keyword
https://read.qxmd.com/read/38589927/hspa4-upregulation-induces-immune-evasion-via-alkbh5-cd58-axis-in-gastric-cancer
#1
JOURNAL ARTICLE
Daqin Suo, Xiaoling Gao, Qingyun Chen, Tingting Zeng, Jiarong Zhan, Guanghui Li, Yinli Zheng, Senlin Zhu, Jingping Yun, Xin-Yuan Guan, Yan Li
INTRODUCTION: Gastric cancer (GC) is one of the leading causes of cancer-related death worldwide. Recently, targeted therapies including PD1 (programmed cell death 1) antibodies have been used in advanced GC patients. However, identifying new biomarker for immunotherapy is still urgently needed. The objective of this study is to unveil the immune evasion mechanism of GC cells and identify new biomarkers for immune checkpoint blockade therapy in patients with GC. METHODS: Coimmunoprecipitation and meRIP were performed to investigate the mechanism of immune evasion of GC cells...
April 8, 2024: Journal of Experimental & Clinical Cancer Research: CR
https://read.qxmd.com/read/38476923/novel-underlying-genetic-markers-for-asthenozoospermia-due-to-abnormal-spermatogenesis-and-reproductive-organ-inflammation
#2
JOURNAL ARTICLE
Yaodong Zhang, Yun Peng, Yao Wang, Jian Xu, Hongli Yan
Asthenozoospermia, a male fertility disorder, has a complex and multifactorial etiology. Moreover, the effectiveness of different treatments for asthenozoospermia remains uncertain. Hence, by using bioinformatics techniques, the present study aimed to determine the underlying genetic markers and pathogenetic mechanisms associated with asthenozoospermia due to abnormal spermatogenesis and inflammation of the reproductive tract. GSE160749 dataset was downloaded from the Gene Expression Omnibus database, and the data were filtered to obtain 1336 differentially expressed genes (DEGs) associated with asthenozoospermia...
April 2024: Experimental and Therapeutic Medicine
https://read.qxmd.com/read/38322303/mechanisms-involved-in-therapeutic-effects-of-scutellaria-baicalensis-georgi-in-oral-squamous-cell-carcinoma-based-on-systems-biology-and-structural-bioinformatics-approaches
#3
JOURNAL ARTICLE
Zeynab Bayat, Tina Mazaheri, Homa Farhadifard, Amir Taherkhani
OBJECTIVE: Oral squamous cell carcinoma (OSCC) is the most frequent oral cancer, constituting more than 90% of all oral carcinomas. The 5-year survival rate of OSCC patients is not satisfactory, and therefore, there is an urgent need for new practical therapeutic approaches besides the current therapies to overcome OSCC. Scutellaria baicalensis Georgi (SBG) is a plant of the family Lamiaceae with several pharmaceutical properties such as antioxidant, anti-inflammatory, and anticancer effects...
2024: BioMed Research International
https://read.qxmd.com/read/38305786/unveiling-the-potential-of-hspa4-a-comprehensive-pan-cancer-analysis-of-hspa4-in-diagnosis-prognosis-and-immunotherapy
#4
JOURNAL ARTICLE
Junhao Yang, Xiaoxiao Wu, Jianhong You
With the global rise in cancer incidence and mortality rates, research on the topic has become increasingly urgent. Among the significant players in this field are heat shock proteins (HSPs), particularly HSPA4 from the HSP70 subfamily, which has recently garnered considerable interest for its role in cancer progression. However, despite numerous studies on HSPA4 in specific cancer types, a comprehensive analysis across all cancer types is lacking. This study employs various bioinformatics techniques to delve into the role of HSPA4 in pan-cancer...
January 31, 2024: Aging
https://read.qxmd.com/read/38292659/prognostic-and-immunological-roles-of-heat-shock-protein-a4-in-lung-adenocarcinoma
#5
JOURNAL ARTICLE
Xuan Wu, Shen-Ying Yang, Yi-Hua Zhang, Jin-Zhou Fang, Shuai Wang, Zhi-Wei Xu, Xiao-Ju Zhang
BACKGROUND: Heat shock protein A4 (HSPA4) belongs to molecular chaperone protein family which plays important roles within variable cellular activities, including cancer initiation and progression. However, the prognostic and immunological significance of HSPA4 in lung adenocarcinoma (LUAD) has not been revealed yet. AIM: To explore the prognostic and immunological roles of HSPA4 to identify a novel prognostic biomarker and therapeutic target for LUAD. METHODS: We assessed the prognostic and immunological significance of HSPA4 in LUAD using data from The Cancer Genome Atlas database...
