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https://www.readbyqxmd.com/read/28054984/detection-of-ribosomal-dna-sequence-polymorphisms-in-the-protist-plasmodiophora-brassicae-for-the-identification-of-geographical-isolates
#1
Rawnak Laila, Arif Hasan Khan Robin, Kiwoung Yang, Gyung Ja Choi, Jong-In Park, Ill-Sup Nou
Clubroot is a soil-borne disease caused by the protist Plasmodiophora brassicae (P. brassicae). It is one of the most economically important diseases of Brassica rapa and other cruciferous crops as it can cause remarkable yield reductions. Understanding P. brassicae genetics, and developing efficient molecular markers, is essential for effective detection of harmful races of this pathogen. Samples from 11 Korean field populations of P. brassicae (geographic isolates), collected from nine different locations in South Korea, were used in this study...
January 4, 2017: International Journal of Molecular Sciences
https://www.readbyqxmd.com/read/28050618/clubroot-resistance-qtl-are-modulated-by-nitrogen-input-in-brassica-napus
#2
A Laperche, Y Aigu, M Jubault, M Ollier, S Guichard, P Glory, S E Strelkov, A Gravot, M J Manzanares-Dauleux
Nitrogen levels can modulate the effectiveness of clubroot resistance in an isolate- and host-specific manner. While the same QTL were detected under high and low nitrogen, their effects were altered. Clubroot, caused by Plasmodiophora brassicae, is one of the most damaging diseases of oilseed rape and is known to be affected by nitrogen fertilization. However, the genetic factors involved in clubroot resistance have not been characterized under nitrogen-limiting conditions. This study aimed to assess the variability of clubroot resistance under different nitrogen levels and to characterize the impact of nitrogen supply on genetic resistance factors...
January 3, 2017: TAG. Theoretical and Applied Genetics. Theoretische und Angewandte Genetik
https://www.readbyqxmd.com/read/28013378/the-tandem-repeated-organization-of-nb-lrr-genes-in-the-clubroot-resistant-crb-locus-in-brassica-rapa-l
#3
Katsunori Hatakeyama, Tomohisa Niwa, Takeyuki Kato, Takayoshi Ohara, Tomohiro Kakizaki, Satoru Matsumoto
To facilitate prevention of clubroot disease, a major threat to the successful cultivation of Chinese cabbage (Brassica rapa L.), we bred clubroot-resistant (CR) cultivars by introducing resistance genes from CR turnips via conventional breeding. Among 11 CR loci found in B. rapa, we identified CRb in Chinese cabbage cultivar 'CR Shinki' as a single dominant gene for resistance against Plasmodiophora brassicae pathotype group 3, against which the stacking of Crr1 and Crr2 loci was not effective. However, the precise location and pathotype specificity of CRb have been controversial, because CRa and Rcr1 also map near this locus...
December 24, 2016: Molecular Genetics and Genomics: MGG
https://www.readbyqxmd.com/read/27874080/integrated-omics-study-of-lipid-droplets-from-plasmodiophora-brassicae
#4
Kai Bi, Zhangchao He, Zhixiao Gao, Ying Zhao, Yanping Fu, Jiasen Cheng, Jiatao Xie, Daohong Jiang, Tao Chen
Plasmodiophora brassicae causes clubroot disease in cruciferous. In this report, lipid droplets were observed in the resting spores of P. brassicae. 295 lipid droplet-associated proteins were identified and categorized into nine groups. Transcriptome analysis of these proteins during three different zoosporic stages revealed differences in gene expression pattern. GO enrichment analysis revealed that these proteins associated with lipid droplets were mainly linked to biosynthesis and metabolism. GC-MS analysis revealed that lipid droplets contain seven types of free fatty acids: saturated fatty acids C16:0 and C18:0, and unsaturated fatty acids C18:1Δ9, C18:1Δ11, C18:2, C20:4 and C20:5...
