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https://www.readbyqxmd.com/read/28340089/how-embryophytic-is-the-biosynthesis-of-phenylpropanoids-and-their-derivatives-in-streptophyte-algae
#1
Jan de Vries, Sophie de Vries, Claudio H Slamovits, Laura E Rose, John M Archibald
The origin of land plants from algae is a long-standing question in evolutionary biology. It is becoming increasingly clear that many characters that were once assumed to be "embryophyte-specific" can in fact be found in their closest algal relatives, the streptophyte algae. One such case is the phenylpropanoid pathway. While biochemical data indicate that streptophyte algae harbor lignin-like components, the phenylpropanoid core pathway, which serves as the backbone of lignin biosynthesis, has been proposed to have arisen at the base of the land plants...
March 13, 2017: Plant & Cell Physiology
https://www.readbyqxmd.com/read/28335093/carbohydrate-and-lipid-spectroscopic-molecular-structures-of-different-alfalfa-hay-and-their-relationship-with-nutrient-availability-in-ruminants
#2
Mojtaba Yari, Reza Valizadeh, Abbas Ali Naserian, Arjan Jonker, Peiqiang Yu
Objective: This study was conducted to determine molecular structures related to carbohydrates and lipid in alfalfa hay cut at early bud, late bud and early flower and in the afternoon and next morning using Fourier Transform Infrared Spectroscopy (FT/IR) and to determine their relationship with alfalfa hay nutrient profile and availability in ruminants. Methods: Chemical composition analysis, carbohydrate fractionation, in situ ruminal degradability and DVE/OEB model were used to measure nutrient profile and availability of alfalfa hay...
March 21, 2017: Asian-Australasian Journal of Animal Sciences
https://www.readbyqxmd.com/read/28334666/bio-refractory-dissolved-organic-matter-and-colorants-in-cassava-distillery-wastewater-characterization-coagulation-treatment-and-mechanisms
#3
Ming Zhang, Zhou Wang, Penghui Li, Hua Zhang, Li Xie
An important portion of organic matter and colorants still remain in the biologically treated distillery wastewater, leaving the dark brown and odorous downstream with the heavy loading of chemical oxygen demand and the potential of forming disinfection byproducts. However, those bio-recalcitrant colorants have not been clearly recognized. The current study investigated the features of the bio-refractory organic matter and colorants in a typical distillery effluent, cassava distillery wastewater; special attention was paid to their change and behaviors in the coagulation treatment following the bio-processes...
March 20, 2017: Chemosphere
https://www.readbyqxmd.com/read/28334199/stepwise-inference-of-likely-dynamic-flux-distributions-from-metabolic-time-series-data
#4
Mojdeh Faraji, Eberhard O Voit
Motivation: Most metabolic pathways contain more reactions than metabolites and therefore have a wide stoichiometric matrix that corresponds to infinitely many possible flux distributions that are perfectly compatible with the dynamics of the metabolites in a given dataset. This under-determinedness poses a challenge for the quantitative characterization of flux distributions from time series data and thus for the design of adequate, predictive models. Here we propose a method that reduces the degrees of freedom in a stepwise manner and leads to a dynamic flux distribution that is, in a statistical sense, likely to be close to the true distribution...
March 7, 2017: Bioinformatics
https://www.readbyqxmd.com/read/28331625/bioremediation-of-soil-contaminated-crude-oil-by-agaricomycetes
#5
M Maryam Mohammadi-Sichani, M Mazaheri Assadi, A Farazmand, M Kianirad, A M Ahadi, H Hadian Ghahderijani
BACKGROUND: One of the most important environmental problems is the decontamination of petroleum hydrocarbons polluted soil, particularly in the oil-rich country. Bioremediation is the most effective way to remove these pollutants in the soil. Spent mushroom compost has great ability to decompose lignin-like pollution. The purpose of this study was the bioremediation of soil contaminated with crude oil by an Agaricomycetes. METHODS: Soil sample amended with spent mushroom compost into 3%, 5% and 10% (w/w) with or without fertilizer...
