keyword
https://read.qxmd.com/read/38647956/enzyme-engineering-for-functional-lipids-synthesis-recent-advance-and-perspective
#1
REVIEW
Ailin Guan, Yue Hou, Run Yang, Jiufu Qin
Functional lipids, primarily derived through the modification of natural lipids by various processes, are widely acknowledged for their potential to impart health benefits. In contrast to chemical methods for lipid modification, enzymatic catalysis offers distinct advantages, including high selectivity, mild operating conditions, and reduced byproduct formation. Nevertheless, enzymes face challenges in industrial applications, such as low activity, stability, and undesired selectivity. To address these challenges, protein engineering techniques have been implemented to enhance enzyme performance in functional lipid synthesis...
January 2, 2024: Bioresources and Bioprocessing
https://read.qxmd.com/read/38644016/enhanced-organic-degradation-and-microbial-community-cooperation-by-inoculating-bacillus-licheniformis-in-low-temperature-composting
#2
JOURNAL ARTICLE
Jing Su, Kaiyun Zhou, Wenjie Chen, Shaoqi Xu, Ziwei Feng, Yuan Chang, Xiaoyan Ding, Yi Zheng, Xingling Tao, Ake Zhang, Yue Wang, Ji Li, Guochun Ding, Yuquan Wei
Microbial activity and interaction are the important driving factors in the start-up phase of food waste composting at low temperature. The aim of this study was to explore the effect of inoculating Bacillus licheniformis on the degradation of organic components and the potential microbe-driven mechanism from the aspects of organic matter degradation, enzyme activity, microbial community interaction, and microbial metabolic function. The results showed that after inoculating B. licheniformis, temperature increased to 47...
September 2024: Journal of Environmental Sciences (China)
https://read.qxmd.com/read/38642498/high-confidence-structural-annotation-of-substances-via-multi-layer-molecular-network-reveals-the-system-wide-constituent-alternations-in-milk-interfered-with-diphenylolpropane
#3
JOURNAL ARTICLE
Zibian Fan, Wei Jia
The spectral database-based mass spectrometry (MS) matching strategy is versatile for structural annotating in ingredient fluctuation profiling mediated by external interferences. However, the systematic variability of MS pool attributable to aliasing peaks and inadequacy of present spectral database resulted in a substantial metabolic feature depletion. An amended procedure termed multiple-charges overlap peaks extraction algorithm (MCOP) was proposed involving identifying collision-trigged dissociation precursor ions through iteratively matching mass features of fragmentations to expand the spectral reference library...
April 17, 2024: Journal of Hazardous Materials
https://read.qxmd.com/read/38635059/how-ceramides-affect-the-development-of-colon-cancer-from-normal-colon-to-carcinoma
#4
REVIEW
Nadine Merz, Jennifer Christina Hartel, Sabine Grösch
The integrity of the colon and the development of colon cancer depend on the sphingolipid balance in colon epithelial cells. In this review, we summarize the current knowledge on how ceramides and their complex derivatives influence normal colon development and colon cancer development. Ceramides, glucosylceramides and sphingomyelin are essential membrane components and, due to their biophysical properties, can influence the activation of membrane proteins, affecting protein-protein interactions and downstream signalling pathways...
April 18, 2024: Pflügers Archiv: European Journal of Physiology
https://read.qxmd.com/read/38630809/electron-videography-of-a-lipid-protein-tango
#5
JOURNAL ARTICLE
John W Smith, Lauren N Carnevale, Aditi Das, Qian Chen
Biological phenomena, from enzymatic catalysis to synaptic transmission, originate in the structural transformations of biomolecules and biomolecular assemblies in liquid water. However, directly imaging these nanoscopic dynamics without probes or labels has been a fundamental methodological challenge. Here, we developed an approach for "electron videography"-combining liquid phase electron microscopy with molecular modeling-with which we filmed the nanoscale structural fluctuations of individual, suspended, and unlabeled membrane protein nanodiscs in liquid...
April 19, 2024: Science Advances
https://read.qxmd.com/read/38617346/high-resolution-in-situ-structures-of-mammalian-mitochondrial-respiratory-supercomplexes-in-reaction-within-native-mitochondria
#6
Wan Zheng, Pengxin Chai, Jiapeng Zhu, Kai Zhang
Mitochondria play a pivotal role in ATP energy production through oxidative phosphorylation, which occurs within the inner membrane via a series of respiratory complexes. Despite extensive in-vitro structural studies, revealing the atomic details of their molecular mechanisms in physiological states remains a major challenge, primarily because of the loss of the native environment during purification. Here, we directly image porcine mitochondria using an in-situ cryo-electron microscopy approach. This enables us to determine the structures of various high-order assemblies of respiratory supercomplexes in their native states, achieving up to 1...