November 22, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27835985/hypoxia-response-in-arabidopsis-roots-infected-by-plasmodiophora-brassicae-supports-the-development-of-clubroot
#5
Antoine Gravot, Gautier Richard, Tanguy Lime, Séverine Lemarié, Mélanie Jubault, Christine Lariagon, Jocelyne Lemoine, Jorge Vicente, Alexandre Robert-Seilaniantz, Michael J Holdsworth, Maria J Manzanares-Dauleux
BACKGROUND: The induction of alcohol fermentation in roots is a plant adaptive response to flooding stress and oxygen deprivation. Available transcriptomic data suggest that fermentation-related genes are also frequently induced in roots infected with gall forming pathogens, but the biological significance of this induction is unclear. In this study, we addressed the role of hypoxia responses in Arabidopsis roots during infection by the clubroot agent Plasmodiophora brassicae. RESULTS: The hypoxia-related gene markers PYRUVATE DECARBOXYLASE 1 (PDC1), PYRUVATE DECARBOXYLASE 2 (PDC2) and ALCOHOL DEHYDROGENASE 1 (ADH1) were induced during secondary infection by two isolates of P...
November 11, 2016: BMC Plant Biology
https://www.readbyqxmd.com/read/27750174/the-large-subunit-rdna-sequence-of-plasmodiophora-brassicae-does-not-contain-intra-species-polymorphism
#6
Arne Schwelm, Cédric Berney, Christina Dixelius, David Bass, Sigrid Neuhauser
Clubroot disease caused by Plasmodiophora brassicae is one of the most important diseases of cultivated brassicas. P. brassicae occurs in pathotypes which differ in the aggressiveness towards their Brassica host plants. To date no DNA based method to distinguish these pathotypes has been described. In 2011 polymorphism within the 28S rDNA of P. brassicae was reported which potentially could allow to distinguish pathotypes without the need of time-consuming bioassays. However, isolates of P. brassicae from around the world analysed in this study do not show polymorphism in their LSU rDNA sequences...
December 2016: Protist
https://www.readbyqxmd.com/read/27746804/a-genome-wide-association-study-reveals-new-loci-for-resistance-to-clubroot-disease-in-brassica-napus
#7
Lixia Li, Yujie Luo, Biyun Chen, Kun Xu, Fugui Zhang, Hao Li, Qian Huang, Xin Xiao, Tianyao Zhang, Jihong Hu, Feng Li, Xiaoming Wu
Rapeseed (Brassica napus L.) is one of the most important oil crops in the world. However, the yield and quality of rapeseed were largely decreased by clubroot (Plasmodiophora brassicae Woronin). Therefore, it is of great importance for screening more resistant germplasms or genes and improving the resistance to P. brassicae in rapeseed breeding. In this study, a massive resistant identification for a natural global population was conducted in two environments with race/pathotype 4 of P. brassicae which was the most predominant in China, and a wide range of phenotypic variation was found in the population...
2016: Frontiers in Plant Science
https://www.readbyqxmd.com/read/27721692/pathotype-classification-of-plasmodiophora-brassicae-isolates-using-clubroot-resistant-cultivars-of-chinese-cabbage
#8
Hun Kim, Eun Ju Jo, Yong Ho Choi, Kyoung Soo Jang, Gyung Ja Choi
Clubroot disease caused by Plasmodiophora brassicae is one of the most serious diseases in Brassica crops worldwide. In this study, the pathotypes of 12 Korean P. brassicae field isolates were determined using various Chinese cabbage including 22 commercial cultivars from Korea, China, and Japan, and 15 inbred lines. All P. brassicae isolates exhibited the typical clubroot disease on non-clubroot resistant cultivar, indicating that the isolates were highly pathogenic. According to the reactions on the Williams' hosts, the 12 field isolates were initially classified into five races...
