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https://www.readbyqxmd.com/read/28927239/tubulins-rhythms-and-cell-walls-in-poplar-leaves-it-s-all-in-the-timing
#1
Scott A Harding, Hao Hu, Batbayar Nyamdari, Liang-Jiao Xue, Radnaa Naran, Chung-Jui Tsai
Plant cell walls exhibit architectural and compositional changes throughout their development and in response to external cues. While tubulins are involved in cell wall biogenesis, much remains unknown about the scope of their involvement during the orchestration of this resource-demanding process. A transgenic approach coupled with cell wall compositional analysis, RNA-seq and mining of publicly available diurnal gene expression data was used to assess the involvement of tubulins in poplar leaf cell wall biogenesis...
September 12, 2017: Tree Physiology
https://www.readbyqxmd.com/read/28926914/temperature-and-ph-influence-adsorption-of-cellobiohydrolase-onto-lignin-by-changing-the-protein-properties
#2
Xianqin Lu, Can Wang, Xuezhi Li, Jian Zhao
Non-productive adsorption of cellulase onto lignin restricted the movement of cellulase and also hindered the cellulase recycling in bioconversion of lignocellulose. In this study, effect of temperature and pH on adsorption and desorption of cellobiohydrolase (CBH) on lignin and its possible mechanism were discussed. It found that pH value and temperature influenced the adsorption and desorption behaviors of CBH on lignin. Different thermodynamic models suggested that the action between lignin and CBH was physical action...
August 24, 2017: Bioresource Technology
https://www.readbyqxmd.com/read/28926703/effect-of-non-ionic-surfactants-on-dispersion-and-polar-interactions-in-the-adsorption-of-cellulases-onto-lignin
#3
Feng Jiang, Chen Qian, Alan R Esker, Maren Roman
Residual lignin in pretreated biomass impedes enzymatic hydrolysis. Non-ionic surfactants are known to enhance the enzymatic hydrolysis of lignocellulosic biomass but their mechanisms of action are incompletely understood. This study investigates the effect of a non-ionic surfactant, Tween 80, on the adsorption of cellulases onto model lignin substrates. Lignin substrates were prepared by spin coating of flat substrates with three different types of lignin: organosolv lignin, kraft lignin, and milled wood lignin...
September 19, 2017: Journal of Physical Chemistry. B
https://www.readbyqxmd.com/read/28926698/quantification-of-lignin-and-its-structural-features-in-plant-biomass-using-13-c-lignin-as-internal-standard-for-pyrolysis-gc-sim-ms
#4
Gijs van Erven, Ries de Visser, Donny W H Merkx, Willem Strolenberg, Peter De Gijsel, Harry Gruppen, Mirjam A Kabel
Understanding mechanisms underlying plant biomass recalcitrance at molecular level can only be achieved by accurate analyses of both content and structural features of the molecules involved. Current quantification of lignin is, however, majorly based on unspecific gravimetric analysis after sulphuric acid hydrolysis. Hence, our research aimed at specific lignin quantification with concurrent characterization of its structural features. Hereto, for the first time, a polymeric (13)C lignin was used as internal standard (IS) for lignin quantification via analytical pyrolysis coupled to gas chromatography with mass-spectrometric detection in selected ion monitoring mode (py-GC-SIM-MS)...
September 19, 2017: Analytical Chemistry
https://www.readbyqxmd.com/read/28926153/comparative-and-population-genomics-landscape-of-phellinus-noxius-a-hypervariable-fungus-causing-root-rot-in-trees
#5
Chia-Lin Chung, Tracy J Lee, Mitsuteru Akiba, Hsin-Han Lee, Tzu-Hao Kuo, Dang Liu, Huei-Mien Ke, Toshiro Yokoi, Marylette B Roa, Meiyeh J Lu, Ya-Yun Chang, Pao-Jen Ann, Jyh-Nong Tsai, Chien-Yu Chen, Shean-Shong Tzean, Yuko Ota, Tsutomu Hattori, Norio Sahashi, Ruey-Fen Liou, Taisei Kikuchi, Isheng J Tsai
The order Hymenochaetales of white rot fungi contain some of the most aggressive wood decayers causing tree deaths around the world. Despite their ecological importance and the impact of diseases they cause, little is known about the evolution and transmission patterns of these pathogens. Here, we sequenced and undertook comparative genomics analyses of Hymenochaetales genomes using brown root rot fungus Phellinus noxius, wood-decomposing fungus Phellinus lamaensis, laminated root rot fungus Phellinus sulphurascens, and trunk pathogen Porodaedalea pini...