January 24, 2024: World Journal of Clinical Oncology
https://read.qxmd.com/read/38125299/panoptosis-signaling-enables-broad-immune-response-in-psoriasis-from-pathogenesis-to-new-therapeutic-strategies
#6
JOURNAL ARTICLE
Xi-Min Hu, Shengyuan Zheng, Qi Zhang, Xinxing Wan, Ji Li, Rui Mao, Ronghua Yang, Kun Xiong
BACKGROUND: Accumulating evidence suggests that regulated cell death, such as pyroptosis, apoptosis, and necroptosis, is deeply involved in the pathogenesis of psoriasis. As a newly recognized form of systematic cell death, PANoptosis is involved in a variety of inflammatory disorders through amplifying inflammatory and immune cascades, but its role in psoriasis remains elusive. OBJECTIVES: To reveal the role of PANoptosis in psoriasis for a potential therapeutic strategy...
December 2024: Computational and Structural Biotechnology Journal
https://read.qxmd.com/read/38073191/integrated-analysis-of-differentially-expressed-genes-implicated-in-ovarian-cancer-progression
#7
JOURNAL ARTICLE
Bahriye Gür, Nurhan Külcü Sarıkaya, Deniz Sünnetçi Akkoyunlu
OBJECTIVE: Ovarian cancer (OC) is a common gynecological malignancy associated with high morbidity and generally poor prognosis despite treatment. The aim of this study was to understand the influence of gene expression differences and pathways in OC development and progression. MATERIALS AND METHODS: One hundred and thirty-three OC samples and 34 normal ovarian tissues were included in the study from the Gene Expression Omnibus database. GeneSpring Software was used to obtain differentially expressed genes (DEGs) in all stages comparing tumor and normaltissue...
December 8, 2023: Turkish Journal of Obstetrics and Gynecology
https://read.qxmd.com/read/38001817/influence-of-mild-chronic-stress-and-social-isolation-on-acute-ozone-induced-alterations-in-stress-biomarkers-and-brain-region-specific-gene-expression-in-male-wistar-kyoto-rats
#8
JOURNAL ARTICLE
Matthew C Valdez, Danielle L Freeborn, Joseph M Valdez, Andres R Henriquez, Samantha J Snow, Thomas W Jackson, Prasada Rao S Kodavanti, Urmila P Kodavanti
Individuals with psychosocial stress often experience an exaggerated response to air pollutants. Ozone (O3 ) exposure has been associated with the activation of the neuroendocrine stress-response system. We hypothesized that preexistent mild chronic stress plus social isolation (CS), or social isolation (SI) alone, would exacerbate the acute effects of O3 exposure on the circulating adrenal-derived stress hormones, and the expression of the genes regulating glucocorticoid stress signaling via an altered stress adaptation in a brain-region-specific manner...
November 3, 2023: Antioxidants (Basel, Switzerland)
https://read.qxmd.com/read/37942135/analysis-of-damage-associated-molecular-patterns-in-amyotrophic-lateral-sclerosis-based-on-scrna-seq-and-bulk-rna-seq-data
#9
JOURNAL ARTICLE
Yue Shi, Ruixia Zhu
BACKGROUND: Amyotrophic Lateral Sclerosis (ALS) is a devastating neurodegenerative disorder characterized by the progressive loss of motor neurons. Despite extensive research, the exact etiology of ALS remains elusive. Emerging evidence highlights the critical role of the immune system in ALS pathogenesis and progression. Damage-Associated Molecular Patterns (DAMPs) are endogenous molecules released by stressed or damaged cells, acting as danger signals and activating immune responses...
2023: Frontiers in Neuroscience
https://read.qxmd.com/read/37761919/hsp70-gene-family-in-sebastiscus-marmoratus-the-genome-wide-identification-and-transcriptome-analysis-under-thermal-stress
#10
JOURNAL ARTICLE
Xiaolu Han, Shihuai Jin, Chenyan Shou, Zhiqiang Han
Heat shock protein 70 kDa (Hsp70) is a highly conserved heat stress protein that is important in biotic processes and responses to abiotic stress. Hsp70 genes may be important in Sebastiscus marmoratus, for it is a kind of nearshore reef fish, and habitat temperature change is more drastic during development. However, genome-wide identification and expression analysis in the Hsp70 gene family of S. marmoratus are still lacking. Here, a total of 15 Hsp70 genes in the genome of S. marmoratus are identified, and their expression patterns were investigated using transcriptomic data from thermal stress experiments...
