keyword
https://read.qxmd.com/read/38633707/aptly-chosen-effectively-emphasizing-the-action-and-mechanism-of-antimycin-a-1
#21
JOURNAL ARTICLE
Linyan Zhu, Chenhong Weng, Xiaoman Shen, Xiangdong Zhu
Rhizoctonia solani Kühn, a plant pathogenic fungus that can cause diseases in multiple plant species is considered one of the common and destructive pathogens in many crops. This study investigated the action of antimycin A1, which was isolated from Streptomyces AHF-20 found in the rhizosphere soil of an ancient banyan tree, on Rhizoctonia solani and its mechanism. The inhibitory effect of antimycin A1 on R. solani was assessed using the comparative growth rate method. The results revealed that antimycin A1 exhibited a 92...
2024: Frontiers in Microbiology
https://read.qxmd.com/read/38633452/autonomous-differentiation-of-transgenic-cells-requiring-no-external-hormone-application-the-endogenous-gene-expression-and-phytohormone-behaviors
#22
JOURNAL ARTICLE
Yuka Sato, Mai F Minamikawa, Berbudi Bintang Pratama, Shohei Koyama, Mikiko Kojima, Yumiko Takebayashi, Hitoshi Sakakibara, Tomoko Igawa
The ectopic overexpression of developmental regulator (DR) genes has been reported to improve the transformation in recalcitrant plant species because of the promotion of cellular differentiation during cell culture processes. In other words, the external plant growth regulator (PGR) application during the tissue and cell culture process is still required in cases utilizing DR genes for plant regeneration. Here, the effect of Arabidopsis BABY BOOM ( BBM ) and WUSCHEL ( WUS ) on the differentiation of tobacco transgenic cells was examined...
2024: Frontiers in Plant Science
https://read.qxmd.com/read/38633384/techniques-for-assessing-telomere-length-a-methodological-review
#23
REVIEW
Hyeon Jong Yu, Yoon Hwan Byun, Chul-Kee Park
Telomeres are located at the ends of chromosomes and have specific sequences with a distinctive structure that safeguards genes. They possess capping structures that protect chromosome ends from fusion events and ensure chromosome stability. Telomeres shorten in length during each cycle of cell division. When this length reaches a certain threshold, it can lead to genomic instability, thus being implicated in various diseases, including cancer and neurodegenerative disorders. The possibility of telomeres serving as a biomarker for aging and age-related disease is being explored, and their significance is still under study...
December 2024: Computational and Structural Biotechnology Journal
https://read.qxmd.com/read/38632247/ephero-a-tandem-fluorescent-probe-to-track-the-fate-of-apoptotic-cells-during-efferocytosis
#24
JOURNAL ARTICLE
Sanjna Singh, Julien Bensalem, Leanne K Hein, Aaron Casey, Ville-Petteri Mäkinen, Timothy J Sargeant
The efficient removal of apoptotic cells via efferocytosis is critical for maintaining optimal tissue function. This involves the binding and engulfment of apoptotic cells by phagocytes and the subsequent maturation of the phagosome, culminating in lysosomal fusion and cargo destruction. However, current approaches to measure efferocytosis rely on labelling apoptotic targets with fluorescent dyes, which do not sufficiently distinguish between changes to the engulfment and acidification of apoptotic material...
April 17, 2024: Cell Death Discovery
https://read.qxmd.com/read/38632223/pgc-1a-mediated-mitochondrial-biogenesis-promotes-recovery-and-survival-of-neuronal-cells-from-cellular-degeneration
#25
JOURNAL ARTICLE
Wenting You, Kèvin Knoops, Tos T J M Berendschot, Birke J Benedikter, Carroll A B Webers, Chris P M Reutelingsperger, Theo G M F Gorgels
Neurodegenerative disorders are characterized by the progressive loss of structure and function of neurons, often including the death of the neuron. Previously, we reported that, by removing the cell death stimulus, dying/injured neurons could survive and recover from the process of regulated cell death, even if the cells already displayed various signs of cellular damage. Now we investigated the role of mitochondrial dynamics (fission/fusion, biogenesis, mitophagy) in both degeneration and in recovery of neuronal cells...