September 19, 2017: Molecular Ecology
https://www.readbyqxmd.com/read/28925867/lignocellulosic-biomass-derived-functional-materials-synthesis-and-applications-in-biomedical-engineering
#6
Lei Zhang, Xinwen Peng, Linxin Zhong, Weitian Chua, Zhihua Xiang, Runcang Sun
The pertinent issue of resources shortage arising from global climate change in the recent years has accentuated the importance of materials that are environmental friendly. Despite the merits of current material like cellulose as the most abundant natural polysaccharide on earth, the incorporation of lignocellulosic biomass has the potential to value-add the recent development of cellulose-derivatives in drug delivery systems. Lignocellulosic biomass, with a hierarchical structure, comprised of cellulose, hemicellulose and lignin...
September 18, 2017: Current Medicinal Chemistry
https://www.readbyqxmd.com/read/28924453/a-novel-and-efficient-fungal-delignification-strategy-based-on-versatile-peroxidase-for-lignocellulose-bioconversion
#7
Wen Kong, Xiao Fu, Lei Wang, Ahmad Alhujaily, Jingli Zhang, Fuying Ma, Xiaoyu Zhang, Hongbo Yu
BACKGROUND: The selective lignin-degrading white-rot fungi are regarded to be the best lignin degraders and have been widely used for reducing the saccharification recalcitrance of lignocellulose. However, the biological delignification and conversion of lignocellulose in biorefinery is still limited. It is necessary to develop novel and more efficient bio-delignification systems. RESULTS: Physisporinus vitreus relies on a new versatile peroxidase (VP)-based delignification strategy to remove enzymatic recalcitrance of corn stover efficiently, so that saccharification of corn stover was significantly enhanced to 349...
2017: Biotechnology for Biofuels
https://www.readbyqxmd.com/read/28924452/greenhouse-gas-performance-of-biochemical-biodiesel-production-from-straw-soil-organic-carbon-changes-and-time-dependent-climate-impact
#8
Hanna Karlsson, Serina Ahlgren, Mats Sandgren, Volkmar Passoth, Ola Wallberg, Per-Anders Hansson
BACKGROUND: Use of bio-based diesel is increasing in Europe. It is currently produced from oilseed crops, but can also be generated from lignocellulosic biomass such as straw. However, removing straw affects soil organic carbon (SOC), with potential consequences for the climate impact of the biofuel. This study assessed the climate impacts and energy balance of biodiesel production from straw using oleaginous yeast, with subsequent biogas production from the residues, with particular emphasis on SOC changes over time...
2017: Biotechnology for Biofuels
https://www.readbyqxmd.com/read/28922794/genome-wide-variation-patterns-uncover-the-origin-and-selection-in-cultivated-ginseng-panax-ginseng-meyer
#9
Ming-Rui Li, Feng-Xue Shi, Ya-Ling Li, Peng Jiang, Lili Jiao, Bao Liu, Lin-Feng Li
Chinese ginseng (Panax ginseng Meyer) is a medicinally important herb and plays crucial roles in traditional Chinese medicine. Pharmacological analyses identified diverse bioactive components from Chinese ginseng. However, basic biological attributes including domestication and selection of the ginseng plant remain under-investigated. Here, we presented a genome-wide view of the domestication and selection of cultivated ginseng based on the whole genome data. A total of 8,660 protein-coding genes were selected for genome-wide scanning of the 30 wild and cultivated ginseng accessions...
September 1, 2017: Genome Biology and Evolution
https://www.readbyqxmd.com/read/28921082/expression-analysis-of-transporter-genes-for-screening-candidate-monolignol-transporters-using-arabidopsis-thaliana-cell-suspensions-during-tracheary-element-differentiation
#10
Manami Takeuchi, Takahiro Kegasa, Atsushi Watanabe, Miho Tamura, Yuji Tsutsumi
The mechanism of monolignol transportation from the cytosol to the apoplast is still unclear despite being an essential step of lignification. Recently, ATP-binding cassette (ABC) transporters were suggested to be involved in monolignol transport. However, there are no reliable clues to the transporters of the major lignin monomers coniferyl and synapyl alcohol. In this study, the lignification progress of Arabidopsis cultured cells during tracheary element differentiation was monitored. The expression of selected transporter genes, as well as lignification and cell-wall formation related genes as references, in differentiating cultured cell samples harvested at 2-day intervals was analyzed by real-time PCR and the data were statistically processed...
