
REVIEW
Chuanwei Yang, Lin Li
At high vegetation density, shade-intolerant plants sense a reduction in the red (660 nm) to far-red (730 nm) light ratio (R/FR) in addition to a general reduction in light intensity. These light signals trigger a spectrum of morphological changes manifested by growth of stem-like tissue (hypocotyl, petiole, etc.) instead of harvestable organs (leaves, fruits, seeds, etc.)-namely, shade avoidance syndrome (SAS). Common phenotypical changes related to SAS are changes in leaf hyponasty, an increase in hypocotyl and internode elongation and extended petioles...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28923019/evolutionary-history-and-functional-divergence-of-the-cytochrome-p450-gene-superfamily-between-arabidopsis-thaliana-and-brassica-species-uncover-effects-of-whole-genome-and-tandem-duplications
#3
Jingyin Yu, Sadia Tehrim, Linhai Wang, Komivi Dossa, Xiurong Zhang, Tao Ke, Boshou Liao
BACKGROUND: The cytochrome P450 monooxygenase (P450) superfamily is involved in the biosynthesis of various primary and secondary metabolites. However, little is known about the effects of whole genome duplication (WGD) and tandem duplication (TD) events on the evolutionary history and functional divergence of P450s in Brassica after splitting from a common ancestor with Arabidopsis thaliana. RESULTS: Using Hidden Markov Model search and manual curation, we detected that Brassica species have nearly 1...
September 18, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28921776/transcriptional-responses-to-short-term-and-long-term-host-plant-experience-and-parasite-load-in-an-oligophagous-beetle
#4
Caroline Müller, Heiko Vogel, David G Heckel
Oligophagous herbivores must adjust their enzymatic machinery to the different host plant species they consume. If different hosts are used from one generation to the next, adaptation may be highly plastic, while if a single host is used over several generations there may be a longer-term response due to natural selection. Using an experimental evolutionary approach, we investigated effects of long-term experience versus short-term responses to different host plants in the oligophagous mustard leaf beetle Phaedon cochleariae...
September 16, 2017: Molecular Ecology
https://www.readbyqxmd.com/read/28921773/performance-of-aneuploid-backcross-hybrids-between-the-crop-brassica-napus-and-its-wild-relative-b-rapa
#5
Tom J de Jong, Karla Escobedo Quevedo, Karin C A M van der Veen-van Wijk, Mahmoud Moshgani
Crossings between the diploid wild Brassica rapa (AA, 2n=20) and the tetraploid cultivar B. napus (AACC, 2n=38) can readily be made. Backcrosses to the wild B. rapa (BC1 ) produce aneuploids with variable chromosome numbers between 20 and 29. How does survival and performance relate to DNA content of plants? Growth of the BC1 plants was measured in the lab. One plant in the F1 self-pollinated spontaneously and produced abundant F2 seeds that were also examined. The number of C-chromosomes was estimated from DNA-values obtained with flow cytometry...
September 16, 2017: Plant Biology
https://www.readbyqxmd.com/read/28904265/changes-in-gut-microbial-ecology-and-immunological-responses-of-mice-fed-the-insoluble-fraction-of-brassica-rapa-l-that-was-fermented-or-not
#6
Sachi Tanaka, Kana Yamamoto, Chisato Hamajima, Fuka Takahashi, Kazuki Yamada, Kanon Furuya, Yutaka Uyeno
We aimed to investigate the effects of feeding fermented Brassica rapa L. on ecological and immunological changes in the mouse gut using in vitro cultivation tests and in vivo experiments in normal mice. In the preliminary in vitro study, two B. rapa L. products from different fermentation periods (one d [SF] or six months [LF]) were evaluated along with non-fermented vegetables (NF). Among the components of each product, the insoluble fraction resulted in the most prominent change such as a relative increase in butyrate production during a cultivation inoculated with mouse cecum contents...