April 17, 2024: Cell Death Discovery
https://read.qxmd.com/read/38632043/yeast-sexes-mating-types-do-not-determine-the-sexes-in-metschnikowia-species
#26
JOURNAL ARTICLE
Marc-André Lachance, Christopher Burke, Karen Nygard, Marc Courchesne, Alexander V Timoshenko
Although filamentous Ascomycetes may produce structures that are interpreted as male and female gametangia, ascomycetous yeasts are generally not considered to possess male and female sexes. In haplontic yeasts of the genus Metschnikowia, the sexual cycle begins with the fusion of two morphologically identical cells of complementary mating types. Soon after conjugation, a protuberance emerges from one of the conjugants, eventually maturing into an ascus. The originating cell can be regarded as an ascus mother cell, hence as female...
April 17, 2024: FEMS Yeast Research
https://read.qxmd.com/read/38631709/preclinical-evaluation-of-two-phylogenetically-distant-arenavirus-vectors-for-the-development-of-novel-immunotherapeutic-combination-strategies-for-cancer-treatment
#27
JOURNAL ARTICLE
Josipa Raguz, Catarina Pinto, Theresa Pölzlbauer, Mohamed Habbeddine, Sandra Rosskopf, Judith Strauß, Valentin Just, Sarah Schmidt, Katell Bidet Huang, Felix Stemeseder, Timo Schippers, Ethan Stewart, Jakub Jez, Pedro Berraondo, Klaus K Orlinger, Henning Lauterbach
BACKGROUND: Engineered arenavirus vectors have recently been developed to leverage the body's immune system in the fight against chronic viral infections and cancer. Vectors based on Pichinde virus (artPICV) and lymphocytic choriomeningitis virus (artLCMV) encoding a non-oncogenic fusion protein of human papillomavirus (HPV)16 E6 and E7 are currently being tested in patients with HPV16+ cancer, showing a favorable safety and tolerability profile and unprecedented expansion of tumor-specific CD8+ T cells...
April 17, 2024: Journal for Immunotherapy of Cancer
https://read.qxmd.com/read/38631491/association-between-vertebral-endplate-defects-and-patient-reported-symptoms-an-immunohistochemical-study-investigating-the-cox-2-pge-2-ep-4-axis
#28
JOURNAL ARTICLE
Haojie Chen, Qingshuang Zhou, Xiaojiang Pu, Nannan Wang, Sinian Wang, Zhenhua Feng, Bin Wang, Zezhang Zhu, Yong Qiu, Xu Sun
BACKGROUND CONTEXT: Vertebral endplate defects are often implicated in degenerative disc disorders, yet their connection to patient-reported symptoms remains unclear. COX-2 and PGE-2 are known for their roles in inflammation and pain, with EP-4 receptor involvement in pain signaling. Examining their expression in vertebral endplate tissues may provide insights into pathomechanism of low back pain. PURPOSE: To investigate the association between endplate defects and patient-reported symptoms and to further clarify the role of the COX-2/PGE-2/EP-4 axis in the pathogenesis of chronic low back pain...
April 15, 2024: Spine Journal: Official Journal of the North American Spine Society
https://read.qxmd.com/read/38631282/biomembrane-camouflaged-nanoparticles-a-paradigm-shifts-in-targeted-drug-delivery-system
#29
REVIEW
Saba Asif Qureshi, Km Rafiya, Sakshi Awasthi, Abhishek Jain, Arif Nadaf, Nazeer Hasan, Prashant Kesharwani, Farhan Jalees Ahmad
Targeted drug delivery has emerged as a pivotal approach within precision medicine, aiming to optimize therapeutic efficacy while minimizing systemic side effects. Advanced biomimetic membrane-coated formulations have garnered significant interest from researchers as a promising strategy for targeted drug delivery, site-specific accumulation and heightened therapeutic outcomes. Biomimetic nanotechnology is able to retain the biological properties of the parent cell thus are able to exhibit superior targeting compared to conventional formulations...