September 18, 2017: Journal of Plant Research
https://www.readbyqxmd.com/read/28920390/-advance-of-heterologous-expression-study-of-eukaryote-origin-laccases
#11
Na Ning, Huijun Tan, Xinxin Sun, Jinfeng Ni
Laccases are enzymes belonging to the group of multi-copper oxidases. These enzymes are widely distributed in insects, plants, fungi and bacteria. In general, laccases can oxidize an exceptionally high number of substrates, so they have broad applications in textile, pulp, food and the degradation of lignin. However, low yield, low activity and thermo-instability of laccase in nature limit the application of laccase. High efficient heterologous expression of the protein is an effective way for solving this problem...
April 25, 2017: Sheng Wu Gong Cheng Xue Bao, Chinese Journal of Biotechnology
https://www.readbyqxmd.com/read/28919942/genome-sequence-of-the-white-rot-fungus-irpex-lacteus-f17-a-type-strain-of-lignin-degrader-fungus
#12
Mengwei Yao, Wenman Li, Zihong Duan, Yinliang Zhang, Rong Jia
Irpex lacteus, a cosmopolitan white-rot fungus, degrades lignin and lignin-derived aromatic compounds. In this study, we report the high-quality draft genome sequence of I. lacteus F17, isolated from a decaying hardwood tree in the vicinity of Hefei, China. The genome is 44,362,654 bp, with a GC content of 49.64% and a total of 10,391 predicted protein-coding genes. In addition, a total of 18 snRNA, 842 tRNA, 15 rRNA operons and 11,710 repetitive sequences were also identified. The genomic data provides insights into the mechanisms of the efficient lignin decomposition of this strain...
2017: Standards in Genomic Sciences
https://www.readbyqxmd.com/read/28919927/characterization-of-a-heat-tolerant-chlorella-sp-gd-mutant-with-enhanced-photosynthetic-co2-fixation-efficiency-and-its-implication-as-lactic-acid-fermentation-feedstock
#13
Tse-Min Lee, Yu-Fei Tseng, Chieh-Lun Cheng, Yi-Chuan Chen, Chih-Sheng Lin, Hsiang-Yen Su, Te-Jin Chow, Chun-Yen Chen, Jo-Shu Chang
BACKGROUND: Fermentative production of lactic acid from algae-based carbohydrates devoid of lignin has attracted great attention for its potential as a suitable alternative substrate compared to lignocellulosic biomass. RESULTS: A Chlorella sp. GD mutant with enhanced thermo-tolerance was obtained by mutagenesis using N-methyl-N'-nitro-N-nitrosoguanidine to overcome outdoor high-temperature inhibition and it was used as a feedstock for fermentative lactic acid production...
2017: Biotechnology for Biofuels
https://www.readbyqxmd.com/read/28919904/plasticity-of-sorghum-stem-biomass-accumulation-in-response-to-water-deficit-a-multiscale-analysis-from-internode-tissue-to-plant-level
#14
Lisa Perrier, Lauriane Rouan, Sylvie Jaffuel, Anne Clément-Vidal, Sandrine Roques, Armelle Soutiras, Christelle Baptiste, Denis Bastianelli, Denis Fabre, Cécile Dubois, David Pot, Delphine Luquet
Sorghum is increasingly used as a biomass crop worldwide. Its genetic diversity provides a large range of stem biochemical composition suitable for various end-uses as bioenergy or forage. Its drought tolerance enables it to reasonably sustain biomass production under water limited conditions. However, drought effect on the accumulation of sorghum stem biomass remains poorly understood which limits progress in crop improvement and management. This study aimed at identifying the morphological, biochemical and histological traits underlying biomass accumulation in the sorghum stem and its plasticity in response to water deficit...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28917917/characterization-of-structural-cell-wall-polysaccharides-in-cattail-typha-latifolia-evaluation-as-potential-biofuel-feedstock
#15
Diego Rebaque, Romina Martínez-Rubio, Silvia Fornalé, Penélope García-Angulo, Ana Alonso-Simón, Jesús M Álvarez, David Caparros-Ruiz, José L Acebes, Antonio Encina
Second generation bioethanol produced from lignocellulosic biomass is attracting attention as an alternative energy source. In this study, a detailed knowledge of the composition and structure of common cattail (Typha latifolia L.) cell wall polysaccharides, obtained from stem or leaves, has been conducted using a wide set of techniques to evaluate this species as a potential bioethanol feedstock. Our results showed that common cattail cellulose content was high for plants in the order Poales and was accompanied by a small amount of cross-linked polysaccharides...
