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https://www.readbyqxmd.com/read/28323849/bis-sulfosuccinimidyl-suberate-bs3-crosslinking-analysis-of-the-behavior-of-amyloid-%C3%AE-peptide-in-solution-and-in-phospholipid-membranes
#1
Jing-Ming Shi, Jie Pei, En-Qi Liu, Lin Zhang
The structure and state of amyloid-β peptide (Aβ) oligomers often need to be checked by reliable experimental methods. Electrophoresis is a commonly applied measurement method. However, due to the presence of detergents, oligomers are easily broken during electrophoresis, which makes it very hard to accurately assess Aβ aggregate states. In the current study, bis(sulfosuccinimidyl) suberate (BS3) was used to cross-link Aβ1-42 oligomers prior to electrophoresis. When compared to a previously reported Aβ cross-linking agent, glutaraldehyde, it was quite apparent that BS3 is more suitable for detecting intra-membrane Aβ oligomers and extra-membrane Aβ oligomers states...
2017: PloS One
https://www.readbyqxmd.com/read/28298444/scffbxo17-e3-ligase-modulates-inflammation-by-regulating-proteasomal-degradation-of-glycogen-synthase-kinase-3%C3%AE-in-lung-epithelia
#2
Tomeka Suber, Jianxin Wei, Anastasia M Jacko, Ina Nikolli, Yutong Zhao, Jing Zhao, Rama K Mallampalli
Glycogen synthase kinase-3β (GSK3β) has diverse biological roles including effects on cellular differentiation, migration, and inflammation. GSK3β phosphorylates proteins to generate phosphodegrons necessary for recognition by Skip-1/Cullin-1/F-box (SCF) E3 ubiquitin ligases leading to subsequent proteasomal degradation of these substrates. However, little is known regarding how GSK3β protein stability itself is regulated and how its stability may influence inflammation. Here we show that GSK3β is degraded by the ubiquitin-proteasome pathway in murine lung epithelial (MLE) cells through lysine 183 as an acceptor site for K48 polyubiquitination...
March 15, 2017: Journal of Biological Chemistry
https://www.readbyqxmd.com/read/28268127/spectrophotometric-method-for-the-quantitative-assay-of-n-hydroxysulfosuccinimide-esters-including-extinction-coefficients-and-reaction-kinetics
#3
Rivo Presentini
A quantitative spectrophotometric method has been developed for the analysis of N-hydroxysulfosuccinimide (sulfo-NHS), a chromophore with a maximum absorbance at 268 nm. The extinction coefficients were determined between pH 6.0 and 8.0 and found to vary in a nonlinear manner. This spectrophotometric profile is not present in its esters which however release an equimolar amount of sulfo-NHS when they react with nucleophilic groups or hydrolyze in aqueous solution. This fact facilitates the determination in solution of the concentration and purity of bis(sulfosuccinimidyl) suberate (BS3) used as a model, as well as the examination of hydrolysis and aminolysis half-lives in different reaction conditions, these parameters being valuable in optimization of the use of the active esters...
March 6, 2017: Analytical Biochemistry
https://www.readbyqxmd.com/read/28238658/role-of-lotr1-in-nutrient-transport-through-organization-of-spatial-distribution-of-root-endodermal-barriers
#4
Baohai Li, Takehiro Kamiya, Lothar Kalmbach, Mutsumi Yamagami, Katsushi Yamaguchi, Shuji Shigenobu, Shinichiro Sawa, John M C Danku, David E Salt, Niko Geldner, Toru Fujiwara
The formation of Casparian strips and suberin lamellae at the endodermis limits the free diffusion of nutrients and harmful substances via the apoplastic space between the soil solution and the stele in roots [1-3]. Casparian strips are ring-like lignin polymers deposited in the middle of anticlinal cell walls between endodermal cells and fill the gap between them [4-6]. Suberin lamellae are glycerolipid polymers covering the endodermal cells and likely function as a barrier to limit transmembrane movement of apoplastic solutes into the endodermal cells [7, 8]...
March 6, 2017: Current Biology: CB
https://www.readbyqxmd.com/read/28164319/root-cortical-senescence-decreases-root-respiration-nutrient-content-and-radial-water-and-nutrient-transport-in-barley
#5
Hannah M Schneider, Tobias Wojciechowski, Johannes A Postma, Kathleen M Brown, Andreas Lücke, Viktoria Zeisler, Lukas Schreiber, Jonathan P Lynch
The functional implications of root cortical senescence (RCS) are poorly understood. We tested the hypotheses that RCS in barley: (1) reduces the respiration and nutrient content of root tissue; (2) decreases radial water and nutrient transport; (3) is accompanied by increased suberization to protect the stele. Genetic variation for RCS exists between modern germplasm and landraces. Nitrogen and phosphorus deficiency increased the rate of RCS. Maximal RCS, defined as the disappearance of the entire root cortex, reduced root nitrogen content by 66%, phosphorus content by 63%, and respiration by 87% compared to root segments with no RCS...