April 4, 2024: Colloids and Surfaces. B, Biointerfaces
https://read.qxmd.com/read/38631214/modulation-of-mitochondrial-function-by-extracellular-acidosis-in-tumor-cells-and-normal-fibroblasts-role-of-signaling-pathways
#30
JOURNAL ARTICLE
Carmen Degitz, Sarah Reime, Christina-Marie Baumbach, Mandy Rauschner, Oliver Thews
In many tumors pronounced extracellular acidosis resulting from glycolytic metabolism is found. Since several environmental stress factors affect the mitochondrial activity the aim of the study was to analyze the impact of acidosis on cellular oxygen consumption and which signaling pathways may be involved in the regulation. In two tumor cell lines and normal fibroblasts cellular oxygen consumption rate (OCR) and mitochondrial function were measured after 3 h at pH 6.6. Besides the activation of ERK1/2, p38 and PI3K signaling in the cytosolic and mitochondrial compartment, the mitochondrial structure and proteins related to mitochondria fission were analyzed...
April 16, 2024: Neoplasia: An International Journal for Oncology Research
https://read.qxmd.com/read/38630940/influence-of-proteins-and-building-direction-on-the-corrosion-and-tribocorrosion-of-cocrmo-fabricated-by-laser-powder-bed-fusion
#31
JOURNAL ARTICLE
Masoud Atapour, Thalia E Standish, Jeffrey D Henderson, Zheng Wei, Vahid Dehnavi, Yolanda S Hedberg
Cobalt-chromium-molybdenum (CoCrMo) alloys are common wear-exposed biomedical alloys and are manufactured in multiple ways, increasingly using additive manufacturing processes such as laser powder bed fusion (LPBF). Here, we investigate the effect of proteins and the manufacturing process (wrought vs LPBF) and building orientation (LPBF- XY and XZ ) on the corrosion, metal release, tribocorrosion, and surface oxide composition by means of electrochemical, mechanical, microscopic, diffractive, and spectroscopic methods...
April 17, 2024: ACS Biomaterials Science & Engineering
https://read.qxmd.com/read/38629245/raf1-gene-fusions-are-recurrent-driver-events-in-infantile-fibrosarcoma-like-mesenchymal-tumors
#32
JOURNAL ARTICLE
Marialetizia Motta, Sabina Barresi, Simone Pizzi, Delfina Bifano, Jennifer Lopez Marti, Marta Garrido-Pontnou, Elisabetta Flex, Alessandro Bruselles, Isabella Giovannoni, Giovannina Rotundo, Alessandra Fragale, Valentina Tirelli, Silvia Vallese, Andrea Ciolfi, Gianni Bisogno, Rita Alaggio, Marco Tartaglia
Infantile fibrosarcomas (IFS) and congenital mesoblastic nephroma (CMN) are rare myofibroblastic tumors of infancy and early childhood commonly harboring the ETV6::NTRK3 gene fusion. IFS/CMN are considered as tumors with an 'intermediate prognosis' as they are locally aggressive, but rarely metastasize, and generally have a favorable outcome. A fraction of IFS/CMN-related neoplasms are negative for the ETV6::NTRK3 gene rearrangement and are characterized by other chimeric proteins promoting MAPK signaling upregulation...
April 17, 2024: Journal of Pathology
https://read.qxmd.com/read/38628727/inhibition-of-autophagosome-lysosome-fusion-contributes-to-tdcipp-induced-a%C3%AE-1-42-production-in-n2a-appswe-cells
#33
JOURNAL ARTICLE
Chunli Zou, Tingting Yang, Xinfeng Huang, Xiaohu Ren, Chen Yang, Benhong Xu, Jianjun Liu
Alzheimer's disease is the most common form of dementia and is characterized by cognitive impairment. The disruption of autophagosome-lysosome function has been linked to the pathogenesis of Alzheimer's disease. Tris (1,3-dichloro-2-propyl) phosphate (TDCIPP) is a widely used organophosphorus flame retardant that has the potential to cause neuronal damage. We found that TDCIPP significantly increased the expression of β-site amyloid precursor protein (APP)-cleaving enzyme 1 (BACE1), presenilin-1 (PS1) and Aβ42...