November 1, 2017: Carbohydrate Polymers
https://www.readbyqxmd.com/read/28917896/environmental-and-technical-feasibility-of-cellulose-nanocrystal-manufacturing-from-sugarcane-bagasse
#16
Rosineide Miranda Leão, Patrícia Câmara Miléo, João M L L Maia, Sandra Maria Luz
The environmental and technical feasibility of cellulose nanocrystal production from sugarcane bagasse fibers was evaluated. First, the life cycle assessment (LCA) is presented as a methodology to investigate the most feasible form of obtainment. The environmental impacts regarding climate change and water footprint were evaluated considering a gate-to-gate process and a functional unit of 1kg. The inventory data encompassed sugarcane plantation and pretreatment, bleaching and hydrolysis for bagasse generation...
November 1, 2017: Carbohydrate Polymers
https://www.readbyqxmd.com/read/28917889/fabrication-of-cellulose-nanocrystal-from-carex-meyeriana-kunth-and-its-application-in-the-adsorption-of-methylene-blue
#17
Xue Yang, Hui Liu, Fuyi Han, Shuai Jiang, Lifang Liu, Zhaopeng Xia
Cellulose nanocrystal (CNC) was extracted from Carex meyeriana Kunth (CMK) by a combination of TEMPO oxidation and mechanical homogenization method, and used to remove methylene blue (MB) from aqueous solution. After alkali-oxygen treatment, the aqueous biphasic system (polyethylene glycol/inorganic salt) was applied to further remove lignin from CMK. The characteriazation of CNC, and the effects of H2O2 dosage, CNC dosage, adsorption time, and initial MB concentration on the MB removal capacity of CNC were investigated...
November 1, 2017: Carbohydrate Polymers
https://www.readbyqxmd.com/read/28917866/rapidly-growing-vegetables-as-new-sources-for-lignocellulose-nanofibre-isolation-physicochemical-thermal-and-rheological-characterisation
#18
Eduardo Espinosa, Rafael Sánchez, Zoilo González, Juan Domínguez-Robles, Begoña Ferrari, Alejandro Rodríguez
Rapidly growing vegetables could be an abundant and cheap sources of lignocellulose biomass for lignocellulose nanofibre (LCNF) production. The aim of this work is to study the feasibility of using Chamaecytisus proliferus and Leucaena leucocephala for LCNF isolation by mechanical, enzymatic and TEMPO-mediated oxidation pre-treatments. Characterisation of the nanofibres shows that there are significant differences in the production of LCNF depending on the raw material and pre-treatment used. XRD and FTIR analysis show that homogenisation has a strong negative effect on the crystallinity index; however, the higher lignin content of tagasaste (10%) protects the fibre, causing a smaller decrease in crystallinity...
November 1, 2017: Carbohydrate Polymers
https://www.readbyqxmd.com/read/28916828/invasive-andropogon-gayanus-gamba-grass-alters-litter-decomposition-and-nitrogen-fluxes-in-an-australian-tropical-savanna
#19
N A Rossiter-Rachor, S A Setterfield, L B Hutley, D McMaster, S Schmidt, M M Douglas
The African grass Andropogon gayanus Kunth. is invading Australian savannas, altering their ecological and biogeochemical function. To assess impacts on nitrogen (N) cycling, we quantified litter decomposition and N dynamics of grass litter in native grass and A. gayanus invaded savanna using destructive in situ grass litter harvests and litterbag incubations (soil surface and aerial position). Only 30% of the A. gayanus in situ litter decomposed, compared to 61% of the native grass litter, due to the former being largely comprised of highly resistant A...
September 15, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28916814/expression-of-brown-midrib-in-a-spontaneous-sorghum-mutant-is-linked-to-a-5-utr-deletion-in-lignin-biosynthesis-gene-sbcad2
#20
Huang Li, Yinghua Huang
Brown midrib (bmr) mutants in sorghum (Sorghum bicolor (L.) Moench) and several other C4 grasses are associated with reduced lignin concentration, altered lignin composition and improved cell wall digestibility, which are desirable properties in biomass development for the emerging lignocellulosic biofuel industry. Studying bmr mutants has considerably expanded our understanding of the molecular basis underlying lignin biosynthesis and perturbation in grasses. In this study, we performed quantitative trait locus (QTL) analysis, identified and cloned a novel cinnamyl alcohol dehydrogenase allele (SbCAD2) that has an 8-bp deletion in its 5'-untranslated region (UTR), conferring the spontaneous brown midrib trait and lignin reduction in the sorghum germplasm line PI 595743...
September 15, 2017: Scientific Reports
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