February 6, 2017: Plant, Cell & Environment
https://www.readbyqxmd.com/read/28149303/impact-of-leaf-traits-on-temporal-dynamics-of-transpired-oxygen-isotope-signatures-and-its-impact-on-atmospheric-vapor
#6
Maren Dubbert, Angelika Kübert, Christiane Werner
Oxygen isotope signatures of transpiration (δ E ) are powerful tracers of water movement from plant to global scale. However, a mechanistic understanding of how leaf morphological/physiological traits effect δ E is missing. A laser spectrometer was coupled to a leaf-level gas-exchange system to measure fluxes and isotopic signatures of plant transpiration under controlled conditions in seven distinct species (Fagus sylvatica, Pinus sylvestris, Acacia longifolia, Quercus suber, Coffea arabica, Plantago lanceolata, Oxalis triangularis)...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28133655/kinetics-mechanisms-and-ionic-liquids-in-the-uptake-of-n-butylamine-onto-low-molecular-weight-dicarboxylic-acids
#7
Michelle C Fairhurst, Michael J Ezell, Carla Kidd, Pascale S J Lakey, Manabu Shiraiwa, Barbara J Finlayson-Pitts
Atmospheric particles adversely affect visibility, health, and climate, yet the kinetics and mechanisms of particle formation and growth are poorly understood. Multiphase reactions between amines and dicarboxylic acids (diacids) have been suggested to contribute. In this study, the reactions of n-butylamine (BA) with solid C3-C8 diacids were studied at 296 ± 1 K using a Knudsen cell interfaced to a quadrupole mass spectrometer. Uptake coefficients for amines on the diacids with known geometric surface areas were measured at initial amine concentrations from (3-50) × 10(11) cm(-3)...
January 30, 2017: Physical Chemistry Chemical Physics: PCCP
https://www.readbyqxmd.com/read/28065927/the-composite-water-and-solute-transport-of-barley-hordeum-vulgare-roots-effect-of-suberized-barriers
#8
Kosala Ranathunge, Yangmin X Kim, Friedrich Wassmann, Tino Kreszies, Viktoria Zeisler, Lukas Schreiber
BACKGROUND AND AIMS: Roots have complex anatomical structures, and certain localized cell layers develop suberized apoplastic barriers. The size and tightness of these barriers depend on the growth conditions and on the age of the root. Such complex anatomical structures result in a composite water and solute transport in roots. METHODS: Development of apoplastic barriers along barley seminal roots was detected using various staining methods, and the suberin amounts in the apical and basal zones were analysed using gas chromatography-mass spectometry (GC-MS)...
January 8, 2017: Annals of Botany
https://www.readbyqxmd.com/read/28063300/a-psma-targeted-theranostic-agent-for-photodynamic-therapy
#9
Ying Chen, Samit Chatterjee, Ala Lisok, Il Minn, Mrudula Pullambhatla, Bryan Wharram, Yuchuan Wang, Jiefu Jin, Zaver M Bhujwalla, Sridhar Nimmagadda, Ronnie C Mease, Martin G Pomper
Prostate-specific membrane antigen (PSMA) is over-expressed in the epithelium of prostate cancer and in the neovasculature of many non-prostate solid tumors. PSMA has been increasingly used as a target for cancer imaging and therapy. Here we describe a low-molecular-weight theranostic photosensitizer, YC-9, for PSMA-targeted optical imaging and photodynamic therapy (PDT). YC-9 was synthesized by conjugating IRDye700DX N-hydroxysuccinimide (NHS) ester with a PSMA targeting Lys-Glu urea through a lysine-suberate linker in suitable yield...
February 2017: Journal of Photochemistry and Photobiology. B, Biology
https://www.readbyqxmd.com/read/28045988/differential-dna-methylation-patterns-are-related-to-phellogen-origin-and-quality-of-quercus-suber-cork
#10
Vera Inácio, Pedro M Barros, Augusta Costa, Cristóvão Roussado, Elsa Gonçalves, Rita Costa, José Graça, M Margarida Oliveira, Leonor Morais-Cecílio
DNA methylation is thought to influence Quercus suber cork quality, which is the main constraint for its economic valorisation. However, a deep knowledge of the cytosine methylation patterns disclosing the epigenetic variability of trees with different cork quality types is totally missing. This study investigates the hypothesis that variations in DNA methylation contribute to differences in cork cellular characteristics directly related to original or traumatic phellogen activity. We used MSAPs (Methylation Sensitive Amplified Polymorphism) to assess DNA methylation patterns of cork and leaf tissues of Q...