October 2016: Plant Pathology Journal
https://www.readbyqxmd.com/read/27679580/arabidopsis-mutant-bik1-exhibits-strong-resistance-to-plasmodiophora-brassicae
#9
Tao Chen, Kai Bi, Zhangchao He, Zhixiao Gao, Ying Zhao, Yanping Fu, Jiasen Cheng, Jiatao Xie, Daohong Jiang
Botrytis-induced kinase1 (BIK1), a receptor-like cytoplasmic kinase, plays an important role in resistance against pathogens and insects in Arabidopsis thaliana. However, it remains unknown whether BIK1 functions against Plasmodiophora brassicae, an obligate biotrophic protist that attacks cruciferous plants and induces gall formation on roots. Here, we investigated the potential roles of receptors FLS2, BAK1, and BIK1 in the infection of P. brassicae cruciferous plants. Wild-type plants, fls2, and bak1 mutants showed typical symptom on roots, and the galls were filled with large quantities of resting spores, while bik1 mutant plants exhibited strong resistance to P...
2016: Frontiers in Physiology
https://www.readbyqxmd.com/read/27549861/genetics-and-molecular-mapping-of-resistance-to-plasmodiophora-brassicae-pathotypes-2-3-5-6-and-8-in-rutabaga-brassica-napus-var-napobrassica
#10
Muhammad Jakir Hasan, Habibur Rahman
Clubroot disease, caused by Plasmodiophora brassicae, is a threat to the production of Brassica crops including oilseed B. napus. In Canada, several pathotypes of this pathogen, such as pathotypes 2, 3, 5, 6, and 8, were identified, and resistance to these pathotypes was found in a rutabaga (B. napus var. napobrassica) genotype. In this paper, we report the genetic basis and molecular mapping of this resistance by use of F2, backcross (BC1), and doubled haploid (DH) populations generated from crossing of this rutabaga line to a susceptible spring B...
October 2016: Genome Génome / Conseil National de Recherches Canada
https://www.readbyqxmd.com/read/27525940/discovery-of-clubroot-resistant-genes-in-brassica-napus-by-transcriptome-sequencing
#11
S W Chen, T Liu, Y Gao, C Zhang, S D Peng, M B Bai, S J Li, L Xu, X Y Zhou, L B Lin
Clubroot significantly affects plants of the Brassicaceae family and is one of the main diseases causing serious losses in B. napus yield. Few studies have investigated the clubroot-resistance mechanism in B. napus. Identification of clubroot-resistant genes may be used in clubroot-resistant breeding, as well as to elucidate the molecular mechanism behind B. napus clubroot-resistance. We used three B. napus transcriptome samples to construct a transcriptome sequencing library by using Illumina HiSeq™ 2000 sequencing and bioinformatic analysis...
August 12, 2016: Genetics and Molecular Research: GMR
https://www.readbyqxmd.com/read/27462338/shotgun-label-free-proteomic-analysis-of-clubroot-plasmodiophora-brassicae-resistance-conferred-by-the-gene-rcr1-in-brassica-rapa
#12
Tao Song, Mingguang Chu, Rachid Lahlali, Fengqun Yu, Gary Peng
Clubroot, caused by the plasmodiophorid pathogen Plasmodiophora brassicae, is one of the most serious diseases on Brassica crops worldwide and a major threat to canola production in western Canada. Host resistance is the key strategy for clubroot management on canola. Several clubroot resistance (CR) genes have been identified, but the mechanisms associated with these CR genes are poorly understood. In the current study, a label-free shotgun proteomic approach was used to profile and compare the proteomes of Brassica rapa carrying and not carrying the CR gene Rcr1 in response to P...