April 30, 2024: Heliyon
https://read.qxmd.com/read/38627910/autophagy-gene-expression-in-skeletal-muscle-of-older-individuals-is-associated-with-physical-performance-muscle-volume-and-mitochondrial-function-in-the-study-of-muscle-mobility-and-aging-somma
#34
JOURNAL ARTICLE
Paul M Coen, Zhiguang Huo, Gregory J Tranah, Haley N Barnes, Xiping Zhang, Christopher A Wolff, Kevin Wu, Peggy M Cawthon, Russell T Hepple, Frederico G S Toledo, Daniel S Evans, Olaya Santiago-Fernández, Ana Maria Cuervo, Stephen B Kritchevsky, Anne B Newman, Steven R Cummings, Karyn A Esser
Autophagy is essential for proteostasis, energetic balance, and cell defense and is a key pathway in aging. Identifying associations between autophagy gene expression patterns in skeletal muscle and physical performance outcomes would further our knowledge of mechanisms related with proteostasis and healthy aging. Muscle biopsies were obtained from participants in the Study of Muscle, Mobility, and Aging (SOMMA). For 575 participants, RNA was sequenced and expression of 281 genes related to autophagy regulation, mitophagy, and mTOR/upstream pathways was determined...
April 16, 2024: Aging Cell
https://read.qxmd.com/read/38627678/lymph-node-metastasis-prediction-and-biological-pathway-associations-underlying-dce-mri-deep-learning-radiomics-in-invasive-breast-cancer
#35
JOURNAL ARTICLE
Wenci Liu, Wubiao Chen, Jun Xia, Zhendong Lu, Youwen Fu, Yuange Li, Zhi Tan
BACKGROUND: The relationship between the biological pathways related to deep learning radiomics (DLR) and lymph node metastasis (LNM) of breast cancer is still poorly understood. This study explored the value of DLR based on dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) in LNM of invasive breast cancer. It also analyzed the biological significance of DLR phenotype based on genomics. METHODS: Two cohorts from the Cancer Imaging Archive project were used, one as the training cohort (TCGA-Breast, n = 88) and one as the validation cohort (Breast-MRI-NACT Pilot, n = 57)...
April 16, 2024: BMC Medical Imaging
https://read.qxmd.com/read/38626338/enhancing-glioblastoma-immunotherapy-with-integrated-chimeric-antigen-receptor-t-cells-through-the-re-education-of-tumor-associated-microglia-and-macrophages
#36
JOURNAL ARTICLE
Nianci Zhu, Sijia Chen, Yu Jin, Meng Wang, Luyao Fang, Lingjing Xue, Dexiang Hua, Ziyao Zhang, Meng Jia, Meixi Hao, Can Zhang
Glioblastoma (GBM) is an aggressive brain cancer that is highly resistant to treatment including chimeric antigen receptor (CAR)-T cells. Tumor-associated microglia and macrophages (TAMs) are major contributors to the immunosuppressive GBM microenvironment, which promotes tumor progression and treatment resistance. Hence, the modulation of TAMs is a promising strategy for improving the immunotherapeutic efficacy of CAR-T cells against GBM. Molecularly targeting drug pexidartinib (PLX) has been reported to re-educate TAMs toward the antitumorigenic M1-like phenotype...
April 16, 2024: ACS Nano
https://read.qxmd.com/read/38626007/egfr-dependent-endocytosis-of-wnt9a-and-fzd9b-promotes-%C3%AE-catenin-signaling-during-hematopoietic-stem-cell-development-in-zebrafish
#37
JOURNAL ARTICLE
Nicole Nguyen, Kelsey A Carpenter, Jessica Ensing, Carla Gilliland, Emma J Rudisel, Emily M Mu, Kate E Thurlow, Timothy J Triche, Stephanie Grainger
Cell-to-cell communication through secreted Wnt ligands that bind to members of the Frizzled (Fzd) family of transmembrane receptors is critical for development and homeostasis. Wnt9a signals through Fzd9b, the co-receptor LRP5 or LRP6 (LRP5/6), and the epidermal growth factor receptor (EGFR) to promote early proliferation of zebrafish and human hematopoietic stem cells during development. Here, we developed fluorescently labeled, biologically active Wnt9a and Fzd9b fusion proteins to demonstrate that EGFR-dependent endocytosis of the ligand-receptor complex was required for signaling...