September 12, 2017: Microbes and Environments
https://www.readbyqxmd.com/read/28895882/physiological-and-transcriptomic-responses-of-chinese-cabbage-brassica-rapa-l-ssp-pekinensis-to-salt-stress
#7
Nianwei Qiu, Qian Liu, Jingjuan Li, Yihui Zhang, Fengde Wang, Jianwei Gao
Salt stress is one of the major abiotic stresses that severely impact plant growth and development. In this study, we investigated the physiological and transcriptomic responses of Chinese cabbage "Qingmaye" to salt stress, a main variety in North China. Our results showed that the growth and photosynthesis of Chinese cabbage were significantly inhibited by salt treatment. However, as a glycophyte, Chinese cabbage could cope with high salinity; it could complete an entire life cycle at 100 mM NaCl. The high salt tolerance of Chinese cabbage was achieved by accumulating osmoprotectants and by maintaining higher activity of antioxidant enzymes...
September 12, 2017: International Journal of Molecular Sciences
https://www.readbyqxmd.com/read/28873525/development-of-validated-high-temperature-reverse-phase-uhplc-pda-analytical-method-for-simultaneous-analysis-of-five-natural-isothiocyanates-in-cruciferous-vegetables
#8
Robin, Rohit Arora, Saroj Arora, Adarsh Pal Vig
In the present study reverse-phase UHPLC-PDA technique was developed at 60°C for simultaneous quantification of allyl, 3-butenyl, 4-(methylthio)butyl, benzyl and phenethyl isothiocyanates. The validation parameter showed a very good linearity, with a correlation coefficient of 1.00 for all detected standard analytes. Also, high precision and accuracy were observed with lowest obtained values of 1.39% and 99.1%, respectively. Different varieties of three plants, viz. Brassica rapa var. rapa L., Raphanus sativus L...
January 15, 2018: Food Chemistry
https://www.readbyqxmd.com/read/28855913/characteristics-of-color-development-in-seeds-of-brown-and-yellow-seeded-heading-chinese-cabbage-and-molecular-analysis-of-brsc-the-candidate-gene-controlling-seed-coat-color
#9
Yanjing Ren, Qiong He, Xiaomin Ma, Lugang Zhang
The proanthocyanidin (PA) is the main flavonoids which affect the seed coat color in Brassica species. In this paper, characteristics of color development and accumulation of flavonoids were analyzed in the seeds of brown-seeded (B147) and yellow-seeded (B80) heading Chinese cabbage (Brassica rapa L. ssp. Pekinensis). It is found that the content of phenolic compounds in B147 were significantly more than that of B80 by using dimethylaminocinnamaldehyde (DMACA) staining and toluidine blue O (TBO) staining. In previous studies, the locus associated with seed coat color has been mapped...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28853642/the-ribosomal-protein-rply-is-required-for-pectobacterium-carotovorum-virulence-and-is-induced-by-zantedeschia-elliotiana-extract
#10
Huan Jiang, Mengyi Jiang, Liuke Yang, Peiyan Yao, Lin Ma, Chunting Wang, Huan Wang, Gouliang Qian, Baishi Hu, Jiaqin Fan
Pectobacterium carotovorum subsp. carotovorum strain PccS1, a bacterial pathogen causing soft rot disease of Zantedeschia elliotiana (colored calla), was investigated for virulence genes induced by the host plant. Using a promoter-trap transposon (mariner), we obtained 500 transposon mutants showing kanamycin resistance dependent on extract of Z. elliotiana. One of these mutants, PM86, exhibited attenuated virulence on both Z. elliotiana and Brassica rapa subsp. pekinensis. The growth of PM86 was also reduced in minimal medium (MM), and the reduction was restored by adding plant extract to the MM...
August 30, 2017: Phytopathology
https://www.readbyqxmd.com/read/28826479/temporal-network-analysis-identifies-early-physiological-and-transcriptomic-indicators-of-mild-drought-in-brassica-rapa
#11
Kathleen Greenham, Carmela Rosaria Guadagno, Malia A Gehan, Todd C Mockler, Cynthia Weinig, Brent E Ewers, C Robertson McClung
The dynamics of local climates make development of agricultural strategies challenging. Yield improvement has progressed slowly, especially in drought-prone regions where annual crop production suffers from episodic aridity. Underlying drought responses are circadian and diel control of gene expression that regulate daily variations in metabolic and physiological pathways. To identify transcriptomic changes that occur in the crop Brassica rapa during initial perception of drought, we applied a co-expression network approach to associate rhythmic gene expression changes with physiological responses...