2016: Frontiers in Plant Science
https://www.readbyqxmd.com/read/27171821/expression-of-salicylic-acid-related-genes-in-brassica-oleracea-var-capitata-during-plasmodiophora-brassicae-infection
#13
Ranjith Kumar Manoharan, Ashokraj Shanmugam, Indeok Hwang, Jong-In Park, Ill-Sup Nou
Brassica oleracea var. capitata (cabbage) is an important vegetable crop in Asian countries such as Korea, China, and Japan. Cabbage production is severely affected by clubroot disease caused by the soil-borne plant pathogen Plasmodiophora brassicae. During clubroot development, methyl salicylate (MeSA) is biosynthesized from salicylic acid (SA) by methyltransferase. In addition, methyl salicylate esterase (MES) plays a major role in the conversion of MeSA back into free SA. The interrelationship between MES and methytransferases during clubroot development has not been fully explored...
June 2016: Genome Génome / Conseil National de Recherches Canada
https://www.readbyqxmd.com/read/27135241/quantification-of-plasmodiophora-brassicae-using-a-dna-based-soil-test-facilitates-sustainable-oilseed-rape-production
#14
Ann-Charlotte Wallenhammar, Albin Gunnarson, Fredrik Hansson, Anders Jonsson
Outbreaks of clubroot disease caused by the soil-borne obligate parasite Plasmodiophora brassicae are common in oilseed rape (OSR) in Sweden. A DNA-based soil testing service that identifies fields where P. brassicae poses a significant risk of clubroot infection is now commercially available. It was applied here in field surveys to monitor the prevalence of P. brassicae DNA in field soils intended for winter OSR production and winter OSR field experiments. In 2013 in Scania, prior to planting, P. brassicae DNA was detected in 60% of 45 fields on 10 of 18 farms...
2016: Plants (Basel, Switzerland)
https://www.readbyqxmd.com/read/27078023/identification-of-genome-wide-variants-and-discovery-of-variants-associated-with-brassica-rapa-clubroot-resistance-gene-rcr1-through-bulked-segregant-rna-sequencing
#15
Fengqun Yu, Xingguo Zhang, Zhen Huang, Mingguang Chu, Tao Song, Kevin C Falk, Abhinandan Deora, Qilin Chen, Yan Zhang, Linda McGregor, Bruce D Gossen, Mary Ruth McDonald, Gary Peng
Clubroot, caused by Plasmodiophora brassicae, is an important disease on Brassica species worldwide. A clubroot resistance gene, Rcr1, with efficacy against pathotype 3 of P. brassicae, was previously mapped to chromosome A03 of B. rapa in pak choy cultivar "Flower Nabana". In the current study, resistance to pathotypes 2, 5 and 6 was shown to be associated with Rcr1 region on chromosome A03. Bulked segregant RNA sequencing was performed and short read sequences were assembled into 10 chromosomes of the B. rapa reference genome v1...
2016: PloS One
https://www.readbyqxmd.com/read/27036196/the-compact-genome-of-the-plant-pathogen-plasmodiophora-brassicae-is-adapted-to-intracellular-interactions-with-host-brassica-spp
#16
Stephen A Rolfe, Stephen E Strelkov, Matthew G Links, Wayne E Clarke, Stephen J Robinson, Mohammad Djavaheri, Robert Malinowski, Parham Haddadi, Sateesh Kagale, Isobel A P Parkin, Ali Taheri, M Hossein Borhan
BACKGROUND: The protist Plasmodiophora brassicae is a soil-borne pathogen of cruciferous species and the causal agent of clubroot disease of Brassicas including agriculturally important crops such as canola/rapeseed (Brassica napus). P. brassicae has remained an enigmatic plant pathogen and is a rare example of an obligate biotroph that resides entirely inside the host plant cell. The pathogen is the cause of severe yield losses and can render infested fields unsuitable for Brassica crop growth due to the persistence of resting spores in the soil for up to 20 years...