2017: Journal of Environmental Health Science & Engineering
https://www.readbyqxmd.com/read/28331543/experimental-recreation-of-the-evolution-of-lignin-degrading-enzymes-from-the-jurassic-to-date
#6
Iván Ayuso-Fernández, Angel T Martínez, Francisco J Ruiz-Dueñas
BACKGROUND: Floudas et al. (Science 336: 1715) established that lignin-degrading fungi appeared at the end of Carboniferous period associated with the production of the first ligninolytic peroxidases. Here, the subsequent evolution of these enzymes in Polyporales, where most wood-rotting fungi are included, is experimentally recreated using genomic information. RESULTS: With this purpose, we analyzed the evolutionary pathway leading to the most efficient lignin-degrading peroxidases characterizing Polyporales species...
2017: Biotechnology for Biofuels
https://www.readbyqxmd.com/read/28330555/deciphering-the-role-of-the-phenylpropanoid-metabolism-in-the-tolerance-of-capsicum-annuum-l-to-verticillium-dahliae-kleb
#7
Marta Novo, Cristina Silvar, Fuencisla Merino, Teresa Martínez-Cortés, Fachuang Lu, John Ralph, Federico Pomar
Verticillium dahliae is an economically relevant soilborne pathogen that causes vascular wilt in several crops, including pepper (Capsicum annuum). Fungal infection is usually visualized as a vascular browning, likely due to the onset of phenylpropanoid metabolism, which also seems to play a crucial role in the tolerance of some pepper varieties. In the current work, the potential function of distinct phenylpropanoid derivatives (suberin, lignin and phenolic compounds) in the pepper tolerance response against V...
May 2017: Plant Science: An International Journal of Experimental Plant Biology
https://www.readbyqxmd.com/read/28330307/effect-of-particle-size-moisture-content-and-supplements-on-selective-pretreatment-of-cotton-stalks-by-daedalea-flavida-and-enzymatic-saccharification
#8
Harmanpreet Meehnian, Asim K Jana, Mithu Maiti Jana
A large amount of cotton stalk waste biomass with high cellulose content are incinerated by the farmers causing air pollution. The high cellulose content of cotton stalks can be converted to fermentable sugars by fungal delignification pretreatment of lignocellulosic biomass and enzymatic saccharification. The effect of particle size, moisture content, and media supplements was studied for delignification of cotton stalks by Daedalea flavida MTCC 145 (DF-2) in solid-state fermentation. The highest lignolytic enzyme activities, optimal lignin degradation 29...
December 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330215/bioremediation-of-high-strength-agricultural-wastewater-using-ochrobactrum-sp-strain-sz1
#9
Chin Hong Neoh, Chi Yong Lam, Suriati Mat Ghani, Ismail Ware, Siti Hajar Mat Sarip, Zaharah Ibrahim
The biggest agricultural sector that contributes to the Malaysian economy is the oil palm industry. The effluent generated during the production of crude palm oil known as palm oil mill effluent (POME). POME undergoes anaerobic treatment that requires long retention time and produces large amount of methane that consequently contributes to global warming. In this study, an isolated bacteria was selected based on its ability to degrade kraft lignin (KL) and identified as Ochrobactrum sp. The bacteria were able to treat POME (from anaerobic pond) under the aerobic condition without addition of nutrient, resulting in a significant chemical oxygen demand (COD) removal of 71 %, removal rate of 1385 mg/l/day, and 12...
December 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330211/cellulase-production-using-natural-medium-and-its-application-on-enzymatic-hydrolysis-of-thermo-chemically-pretreated-biomass
#10
Shivani Sharma, Vinay Sharma, Arindam Kuila
Lignocellulosic bioethanol is an important renewable fuel for transportation purpose. Commercial production of lignocellulosic bioethanol mainly depends on cost of cellulase production, efficient pretreatment and enzymatic hydrolysis process. In the present study cellulase production from Aspergillus niger under submerged fermentation (SmF) was optimized using coconut water as natural medium. Maximum cellulase production (0.53 IU/mL) was achieved within 3 days of incubation using 8 % (w/v) waste paper and 0...