April 3, 2024: bioRxiv
https://read.qxmd.com/read/38611323/evaluation-of-the-quality-changes-in-three-commercial-pastourma-samples-during-refrigerated-storage-using-physicochemical-microbiological-and-image-analyses-combined-with-chemometrics
#7
JOURNAL ARTICLE
Eftichia Kritsi, Georgia Ladika, Natalia A Stavropoulou, Marianna Oikonomakou, Alexandros-George Ioannou, Paris Christodoulou, Spyridon J Konteles, Dionisis Cavouras, Vassilia J Sinanoglou
Despite the inherent stability of dried and cured products, such as pastourma, appropriate refrigeration remains essential for preserving their optimal characteristics. This study explored quality and safety characteristics in lamb, beef, and buffalo pastourma during 16-day refrigeration storage after package opening. The comprehensive approach employed Attenuated Total Reflection-Fourier-Transform Infrared (ATR-FTIR) spectroscopy, colorimetry, and image analysis, alongside physicochemical and microbiological analyses, to shed light on these alterations...
March 26, 2024: Foods (Basel, Switzerland)
https://read.qxmd.com/read/38611093/extracellular-vesicle-related-non-coding-rnas-in-hepatocellular-carcinoma-an-overview
#8
REVIEW
Giuseppa Augello, Alessandra Cusimano, Melchiorre Cervello, Antonella Cusimano
Hepatocellular carcinoma (HCC) is the most common primary liver cancer. It is a major public health problem worldwide, and it is often diagnosed at advanced stages, when no effective treatment options are available. Extracellular vesicles (EVs) are nanosized double-layer lipid vesicles containing various biomolecule cargoes, such as lipids, proteins, and nucleic acids. EVs are released from nearly all types of cells and have been shown to play an important role in cell-to-cell communication. In recent years, many studies have investigated the role of EVs in cancer, including HCC...
April 4, 2024: Cancers
https://read.qxmd.com/read/38607188/lipid-exchange-of-apolipoprotein-a-i-amyloidogenic-variants-in-reconstituted-high-density-lipoprotein-with-artificial-membranes
#9
JOURNAL ARTICLE
Yubexi Correa, Mathilde Ravel, Marie Imbert, Sarah Waldie, Luke Clifton, Ann Terry, Felix Roosen-Runge, Jens O Lagerstedt, Michael Moir, Tamim Darwish, Marité Cárdenas, Rita Del Giudice
High-density lipoproteins (HDLs) are responsible for removing cholesterol from arterial walls, through a process known as reverse cholesterol transport. The main protein in HDL, apolipoprotein A-I (ApoA-I), is essential to this process, and changes in its sequence significantly alter HDL structure and functions. ApoA-I amyloidogenic variants, associated with a particular hereditary degenerative disease, are particularly effective at facilitating cholesterol removal, thus protecting carriers from cardiovascular disease...
May 2024: Protein Science
https://read.qxmd.com/read/38594642/molecular-transportation-conversion-of-membrane-tension-using-a-mechanosensitive-channel-in-asymmetric-lipid-protein-vesicles
#10
JOURNAL ARTICLE
Kotaro Baba, Koki Kamiya
Giant lipid vesicles composed of a lipid bilayer form complex membrane structures and enzyme network reactions that can be used to construct well-defined artificial cell models based on microfluidic technologies and synthetic biology. As a different approach to cell-mimicking systems, we formed an asymmetric lipid-amphiphilic protein (oleosin) vesicle containing a lipid and an oleosin monolayer in the outer and inner leaflets, respectively. These asymmetric vesicles enabled the reconstitution and function of β-barrel types of membrane proteins (OmpG) and the fission of vesicles stimulated by lysophospholipids...