August 18, 2017: ELife
https://www.readbyqxmd.com/read/28819684/comparison-of-transcriptome-profiles-by-fusarium-oxysporum-inoculation-between-fusarium-yellows-resistant-and-susceptible-lines-in-brassica-rapa-l
#12
Naomi Miyaji, Motoki Shimizu, Junji Miyazaki, Kenji Osabe, Maho Sato, Yusuke Ebe, Satoko Takada, Makoto Kaji, Elizabeth S Dennis, Ryo Fujimoto, Keiichi Okazaki
Resistant and susceptible lines in Brassica rapa have different immune responses against Fusarium oxysporum inoculation. Fusarium yellows caused by Fusarium oxysporum f. sp. conglutinans (Foc) is an important disease of Brassicaceae; however, the mechanism of how host plants respond to Foc is still unknown. By comparing with and without Foc inoculation in both resistant and susceptible lines of Chinese cabbage (Brassica rapa var. pekinensis), we identified differentially expressed genes (DEGs) between the bulked inoculated (6, 12, 24, and 72 h after inoculation (HAI)) and non-inoculated samples...
August 17, 2017: Plant Cell Reports
https://www.readbyqxmd.com/read/28799009/genome-wide-survey-and-characterization-of-fatty-acid-desaturase-gene-family-in-brassica-napus-and-its-parental-species
#13
Yufei Xue, Baojun Chen, Rui Wang, Aung Naing Win, Jiana Li, Yourong Chai
Rapeseed (Brassica napus) is an important oilseed crop worldwide, and fatty acid (FA) compositions determine the nutritional and economic value of its seed oil. Fatty acid desaturases (FADs) play a pivotal role in regulating FA compositions, but to date, no comprehensive genome-wide analysis of FAD gene family in rapeseed and its parent species has been reported. In this study, using homology searches, 84, 45, and 44 FAD genes were identified in rapeseed, Brassica rapa, and Brassica oleracea genomes, respectively...
August 10, 2017: Applied Biochemistry and Biotechnology
https://www.readbyqxmd.com/read/28797073/assessment-of-veterinary-drugs-in-plants-using-pharmacokinetic-approaches-the-absorption-distribution-and-elimination-of-tetracycline-and-sulfamethoxazole-in-ephemeral-vegetables
#14
Hui-Ru Chen, Tirawat Rairat, Shih-Hurng Loh, Yu-Chieh Wu, Thomas W Vickroy, Chi-Chung Chou
The present study was carried out to demonstrate novel use of pharmacokinetic approaches to characterize drug behaviors/movements in the vegetables with implications to food safety. The absorption, distribution, metabolism and most importantly, the elimination of tetracycline (TC) and sulfamethoxazole (SMX) in edible plants Brassica rapa chinensis and Ipomoea aquatica grown hydroponically were demonstrated and studied using non-compartmental pharmacokinetic analysis. The results revealed drug-dependent and vegetable-dependent pharmacokinetic differences and indicated that ephemeral vegetables could have high capacity accumulating antibiotics (up to 160 μg g-1 for TC and 38 μg g-1 for SMX) within hours...
2017: PloS One
https://www.readbyqxmd.com/read/28789614/comparative-transcriptome-analysis-reveals-key-cadmium-transport-related-genes-in-roots-of-two-pak-choi-brassica-rapa-l-ssp-chinensis-cultivars
#15
Rugang Yu, Dan Li, Xueling Du, Shenglan Xia, Caifeng Liu, Gangrong Shi
BACKGROUND: Cadmium translocation from roots to shoots is a complex biological process that is controlled by gene regulatory networks. Pak choi exhibits wide cultivar variations in Cd accumulation. However, the molecular mechanism involved in cadmium translocation and accumulation is still unclear. To isolate differentially expressed genes (DEGs) involved in transporter-mediated regulatory mechanisms of Cd translocation in two contrasting pak choi cultivars, Baiyewuyueman (B, high Cd accumulator) and Kuishan'aijiaoheiye (K, low Cd accumulator), eight cDNA libraries from the roots of two cultivars were constructed and sequenced by RNA-sequencing...