March 31, 2016: BMC Genomics
https://www.readbyqxmd.com/read/26862564/genetic-characterization-of-inbred-lines-of-chinese-cabbage-by-dna-markers-towards-the-application-of-dna-markers-to-breeding-of-f1-hybrid-cultivars
#17
Kazutaka Kawamura, Takahiro Kawanabe, Motoki Shimizu, Keiichi Okazaki, Makoto Kaji, Elizabeth S Dennis, Kenji Osabe, Ryo Fujimoto
Chinese cabbage (Brassica rapa L. var. pekinensis) is an important vegetable in Asia, and most Japanese commercial cultivars of Chinese cabbage use an F1 hybrid seed production system. Self-incompatibility is successfully used for the production of F1 hybrid seeds in B. rapa vegetables to avoid contamination by non-hybrid seeds, and the strength of self-incompatibility is important for harvesting a highly pure F1 seeds. Prediction of agronomically important traits such as disease resistance based on DNA markers is useful...
March 2016: Data in Brief
https://www.readbyqxmd.com/read/26622061/genotyping-by-sequencing-map-permits-identification-of-clubroot-resistance-qtls-and-revision-of-the-reference-genome-assembly-in-cabbage-brassica-oleracea-l
#18
Jonghoon Lee, Nur Kholilatul Izzah, Beom-Soon Choi, Ho Jun Joh, Sang-Choon Lee, Sampath Perumal, Joodeok Seo, Kyounggu Ahn, Eun Ju Jo, Gyung Ja Choi, Ill-Sup Nou, Yeisoo Yu, Tae-Jin Yang
Clubroot is a devastating disease caused by Plasmodiophora brassicae and results in severe losses of yield and quality in Brassica crops. Many clubroot resistance genes and markers are available in Brassica rapa but less is known in Brassica oleracea. Here, we applied the genotyping-by-sequencing (GBS) technique to construct a high-resolution genetic map and identify clubroot resistance (CR) genes. A total of 43,821 SNPs were identified using GBS data for two parental lines, one resistant and one susceptible lines to clubroot, and 18,187 of them showed >5× coverage in the GBS data...
February 2016: DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes
https://www.readbyqxmd.com/read/26363358/both-the-jasmonic-acid-and-the-salicylic-acid-pathways-contribute-to-resistance-to-the-biotrophic-clubroot-agent-plasmodiophora-brassicae-in-arabidopsis
#19
Séverine Lemarié, Alexandre Robert-Seilaniantz, Christine Lariagon, Jocelyne Lemoine, Nathalie Marnet, Mélanie Jubault, Maria J Manzanares-Dauleux, Antoine Gravot
The role of salicylic acid (SA) and jasmonic acid (JA) signaling in resistance to root pathogens has been poorly documented. We assessed the contribution of SA and JA to basal and partial resistance of Arabidopsis to the biotrophic clubroot agent Plasmodiophora brassicae. SA and JA levels as well as the expression of the SA-responsive genes PR2 and PR5 and the JA-responsive genes ARGAH2 and THI2.1 were monitored in infected roots of the accessions Col-0 (susceptible) and Bur-0 (partially resistant). SA signaling was activated in Bur-0 but not in Col-0...
November 2015: Plant & Cell Physiology
https://www.readbyqxmd.com/read/26257750/camalexin-contributes-to-the-partial-resistance-of-arabidopsis-thaliana-to-the-biotrophic-soilborne-protist-plasmodiophora-brassicae
#20
Séverine Lemarié, Alexandre Robert-Seilaniantz, Christine Lariagon, Jocelyne Lemoine, Nathalie Marnet, Anne Levrel, Mélanie Jubault, Maria J Manzanares-Dauleux, Antoine Gravot
Camalexin has been reported to play defensive functions against several pathogens in Arabidopsis. In this study, we investigated the possible role of camalexin accumulation in two Arabidopsis genotypes with different levels of basal resistance to the compatible eH strain of the clubroot agent Plasmodiophora brassicae. Camalexin biosynthesis was induced in infected roots of both Col-0 (susceptible) and Bur-0 (partially resistant) accessions during the secondary phase of infection. However, the level of accumulation was four-to-seven times higher in Bur-0 than Col-0...
2015: Frontiers in Plant Science
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