December 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330203/evaluation-of-several-ionic-liquids-for-in-situ-hydrolysis-of-empty-fruit-bunches-by-locally-produced-cellulase
#11
Amal Ahmed Elgharbawy, Md Zahangir Alam, Nassereldeen Ahmad Kabbashi, Muhammad Moniruzzaman, Parveen Jamal
Lignocellulosic biomasses, exhibit resistance to enzymatic hydrolysis due to the presence of lignin and hemicellulose. Ionic liquids proved their applicability in lignin degradation, however, ionic liquid removal has to be performed to proceed to hydrolysis. Therefore, this study reports an in situ hydrolysis of empty fruit bunches (EFB) that combined an ionic liquid (IL) pretreatment and enzymatic hydrolysis. For enzyme production, palm kernel cake (PKC) was used as the primary media for microbial cellulase (PKC-Cel) from Trichoderma reesei (RUTC30)...
December 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330172/effects-of-penicillium-chrysogenum-var-halophenolicum-on-kraft-lignin-color-stabilization-and-cytotoxicity-evaluation
#12
Marlene Remédios, Filomena A Carvalho, Francisco J Enguita, Carlos Cardoso, Ivo C Martins, Nuno C Santos, Ana Lúcia Leitão
Wood industries and agricultural crops generate an inexhaustible supply of by-products like lignin, which constitutes an environmental problem. Increasing efforts have been done to find new applications for lignin. One of them is as a food additive, but its chemical nature makes it sensitive to browning which constitutes a major drawback for this type of lignin application. In the present study we are documenting how color stabilization of a commercial kraft lignin was achieved after the treatment with Penicillium chrysogenum var...
June 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330170/an-efficient-and-cost-effective-method-of-rna-extraction-from-mucilage-phenol-and-secondary-metabolite-rich-bark-tissue-of-tossa-jute-c-olitorius-l-actively-developing-phloem-fiber
#13
S B Choudhary, M Kumar, I Chowdhury, R K Singh, S P Pandey, H K Sharma, P G Karmakar
Tossa jute is an important natural fiber crop of Southeast Asian countries including India, Bangladesh, China, Thailand, Myanmar etc. Traditional industrial application of jute fiber is limited to the packaging products like hessians, sacks, etc. and the fiber found unsuitable for textile industries largely due to significantly high lignin content. Therefore, understanding genetic factors underlying lignin biosynthesis in tossa jute holds promise for jute based product diversification. The major limiting factor in undertaking such study is unavailability of efficient protocol for RNA extraction at secondary growth active stage of tossa jute...
June 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330126/characterization-of-lignin-degrading-enzymes-ldes-from-a-dimorphic-novel-fungus-and-identification-of-products-of-enzymatic-breakdown-of-lignin
#14
Lipin Dev Mundur Sahadevan, Chandra Shekhar Misra, V Thankamani
Lignin is a major component of all plants, the degradation of which remains a major challenge to date owing to its recalcitrant nature. Several classes of fungi have been studied to carry out this process to some extent, but overall the process remains inefficient. We have isolated a novel alkalophilic dimorphic lignin-degrading Deuteromycete from soil, identified as "uncultured" and coded as MVI.2011. Supernatant from 12-h culture of MVI.2011 in optimized mineral medium containing lignin pH 9.0 was analysed for Lignin Peroxidase, Manganese Peroxidase and Laccase...
June 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330098/delignification-of-miscanthus-using-ethylenediamine-eda-with-or-without-ammonia-and-subsequent-enzymatic-hydrolysis-to-sugars
#15
Sasisanker Padmanabhan, Philippe Schwyter, Zhongguo Liu, Geoffrey Poon, Alexis T Bell, John M Prausnitz
Pretreatment of miscanthus is essential for efficient enzymatic production of cellulosic ethanol. This study reports a possible pretreatment method for miscanthus using aqueous ethylenediamine (EDA) for 30 min at 180 °C with or without ammonia. The mass ratio of miscanthus to EDA was varied from 1:3, 1:1, and 1:0.5, keeping the mass ratio of miscanthus to liquid (EDA + Water) constant at 1:8. The ammonia-to-miscanthus ratio was 1:0.25. After pretreatment with a ratio of 1:3 miscanthus to EDA, about 75 % of the lignin was removed from the raw miscanthus with 90 % retention of cellulose and 50 % of hemicellulose in the recovered solid...
