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https://www.readbyqxmd.com/read/27933082/rna-seq-transcriptome-response-of-flax-linum-usitatissimum-l-to-the-pathogenic-fungus-fusarium-oxysporum-f-sp-lini
#1
Leonardo Galindo-González, Michael K Deyholos
Fusarium oxysporum f. sp. lini is a hemibiotrophic fungus that causes wilt in flax. Along with rust, fusarium wilt has become an important factor in flax production worldwide. Resistant flax cultivars have been used to manage the disease, but the resistance varies, depending on the interactions between specific cultivars and isolates of the pathogen. This interaction has a strong molecular basis, but no genomic information is available on how the plant responds to attempted infection, to inform breeding programs on potential candidate genes to evaluate or improve resistance across cultivars...
2016: Frontiers in Plant Science
https://www.readbyqxmd.com/read/27932083/room-temperature-ionic-liquids-based-salting-in-strategy-for-counter-current-chromatography-in-the-separation-of-arctiin
#2
Yanyan Wang, Lihong Zhang, Dingding Wang, Xiuyun Guo, Shihua Wu
Counter-current chromatography (CCC) is a solid support-free liquid-liquid partition chromatography and has wide applications. However, CCC separation is still a challenging process and the selection of appropriate solvent system for separation of target compound(s) is still relatively time-consuming. In this work, we introduced a room temperature ionic liquids-based salting-in strategy for the rapid selection of suitable solvent systems for CCC separation. In the randomly selected solvent systems, such as ethyl acetate-water, n-butanol-water, n-pentanol-water, n-hexanol-water, and n-octanol-water, several ionic liquids such as [AMIM]Cl, [MAMIM]Cl, and [BMIM]Cl can increase the solubility of the solutes in the lower phase, which made a dose-dependent decreasing of partition coefficient of solute in the two-phase solvent system...
November 30, 2016: Journal of Chromatography. A
https://www.readbyqxmd.com/read/27925410/unraveling-the-role-of-formic-acid-and-the-type-of-solvent-in-the-catalytic-conversion-of-lignin-a-holistic-approach
#3
Mikel Oregui Bengoechea, Iñaki Gandarias, Pedro Luis Arias, Tanja Barth
The role of formic acid together with the effect of the solvent type and their synergic interactions with a NiMo catalyst were studied for the conversion of lignin into bio-oil in an alcohol/formic acid media. Replacing formic acid with molecular hydrogen or isopropanol decreased the oil yield to a considerable degree, increased the solid yield and altered the nature of the bio-oil. The differences induced by the presence of molecular hydrogen were comparable to the ones observed in the isopropanol system, suggesting similar lignin conversion mechanisms for both systems...
December 7, 2016: ChemSusChem
https://www.readbyqxmd.com/read/27922209/unconventional-pretreatment-of-lignocellulose-with-low-temperature-plasma
#4
Jens Vanneste, Thijs Ennaert, Annick Vanhulsel, Bert F Sels
Lignocellulose represents a potential supply of sustainable feedstock for the production of biofuels and chemicals. There is, however, an important cost and efficiency challenge associated with the conversion of such lignocellulosics. Since its structure is complex and not prone to undergo chemical reactions very easily, chemical and mechanical pretreatments are usually necessary in order to be able to refine them into the compositional building blocks (carbohydrates and lignin), from which value-added platform molecules such as glucose, ethylene glycol, 5-hydroxymethylfurfural, levulinic acid, etc...
December 6, 2016: ChemSusChem
https://www.readbyqxmd.com/read/27921258/erratum-to-identification-of-the-phenol-functionality-in-deprotonated-monomeric-and-dimeric-lignin-degradation-products-via-tandem-mass-spectrometry-based-on-ion-molecule-reactions-with-diethylmethoxyborane
#5
Hanyu Zhu, Tiffany M Jarrell, Nathaniel Louden, Joann P Max, Christopher L Marcum, Hao Luo, James S Riedeman, Mahdi M Abu-Omar, Hilkka I Kenttämaa
No abstract text is available yet for this article.