2017: PloS One
https://www.readbyqxmd.com/read/28004575/whole-milk-increases-intestinal-angptl4-expression-and-excretion-of-fatty-acids-through-feces-and-urine
#11
Søren Drud Nielsen, Bashar Amer, Karoline Blaabjerg, Trine K Dalsgaard, Randi Jessen, Bjørn Petrat-Melin, Martin Krøyer Rasmussen, Hanne D Poulsen, Jette F Young
The angiopoietin-like 4 (ANGPLT4) protein is involved in lipid metabolism and is known to inhibit lipoprotein lipase in the bloodstream. We investigated the effect of milk on intestinal ANGPTL4 and the metabolic profile of growing pigs and the effect of free fatty acids (FFAs) on ANGPTL4 in ex vivo and in vitro assays. Feeding pigs whole milk increased intestinal ANGPTL4 mRNA and increased fecal excretion of long-chain FFA compared to the control group fed soybean oil (n = 9). Furthermore, FFAs (C4-C8) induced ANGPTL4 gene expression in porcine intestinal tissue mounted in Ussing chambers and ANGPTL4 protein secretion to both the apical and basolateral sides of intestinal Caco-2 cells on permeable membranes...
January 18, 2017: Journal of Agricultural and Food Chemistry
https://www.readbyqxmd.com/read/27988001/novel-cellulose-based-amorphous-solid-dispersions-enhance-quercetin-solution-concentrations-in-vitro
#12
Andrew D Gilley, Hale Cigdem Arca, Brittany L B Nichols, Laura I Mosquera-Giraldo, Lynne S Taylor, Kevin J Edgar, Andrew P Neilson
Quercetin (Q) is a bioactive flavonol with potential to benefit human health. However, Q bioavailability is relatively low, due to its poor aqueous solubility and extensive phase-II metabolism. Strategies to increase solution concentrations in the small intestinal lumen have the potential to substantially increase Q bioavailability, and by extension, efficacy. We aimed to achieve this by incorporating Q into amorphous solid dispersions (ASDs) with cellulose derivatives. Q was dispersed in matrices of cellulose esters including 6-carboxycellulose acetate butyrate (CCAB), hydroxypropylmethylcellulose acetate succinate (HPMCAS) and cellulose acetate suberate (CASub) to afford ASDs that provided stability against crystallization, and pH-triggered release...
February 10, 2017: Carbohydrate Polymers
https://www.readbyqxmd.com/read/27986844/the-apoplasmic-pathway-via-the-root-apex-and-lateral-roots-contributes-to-cd-hyperaccumulation-in-the-hyperaccumulator-sedum-alfredii
#13
Qi Tao, Radek Jupa, Jipeng Luo, Alexander Lux, Ján Kováč, Yue Wen, Yimei Zhou, Japenga Jan, Yongchao Liang, Tingqiang Li
Although the significance of apoplasmic barriers in roots with regards to the uptake of toxic elements is generally known, the contribution of apoplasmic bypasses (ABs) to cadmium (Cd) hyperaccumulation is little understood. Here, we employed a combination of stable isotopic tracer techniques, an ABs tracer, hydraulic measurements, suberin lamellae staining, metabolic inhibitors, and antitranspirants to investigate and quantify the impact of the ABs on translocation of Cd to the xylem in roots of a hyperaccumulating (H) ecotype and a non-hyperaccumulating (NH) ecotype of Sedum alfredii In the H ecotype, the Cd content in the xylem sap was proportional to hydrostatic pressure, which was attributed to pressure-driven flow via the ABs...
December 16, 2016: Journal of Experimental Botany
https://www.readbyqxmd.com/read/27974650/short-term-dynamics-of-evaporative-enrichment-of-xylem-water-in-woody-stems-implications-for-ecohydrology
#14
Paula Martín-Gómez, Luis Serrano, Juan Pedro Ferrio
In ecohydrology, it is generally assumed that xylem water reflects the water source used by plants. Several studies have reported isotopic enrichment within woody tissues, particularly during dormancy periods or after long periods of inactivity. However, little is known about the short-term dynamics of this process. Here we assessed the magnitude and dynamics of xylem isotopic enrichment in suberized twigs of pines and oaks. We performed a series of laboratory experiments, in which we monitored hourly changes in water content and isotopic composition under two contrasting scenarios of sap flow restriction...
December 14, 2016: Tree Physiology
https://www.readbyqxmd.com/read/27974649/the-influence-of-season-on-carbon-allocation-to-suberin-and-other-stem-components-of-cork-oak-saplings
#15
Pedro L Aguado, M Dolores Curt, Helena Pereira, Jesús Fernández
The growth pattern of cork oak (Quercus suber L.), an important component of South Mediterranean woodlands, is seasonal. Seasonality has been found for shoot, radial and cork ring growth as well as for carbon (C) photoassimilation, nutrients remobilization and water relations, among other physiological aspects. However, little is known about the seasonality of C allocation to cork oak chemical compounds, including suberin, a major component of cork. In order to achieve this goal, an isotopic tracer experiment was conducted using 18-month-old cork oaks so that the fate of C photoassimilated in different seasons could be traced into biochemical (main organic) stem components...