April 9, 2024: ACS Applied Materials & Interfaces
https://read.qxmd.com/read/38588468/multifunctional-lipidated-protein-carrier-with-a-built-in-adjuvant-as-a-universal-vaccine-platform-potently-elevates-immunogenicity-of-weak-antigens
#11
JOURNAL ARTICLE
Shi-Hao Zhou, Ru-Yan Zhang, Yu Wen, Yong-Ke Zou, Dong Ding, Miao-Miao Bian, Hong-Ying Cui, Jun Guo
Weak antigens represented by MUC1 are poorly immunogenic, which greatly constrains the development of relevant vaccines. Herein, we developed a multifunctional lipidated protein as a carrier, in which the TLR1/2 agonist Pam3 CSK4 was conjugated to the N -terminus of MUC1-loaded carrier protein BSA through pyridoxal 5'-phosphate-mediated transamination reaction. The resulting Pam3 CSK4 -BSA-MUC1 conjugate was subsequently incorporated into liposomes, which biomimics the membrane structure of tumor cells. The results indicated that this lipidated protein carrier significantly enhanced antigen uptake by APCs and obviously augmented the retention of the vaccine at the injection site...
April 8, 2024: Journal of Medicinal Chemistry
https://read.qxmd.com/read/38582523/photoswitchable-endocytosis-of-biomolecular-condensates-in-giant-vesicles
#12
JOURNAL ARTICLE
Agustín Mangiarotti, Mina Aleksanyan, Macarena Siri, Tsu-Wang Sun, Reinhard Lipowsky, Rumiana Dimova
Interactions between membranes and biomolecular condensates can give rise to complex phenomena such as wetting transitions, mutual remodeling, and endocytosis. In this study, light-triggered manipulation of condensate engulfment is demonstrated using giant vesicles containing photoswitchable lipids. UV irradiation increases the membrane area, which can be stored in nanotubes. When in contact with a condensate droplet, the UV light triggers rapid condensate endocytosis, which can be reverted by blue light. The affinity of the protein-rich condensates to the membrane and the reversibility of the engulfment processes is quantified from confocal microscopy images...
April 6, 2024: Advanced Science (Weinheim, Baden-Wurttemberg, Germany)
https://read.qxmd.com/read/38582424/recovery-of-organic-matters-by-activated-sludge-from-municipal-wastewater-performance-and-characterization
#13
JOURNAL ARTICLE
Junyan Lu, Qiaoling Lu, Qian Hu, Bin Qiu
Municipal wastewater treatment processes consume a significant amount of energy and generate substantial carbon emissions. However, organic matters existing in municipal wastewater hold the potential as a valuable carbon source. Activated sludge has the potential to capture and recover the organic matters, thereby enriching carbon sources and facilitating subsequent sludge anaerobic digestion as well as in line with the concept of sustainable development. Based on above, this study investigated the enrichment and recovery characteristics and mechanism of activated sludge adsorption on carbon sources in municipal wastewater, while optimizing the recovery conditions...
April 4, 2024: Environmental Research
https://read.qxmd.com/read/38575248/brazil-nut-consumption-reduces-dna-damage-in-overweight-type-2-diabetes-mellitus-patients
#14
JOURNAL ARTICLE
Tamires Pavei Macan, Marina Lummertz Magenis, Adriani Paganini Damiani, Isadora de Oliveira Monteiro, Gustavo De Bem Silveira, Rubya Pereira Zaccaron, Paulo Cesar Lock Silveira, João Paulo Fernandes Teixeira, Goran Gajski, Vanessa Moraes de Andrade
Type 2 diabetes mellitus (T2D) is a metabolic disease, which occurs largely due to unhealthy lifestyle. As oxidative stress is believed to promote T2D, by inducing damage to lipids, proteins, and DNA, appropriate dietary interventions seem critical to prevent, manage, and even reverse this condition. Brazil nuts (Bertholletia excelsa, H.B.K.) are nature's richest source of selenium, a mineral that has shown several health benefits. Therefore, this study aims to assess the effects of selenium consumption, through Brazil nuts, on biochemical and oxidative stress parameters, and genomic instability in T2D patients...
April 2024: Mutation Research. Genetic Toxicology and Environmental Mutagenesis
https://read.qxmd.com/read/38556742/warming-leads-to-changes-in-soil-organic-carbon-molecules-due-to-decreased-mineral-protection
#15
JOURNAL ARTICLE
Li Zhang, Ruilin Huang, Zhiyuan Ma, Sen Li, Jixian Ding, Weigen Huang, Chaoyang Liu, Yueyu Sui, Jizhong Zhou, Jiabao Zhang, Yuting Liang
Climate change affects the content and composition of soil organic carbon (SOC). However, warming-induced changes in the SOC compounds remain unknown. Using nuclear magnetic resonance spectroscopy, molecular mixing models, and Fourier transform ion cyclotron resonance mass spectrometry, we analyzed the variations and relationships in molecular compounds in Mollisol with 10-56 g C kg-1 soil-1 by translocating soils under six climate regimes. We found that increased temperature and precipitation were negatively correlated with carbohydrate versus lipid and lignin versus protein...