June 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330085/bioprospecting-and-biotechnological-applications-of-fungal-laccase
#16
REVIEW
Pooja Upadhyay, Rahul Shrivastava, Pavan Kumar Agrawal
Laccase belongs to a small group of enzymes called the blue multicopper oxidases, having the potential ability of oxidation. It belongs to enzymes, which have innate properties of reactive radical production, but its utilization in many fields has been ignored because of its unavailability in the commercial field. There are diverse sources of laccase producing organisms like bacteria, fungi and plants. In fungi, laccase is present in Ascomycetes, Deuteromycetes, Basidiomycetes and is particularly abundant in many white-rot fungi that degrade lignin...
June 2016: 3 Biotech
https://www.readbyqxmd.com/read/28326791/enantioselective-synthesis-of-dilignol-model-compounds-and-their-stereodiscrimination-study-with-a-dye-decolorizing-peroxidase
#17
Gaochao Huang, Ruben Shrestha, Kaimin Jia, Brian V Geisbrecht, Ping Li
A four-step enantioselective approach was developed to synthesize anti (1R,2S)-1a and (1S,2R)-1b containing a β-O-4 linkage in good yields. A significant difference was observed for the apparent binding affinities of four stereospecific lignin model compounds with TcDyP by surface plasmon resonance, which was not translated into a significant difference in enzyme activities. The discrepancy may be attributed to the conformational change involving a loop widely present in DyPs upon H2O2 binding.
March 22, 2017: Organic Letters
https://www.readbyqxmd.com/read/28324827/anaerobic-treatment-of-hydrothermally-solubilised-sugarcane-bagasse-and-its-kinetic-modelling
#18
Bing Liu, Van Anh Ngo, Mitsuharu Terashima, Hidenari Yasui
The aim of this study was the evaluation of anaerobic treatment for the soluble organics generated from a steam-explosion pre-treatment of sugarcane bagasse. The batch analysis revealed that about 50% of the organics was possible to be degraded into methane whilst the rest was biologically inert and composed of mostly lignin. Based on the experiment a kinetic model composed of 14 kinds of soluble substances and 5 kinds of anaerobic microorganisms was developed. The model was used to simulate the process performance of a continuous anaerobic bioreactor with MLSS concentration at 2500-15,000mg/L...
March 7, 2017: Bioresource Technology
https://www.readbyqxmd.com/read/28319777/analysis-of-the-effect-of-temperature-and-reaction-time-on-yields-compositions-and-oil-quality-in-catalytic-and-non-catalytic-lignin-solvolysis-in-a-formic-acid-water-media-using-experimental-design
#19
Mikel Oregui Bengoechea, Nemanja Miletíc, Mari H Vogt, Pedro L Arias, Tanja Barth
The catalytic solvolysis of Norway spruce (Picea abies L.) lignin in a formic acid/water media was explored at different temperatures and reaction times (283-397°C and 21-700min, respectively). Non-catalyzed experiments were compared with the effect of three different type of bifunctional catalysts (Pd/Al2O3, Rh/Al2O3 and Ru/Al2O3) and a solid Lewis acid (γ-Al2O3). We demonstrated that surface response methodology (RSM) and principal component analysis (PCA) were an adequate tool to: (i) evaluate the effect of the catalysts, temperature and reaction time in the oil yield, oil quality (H/C and O/C ratios, and Mw) and composition of the oil, (ii) establish the differences and/or similarities between the three bifunctional catalyst and (iii) to determine the role of the noble metal and the alumina support in the reaction system...
March 1, 2017: Bioresource Technology
https://www.readbyqxmd.com/read/28319765/performance-assessment-of-improved-composting-system-for-food-waste-with-varying-aeration-and-use-of-microbial-inoculum
#20
M K Manu, Rakesh Kumar, Anurag Garg
Wet waste recycling at generation point will alleviate burden on the overflowing waste dumpsites in developing nations. Drum composting is a potential treatment option for such waste at individual or community level. The present study was aimed to produce compost from wet waste (primarily comprising food waste) in composting drums modified for improved natural air circulation. Effect of microbial inoculum and waste turning on composting process was also studied. The final results showed the production of matured and stable compost in the modified drums...
March 7, 2017: Bioresource Technology
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