September 9, 2023: Genes
https://read.qxmd.com/read/37653627/integrating-bioinformatics-and-drug-sensitivity-analyses-to-identify-molecular-characteristics-associated-with-targeting-necroptosis-in-breast-cancer-and-their-clinical-prognostic-significance
#11
JOURNAL ARTICLE
Chang Zheng, Hanbin Guo, Yongpan Mo, Guowen Liu
BACKGROUND: Breast cancer accounts for over 1.8 million new cases worldwide annually, and prompt diagnosis and treatment are imperative to prevent mortality. Necroptosis, a form of programmed cell death, is thought to be a critical pathway for cancer cell apoptosis, yet, its relationship with breast cancer progression and molecular mechanisms remains largely unexplored. OBJECTIVES: Our study aims to investigate the molecular characteristics and clinical prognostic value of necroptosis-related genes in breast cancer using a comprehensive approach that involves integrated bioinformatics analysis along with drug sensitivity assessment...
August 31, 2023: Recent Patents on Anti-cancer Drug Discovery
https://read.qxmd.com/read/37565223/retracted-inhibition-of-dnajc12-inhibited-tumorigenesis-of-rectal-cancer-via-downregulating-hspa4-expression
#12
Evidence-Based Complementary And Alternative Medicine
[This retracts the article DOI: 10.1155/2022/1027895.].
2023: Evidence-based Complementary and Alternative Medicine: ECAM
https://read.qxmd.com/read/37488801/-stip1-correlates-with-tumor-immune-infiltration-and-prognosis-as-a-potential-immunotherapy-target-a-pan-cancer-bioinformatics-analysis
#13
JOURNAL ARTICLE
S Guan, Z Shen, M Lin, H Deng, Y Fang
OBJECTIVE: To investigate the correlation of stress-inducible phosphoprotein 1 (STIP1) expression level with prognosis of different cancers and its potential role in immunotherapy. METHODS: TCGA, TARGET and GTEx databases were used for bioinformatic analysis of STIP1 expression level and its prognostic value in different cancers. We also detected STIP1 expression immunohistochemically in 10 pairs of colorectal cancer and adjacent tissues. We further analyzed the correlation of STIP1 expression level with tumor mutational burden, microsatellite instability, immune cell infiltration, immune regulators and outcomes of different cancers...
July 20, 2023: Nan Fang Yi Ke da Xue Xue Bao, Journal of Southern Medical University
https://read.qxmd.com/read/37370521/evaluation-of-the-genetic-diversity-population-structure-and-selection-signatures-of-three-native-chinese-pig-populations
#14
JOURNAL ARTICLE
Ziqi Zhong, Ziyi Wang, Xinfeng Xie, Shuaishuai Tian, Feifan Wang, Qishan Wang, Shiheng Ni, Yuchun Pan, Qian Xiao
Indigenous pig populations in Hainan Province live in tropical climate conditions and a relatively closed geographical environment, which has contributed to the formation of some excellent characteristics, such as heat tolerance, strong disease resistance and excellent meat quality. Over the past few decades, the number of these pig populations has decreased sharply, largely due to a decrease in growth rate and poor lean meat percentage. For effective conservation of these genetic resources (such as heat tolerance, meat quality and disease resistance), the whole-genome sequencing data of 78 individuals from 3 native Chinese pig populations, including Wuzhishan (WZS), Tunchang (TC) and Dingan (DA), were obtained using a 150 bp paired-end platform, and 25 individuals from two foreign breeds, including Landrace (LR) and Large White (LW), were downloaded from a public database...
June 16, 2023: Animals: An Open Access Journal From MDPI
https://read.qxmd.com/read/37339521/hspa4-regulated-glioma-progression-via-activation-of-akt-signaling-pathway
#15
JOURNAL ARTICLE
Xi Yuan, Xiangdong Sun, Bin Zhou, Shuang Zhao, Yikun Li, Haolang Ming
Glioma is still an incurable disease with high invasiveness. Heat shock 70 kDa protein 4 (HSPA4) is a member of the HSP110 family, and is associated with the development and progression of various cancers. In the current study, we assessed the expression of HSPA4 in clinical samples, and found that HSPA4 was up-regulated in glioma tissues and correlated with tumor recurrence and grade. Survival analyses demonstrated that glioma patients with high HSPA4 expression had lower overall survival and disease-free survival times...
June 20, 2023: Biochemistry and Cell Biology
https://read.qxmd.com/read/37298337/apoptosis-genes-as-a-key-to-identification-of-inverse-comorbidity-of-huntington-s-disease-and-cancer
#16
JOURNAL ARTICLE
Elena Yu Bragina, Densema E Gomboeva, Olga V Saik, Vladimir A Ivanisenko, Maxim B Freidin, Maria S Nazarenko, Valery P Puzyrev
Cancer and neurodegenerative disorders present overwhelming challenges for healthcare worldwide. Epidemiological studies showed a decrease in cancer rates in patients with neurodegenerative disorders, including the Huntington disease (HD). Apoptosis is one of the most important processes for both cancer and neurodegeneration. We suggest that genes closely connected with apoptosis and associated with HD may affect carcinogenesis. We applied reconstruction and analysis of gene networks associated with HD and apoptosis and identified potentially important genes for inverse comorbidity of cancer and HD...