April 16, 2024: Science Signaling
https://read.qxmd.com/read/38625939/integrated-mutational-landscape-analysis-of-poorly-differentiated-high-grade-neuroendocrine-carcinoma-of-the-uterine-cervix
#38
JOURNAL ARTICLE
Stefania Bellone, Kyungjo Jeong, Mari Kyllesø Halle, Camilla Krakstad, Blair McNamara, Michelle Greenman, Levent Mutlu, Cem Demirkiran, Tobias Max Philipp Hartwich, Yang Yang-Hartwich, Margherita Zipponi, Natalia Buza, Pei Hui, Francesco Raspagliesi, Salvatore Lopez, Biagio Paolini, Massimo Milione, Emanuele Perrone, Giovanni Scambia, Gary Altwerger, Antonella Ravaggi, Eliana Bignotti, Gloria S Huang, Vaagn Andikyan, Mitchell Clark, Elena Ratner, Masoud Azodi, Peter E Schwartz, Charles M Quick, Roberto Angioli, Corrado Terranova, Samir Zaidi, Shuvro Nandi, Ludmil B Alexandrov, Eric R Siegel, Jungmin Choi, Joseph Schlessinger, Alessandro D Santin
High-grade neuroendocrine cervical cancers (NETc) are exceedingly rare, highly aggressive tumors. We analyzed 64 NETc tumor samples by whole-exome sequencing (WES). Human papillomavirus DNA was detected in 65.6% (42/64) of the tumors. Recurrent mutations were identified in PIK3CA, KMT2D/MLL2, K-RAS, ARID1A, NOTCH2, and RPL10. The top mutated genes included RB1, ARID1A, PTEN, KMT2D / MLL2, and WDFY3, a gene not yet implicated in NETc. Somatic CNV analysis identified two copy number gains (3q27.1 and 19q13.12) and five copy number losses (1p36...
April 23, 2024: Proceedings of the National Academy of Sciences of the United States of America
https://read.qxmd.com/read/38625748/-in-situ-labeling-of-the-aqueous-compartment-of-extracellular-vesicles-with-luminescent-gold-nanoclusters
#39
JOURNAL ARTICLE
Ester Butera, Aurelien Dupont, Alexis Aimé, Solène Ducarre, Regina M Chiechio, Pascale Even-Hernandez, Annalinda Contino, Giuseppe Maccarone, Célia Ravel, Valérie Marchi
Extracellular vesicles (EVs) are well-known membrane-limited particles secreted by both healthy and cancerous cells. They are considered as biomarkers for early cancer diagnosis and are involved in many pathologies and physiological pathways. They could serve as diagnostic tools in liquid biopsies, as therapeutics in regenerative medicine, or as drug delivery vehicles. Our aim is here to encapsulate luminescent nanoprobes in the aqueous compartment of human EVs extracted from reproductive fluids. The analysis and labeling of the EVs content with easily detectable luminescent nanoparticles could enable a powerful tool for early diagnosis of specific diseases and also for the design of new therapeutics...
April 16, 2024: ACS Applied Materials & Interfaces
https://read.qxmd.com/read/38624210/hpv-oncogenes-expressed-from-only-one-of-multiple-integrated-hpv-dna-copies-drive-clonal-cell-expansion-in-cervical-cancer
#40
JOURNAL ARTICLE
Lulu Yu, Vladimir Majerciak, Alexei Lobanov, Sameer Mirza, Vimla Band, Haibin Liu, Maggie Cam, Stephen H Hughes, Douglas R Lowy, Zhi-Ming Zheng
UNLABELLED: The integration of HPV DNA into human chromosomes plays a pivotal role in the onset of papillomavirus-related cancers. HPV DNA integration often occurs by linearizing the viral DNA in the E1/E2 region, resulting in the loss of a critical viral early polyadenylation signal (PAS), which is essential for the polyadenylation of the E6E7 bicistronic transcripts and for the expression of the viral E6 and E7 oncogenes. Here, we provide compelling evidence that, despite the presence of numerous integrated viral DNA copies, virus-host fusion transcripts originate from only a single integrated HPV DNA in HPV16 and HPV18 cervical cancers and cervical cancer-derived cell lines...
April 16, 2024: MBio
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