December 14, 2016: Tree Physiology
https://www.readbyqxmd.com/read/27935074/neurite-growth-could-be-impaired-by-etfdh-mutation-but-restored-by-mitochondrial-cofactors
#16
Wen-Chen Liang, Yen-Fong Lin, Ting-Yuan Liu, Shin-Cheng Chang, Bai-Hsiun Chen, Ichizo Nishino, Yuh-Jyh Jong
INTRODUCTION: c.250G>A (p.Ala84Thr) in ETFDH is the most common mutation that causes later-onset multiple acyl-coenzyme A dehydrogenase deficiency (MADD) in the southern Chinese population. No functional study has targeted this mutation. METHODS: Using cells expressing ETFDH-wild-type (WT) or ETFDH-mutant (p.Ala84Thr), reactive oxygen species (ROS) production and neurite length were analyzed, followed by pathomechanism exploration and drug screening. RESULTS: Increased ROS production and marked neurite shortening were observed in the cells expressing the ETFDH-mutant, compared with WT...
December 9, 2016: Muscle & Nerve
https://www.readbyqxmd.com/read/27918629/new-routes-for-plant-iron-mining
#17
REVIEW
Catherine Curie, Stéphane Mari
I. II. III. IV. References SUMMARY: Plant iron (Fe) uptake relies to a large extent on the capacity of cells to control and extract Fe pools safely conserved in extracytoplasmic environments such as the apoplast and vacuoles, at least as much as on the transport machinery nested in plasma membranes. Recent studies on root and embryo Fe nutrition support this assertion and show that the root Fe-deficiency response also includes the dynamic use of a large Fe reservoir bound to cell wall components in the root apoplast, secretion in the apoplast of phenolic compounds of the coumarin family, which solubilize Fe in calcareous soils, and inhibition of suberization of endodermal cells in order to allow apoplastic and transcellular radial transport of Fe...
December 5, 2016: New Phytologist
https://www.readbyqxmd.com/read/27864443/integrative-approaches-for-the-identification-and-localization-of-specialized-metabolites-in-tripterygium-roots
#18
B Markus Lange, Justin T Fischedick, Malte F Lange, Narayanan Srividya, Dunja Šamec, Brenton C Poirier
Members of the genus Tripterygium are known to contain an astonishing diversity of specialized metabolites. The lack of authentic standards has been an impediment to the rapid identification of such metabolites in extracts. We employed an approach that involves the searching of multiple, complementary chromatographic and spectroscopic data sets against the Spektraris database to speed up the metabolite identification process. Mass spectrometry-based imaging indicated a differential localization of triterpenoids to the periderm and sesquiterpene alkaloids to the cortex layer of Tripterygium roots...
January 2017: Plant Physiology
https://www.readbyqxmd.com/read/27856170/antifungal-activity-of-acetone-extracts-from-punica-granatum-l-quercus-suber-l-%C3%A2-and-vicia-faba-l
#19
S Akroum
Human and animal mycoses become more frequent and more resistant to traditional treatments. In this work, we tested the in vitro antifungal activity of acetonic extracts of Punica granatum L., Quercus suber L. and Vicia faba L. against seven pathogen fungi and the in vivo antifungal activity against Candida albicans and Trichophyton mentagrophytes. The phytochemical screening was also carried out and showed that the extracts contained mainly proanthocyanidins. Other polyphenols were also present but in low quantity...
November 14, 2016: Journal de Mycologie Médicale
https://www.readbyqxmd.com/read/27853060/physical-chemical-and-proteomic-evidence-of-potato-suberin-degradation-by-the-plant-pathogenic-bacterium-streptomyces-scabiei
#20
Carole Beaulieu, Amadou Sidibé, Raoudha Jabloune, Anne-Marie Simao-Beaunoir, Sylvain Lerat, Ernest Monga, Mark A Bernards
Potato peels consist of a tissue called phellem, which is formed by suberized cell layers. The degradation of suberin, a lipidic and recalcitrant polymer, is an ecological process attributed to soil fungal populations; however, previous studies have suggested that Streptomyces scabiei, the causal agent of potato common scab, possesses the ability to degrade suberin. In the present study, S. scabiei was grown in medium containing suberin-enriched potato phellem as the sole carbon source and its secretome was analyzed periodically (10- to 60-d-old cultures) with a special focus on proteins potentially involved in cell wall degradation...
December 23, 2016: Microbes and Environments
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