May 27, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/37203095/distinct-gene-expression-profiles-underlie-morphological-and-etiological-differences-in-pediatric-cataracts
#17
JOURNAL ARTICLE
Shaika Shanbagh, Jyoti Matalia, Ramaraj Kannan, Rohit Shetty, Pratibha Panmand, Sumitha O Muthu, Shyam S Chaurasia, Vrushali Deshpande, Shomi S Bhattacharya, Abilash V Gopalakrishnan, Arkasubhra Ghosh
PURPOSE: Pediatric cataract is a major cause of preventable childhood blindness worldwide. Although genetic mutations or infections have been described in patients, the mechanistic basis of human cataract development remains poorly understood. Therefore, gene expression of structural, developmental, profibrotic, and transcription factors in phenotypically and etiologically distinct forms of pediatric cataracts were evaluated. METHODS: This cross-sectional study included 89 pediatric cataract subjects subtyped into 1) prenatal infectious (cytomegalovirus, rubella, and combined cytomegalovirus with rubella infection), 2) prenatal non-infectious, 3) posterior capsular anomalies, 4) postnatal, 5) traumatic, and 6) secondary, and compared to clear, non-cataractous material of eyes with the subluxated lenses...
May 2023: Indian Journal of Ophthalmology
https://read.qxmd.com/read/37201074/identification-of-glutamyl-prolyl-trna-synthetase-as-a-new-therapeutic-target-in-hepatocellular-carcinoma-via-a-novel-bioinformatic-approach
#18
JOURNAL ARTICLE
Jinyong Shu, Pan Luo, Guifeng Zhang, Yi Gao
BACKGROUND: Hepatocellular carcinoma (HCC) has a high incidence, and current treatments are ineffective. We aimed to explore potential diagnostic and prognostic biomarkers for HCC by conducting bioinformatics analysis on genomic and proteomic data. METHODS: Genome and proteome data were downloaded from The Cancer Genome Atlas (TCGA) and ProteomeXchange databases, respectively. Differentially expressed genes was determined using limma package. Functional enrichment analysis was conducted by Database for Annotation, Visualization, and Integrated Discovery (DAVID)...
April 29, 2023: Journal of Gastrointestinal Oncology
https://read.qxmd.com/read/37147328/analysis-of-ppi-networks-of-transcriptomic-expression-identifies-hub-genes-associated-with-newcastle-disease-virus-persistent-infection-in-bladder-cancer
#19
JOURNAL ARTICLE
Umar Ahmad, Syahril Abdullah, De Ming Chau, Suet Lin Chia, Khatijah Yusoff, Soon Choy Chan, Teng Aik Ong, Azad Hassan Razack, Abhi Veerakumarasivam
Bladder cancer cells can acquire persistent infection of oncolytic Newcastle disease virus (NDV) but the molecular mechanism(s) remain unelucidated. This poses a major barrier to the effective clinical translation of oncolytic NDV virotherapy of cancers. To improve our understanding of the molecular mechanism(s) associated with the development of NDV persistent infection in bladder cancer, we used mRNA expression profiles of persistently infected bladder cancer cells to construct PPI networks. Based on paths and modules in the PPI network, the bridges were found mainly in the upregulated mRNA-pathways of p53 signalling, ECM-receptor interaction, and TGF-beta signalling and downregulated mRNA-pathways of antigen processing and presentation, protein processing in endoplasmic reticulum, completement and coagulation cascades in persistent TCCSUPPi cells...
May 5, 2023: Scientific Reports
https://read.qxmd.com/read/37086043/pyroptosis-related-gene-signature-elicits-immune-response-in-rosacea
#20
JOURNAL ARTICLE
Xi-Min Hu, Sheng-Yuan Zheng, Rui Mao, Qi Zhang, Xin-Xing Wan, Yi-Ya Zhang, Ji Li, Rong-Hua Yang, Kun Xiong
Rosacea is a complex chronic inflammatory skin disorder with high morbidity. Pyroptosis is known as a regulated inflammatory cell death. While its association with immune response to various inflammatory disorders is well established, little is known about its functional relevance of rosacea. So, we aimed to explore and enrich the pathogenesis involved in pyroptosis-related rosacea aggravations. In this study, we evaluated the pyroptosis-related patterns of rosacea by consensus clustering analysis of 45 ferroptosis-related genes (FRGs), with multiple immune cell infiltration analysis to identify the pyroptosis-mediated immune response in rosacea using GSE65914 dataset...
April 22, 2023: Experimental Dermatology
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