March 31, 2024: Journal of Agricultural and Food Chemistry
https://read.qxmd.com/read/38556228/effect-of-endogenous-protein-and-lipid-removal-on-the-physicochemical-and-digestion-properties-of-sand-rice-agriophyllum-squarrosum-flour
#16
JOURNAL ARTICLE
Chunsen Wu, Weizhen Wang, Juan Jia, Lunan Guo, Chen Zhang, Jian-Ya Qian
The study investigated the effect of removing protein and/or lipid on the physicochemical characteristics and digestibility of sand rice flour (SRF). Morphological images showed that protein removal had a greater impact on exposing starch granules, while lipids acted as an adhesive. The treatment altered starch content in SRF samples, leading to increased starch crystallinity, denser semi-crystalline region, lower onset gelatinization temperature (To ), higher peak viscosity and gelatinization enthalpy (ΔH), where Protein removal showed a more pronounced effect on altering physicochemical properties compared to lipid removal...
March 29, 2024: International Journal of Biological Macromolecules
https://read.qxmd.com/read/38555711/mapk15-controls-cellular-responses-to-oxidative-stress-by-regulating-nrf2-activity-and-expression-of-its-downstream-target-genes
#17
JOURNAL ARTICLE
Lorenzo Franci, Giulia Vallini, Franca Maria Bertolino, Vittoria Cicaloni, Giovanni Inzalaco, Mattia Cicogni, Laura Tinti, Laura Calabrese, Virginia Barone, Laura Salvini, Pietro Rubegni, Federico Galvagni, Mario Chiariello
Oxidation processes in mitochondria and different environmental insults contribute to unwarranted accumulation of reactive oxygen species (ROS). These, in turn, rapidly damage intracellular lipids, proteins, and DNA, ultimately causing aging and several human diseases. Cells have developed different and very effective systems to control ROS levels. Among these, removal of excessive amounts is guaranteed by upregulated expression of various antioxidant enzymes, through activation of the NF-E2-Related Factor 2 (NRF2) protein...
March 28, 2024: Redox Biology
https://read.qxmd.com/read/38545782/lipoprotein-particles-in-cerebrospinal-fluid
#18
REVIEW
Maki Tsujita, John T Melchior, Shinji Yokoyama
The brain is the most lipid-rich organ in the body, and the intricate interplay between lipid metabolism and pathologies associated with neurodegenerative disorders is being increasingly recognized. The brain is bathed in cerebrospinal fluid (CSF), which, like plasma, contains lipid-protein complexes called lipoproteins that are responsible for extracellular lipid transport. Multiple CSF lipoprotein populations exist, some of which are produced de novo in the central nervous system and others that appear to be generated from protein constituents that are produced in the periphery...
March 28, 2024: Arteriosclerosis, Thrombosis, and Vascular Biology
https://read.qxmd.com/read/38543594/advances-in-the-effects-of-dietary-macronutrients-on-the-gut-microbiota-of-tilapia-oreochromis-spp
#19
REVIEW
Weihao Ou, Zihe Guo, Ying Pan, Kai Huang, Yanqun Ma, Zhibiao Qin
The homeostasis of the intestinal microbiota of fish is beneficial to fish health, while food can affect the intestinal microbiota. Tilapia ( Oreochromis spp.) has great economic value and is a good model to use in studying the digestion and absorption of nutrients. Furthermore, at present, due to a high demand and high price of high-quality feed raw materials, the nutritional composition of aquafeeds has been changing dynamically. There has yet to be a comprehensive review of research conducted on the influences of dietary macronutrients (proteins, lipids, and carbohydrates) on the tilapia intestinal microbiota...
March 8, 2024: Microorganisms
https://read.qxmd.com/read/38543275/stem-cell-derived-extracellular-vesicles-in-the-treatment-of-cardiovascular-diseases
#20
REVIEW
Jennifer McDonald, Sidhesh Mohak, Zsolt Fabian
Cardiovascular disease constitutes a noteworthy public health challenge characterized by a pronounced incidence, frequency, and mortality rate, particularly impacting specific demographic groups, and imposing a substantial burden on the healthcare infrastructure. Certain risk factors, such as age, gender, and smoking, contribute to the prevalence of fatal cardiovascular disease, highlighting the need for targeted interventions. Current challenges in clinical practice involve medication complexities, the lack of a systematic decision-making approach, and prevalent drug therapy problems...
March 11, 2024: Pharmaceutics
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