August 8, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28767102/allocation-to-male-vs-female-floral-function-varies-by-currency-and-responds-differentially-to-density-and-moisture-stress
#16
M T Brock, R L Winkelman, M J Rubin, C E Edwards, B E Ewers, C Weinig
Allocation of finite resources to separate reproductive functions is predicted to vary across environments and affect fitness. Biomass is the most commonly measured allocation currency; however, in comparison with nutrients it may be less limited and express different environmental and evolutionary responses. Here, we measured carbon, nitrogen, phosphorus, and biomass allocation among floral whorls in recombinant inbred lines of Brassica rapa in multiple environments to characterize the genetic architecture of floral allocation, including its sensitivity to environmental heterogeneity and to choice of currency...
August 2, 2017: Heredity
https://www.readbyqxmd.com/read/28751801/drought-tolerant-brassica-rapa-shows-rapid-expression-of-gene-networks-for-general-stress-responses-and-programmed-cell-death-under-simulated-drought-stress
#17
Yi Ming Guo, Birgit Samans, Sheng Chen, Kidist B Kibret, Sarah Hatzig, Neil C Turner, Matthew N Nelson, Wallace A Cowling, Rod J Snowdon
Production of oilseed rape/canola (Brassica napus) is increasingly threatened by dry conditions while the demand for vegetable oil is increasing. Brassica rapa is a genetically diverse ancestor of B. napus, and is readily crossed with B. napus. Recently, we reported promising levels of drought tolerance in a wild type of B. rapa which could be a source of drought tolerance for B. napus. We analysed global gene expression by messenger RNA sequencing in seedlings of the drought-tolerant and a drought-sensitive genotype of B...
2017: Plant Molecular Biology Reporter
https://www.readbyqxmd.com/read/28744174/analysis-of-cold-resistance-and-identification-of-ssr-markers-linked-to-cold-resistance-genes-in-brassica-rapa-l
#18
Zhen Huang, Xuexian Zhang, Shouhua Jiang, Mengfan Qin, Na Zhao, Lina Lang, Yaping Liu, Zhengshu Tian, Xia Liu, Yang Wang, Binbin Zhang, Aixia Xu
Currently, cold temperatures are one of the main factors threatening rapeseed production worldwide; thus, it is imperative to identify cold-resistant germplasm and to cultivate cold-resistant rapeseed varieties. In this study, the cold resistance of four Brassica rapa varieties was analyzed. The cold resistance of Longyou6 and Longyou7 was better than that of Tianyou2 and Tianyou4. Thus, an F2 population derived from Longyou6 and Tianyou4 was used to study the correlation of cold resistance and physiological indexes...
June 2017: Breeding Science
https://www.readbyqxmd.com/read/28743951/genome-wide-analysis-and-expression-divergence-of-the-trihelix-family-in-brassica-rapa-insight-into-the-evolutionary-patterns-in-plants
#19
Wenli Wang, Peng Wu, TongKong Liu, Haibo Ren, Ying Li, Xilin Hou
Trihelix gene family is an important transcription factor (TF) family involved in plants' growth and development. This extensive study of trihelix genes from Arabidopsis thaliana to Brassica rapa could shed light on the evolution in plants and support crop breeding. In this study, a total of 52 trihelix genes were identified in B.rapa. Whole-genome annotation, molecular-evolution and gene-expression analyses of all known trihelix genes were conducted. By statistics of the number of trihelix genes in each species, we found the expansion of trihelix gene family started with angiosperm evolution...
July 25, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28736570/genome-wide-identification-and-functional-analysis-of-the-calcineurin-b-like-protein-and-calcineurin-b-like-protein-interacting-protein-kinase-gene-families-in-turnip-brassica-rapa-var-rapa
#20
Xin Yin, Qiuli Wang, Qian Chen, Nan Xiang, Yunqiang Yang, Yongping Yang
The calcineurin B-like protein (CBL)-CBL-interacting protein kinase (CIPK) complex has been identified as a primary component in calcium sensors that perceives various stress signals. Turnip (Brassica rapa var. rapa) has been widely cultivated in the Qinghai-Tibet Plateau for a century as a food crop of worldwide economic significance. These CBL-CIPK complexes have been demonstrated to play crucial roles in plant response to various environmental stresses. However, no report is available on the genome-wide characterization of these two gene families in turnip...
2017: Frontiers in Plant Science
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