December 5, 2016: Journal of the American Society for Mass Spectrometry
https://www.readbyqxmd.com/read/27920761/diversity-and-distribution-of-phenol-oxidase-producing-fungi-from-soda-lake-and-description-of-curvularia-lonarensis-sp-nov
#6
Rahul Sharma, Om Prakash, Mahesh S Sonawane, Yogesh Nimonkar, Priyanka B Golellu, Rohit Sharma
Soda lake is hyper alkaline and saline habitat located in closed craters with high evaporation rate. In current study fungal diversity from water and sediment samples of a soda lake (Lonar lake) located in Buldhana district of Maharashtra, India was investigated using extensive culturomics approach and mimicking the natural conditions of Lonar lake in culture media. A total of 104 diverse isolates of extremophilic fungi were recovered from this study and phylogenetically characterized by internal transcribed spacer (ITS) region sequencing...
2016: Frontiers in Microbiology
https://www.readbyqxmd.com/read/27919544/dual-effect-of-soluble-materials-in-pretreated-lignocellulose-on-simultaneous-saccharification-and-co-fermentation-process-for-the-bioethanol-production
#7
Lei Qin, Xia Li, Li Liu, Jia-Qing Zhu, Qi-Man Guan, Man-Tong Zhang, Wen-Chao Li, Bing-Zhi Li, Ying-Jin Yuan
In this study, wash liquors isolated from ethylenediamine and dry dilute acid pretreated corn stover were used to evaluate the effect of soluble materials in pretreated biomass on simultaneous saccharification and co-fermentation (SSCF) for ethanol production, respectively. Both of the wash liquors had different impacts on enzymatic hydrolysis and fermentation. Enzymatic conversions of glucan and xylan monotonically decreased as wash liquor concentration increased. Whereas, with low wash liquor concentrations, xylose consumption rate, cell viability and ethanol yield were maximally stimulated in fermentation without nutrient supplementary...
November 29, 2016: Bioresource Technology
https://www.readbyqxmd.com/read/27918246/rice-leaf-transcriptional-profiling-suggests-a-functional-interplay-between-xanthomonas-oryzae-pv-oryzae-lipopolysaccharide-and-extracellular-polysaccharide-in-modulation-of-defense-responses-during-infection
#8
Anil Madhusoodana Girija, Bipin Kumar Kumar, Madhavi B Mylavarapu, Palaparthi Ramesh, Sridivya Vungarala, Hitendra Kumar Patel, Ramesh Sonti
Treatment of rice leaves with isolated Xanthomonas oryzae pv. oryzae lipopolysaccharide (LPS) induces the production of callose deposits, reactive oxygen species and enhanced resistance against subsequent bacterial infection. Expression profiling of X. oryzae pv. oryzae LPS treated rice (Oryza sativa ssp. indica) leaves showed that genes involved in the biosynthetic pathways for lignins, phenylpropanoids, chorismate, phenylalanine, salicylic acid and ethylene as well as a number of pathogenesis related proteins are up regulated...
December 5, 2016: Molecular Plant-microbe Interactions: MPMI
https://www.readbyqxmd.com/read/27917955/fractionation-for-further-conversion-from-raw-corn-stover-to-lactic-acid
#9
Ting He, Zhicheng Jiang, Ping Wu, Jian Yi, Jianmei Li, Changwei Hu
Fractionation is considered to be one promising strategy to utilize raw biomass to its fullest and produce chemicals with high selectivity. Herein, ethanol/H2O (1/1, v/v) co-solvent with 0.050 M oxalic acid is used to simultaneously fractionate 88.0 wt% of hemicellulose and 89.2 wt% of lignin in corn stover, while cellulose is not obviously degraded. H2O dissolves hemicellulose, G unit and those with β-O-4 linkage of lignin; whereas ethanol extracts G and S units as well as the skeleton with β-5 and β-β linkages of lignin...
December 5, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27917912/xylanase-treatment-suppresses-light-and-heat-induced-yellowing-of-pulp
#10
Daolei Zhang, Xuezhi Li, Meimei Wang, Yanxin Ye, Jian Du, Xianqin Lu, Jian Zhao
Xylanase is commonly applied in pulp and paper industries to ease cost-related and environmental pressures. The effect of xylanase treatment on pulp bleaching is well-established, however, few studies were conducted on the effects of xylanase treatment in pulp yellowing, especially the mechanism of pulp yellowing inhibition by xylanase treatment. In this study, pure xylanase (EC 3.2.1.8) was applied to treat wheat straw chemical pulp (CP) and poplar chemi-thermo-mechanical pulp (CTMP) to determine their effects on pulp brightness and on light- and heat-induced yellowing...
December 5, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27917379/current-understanding-of-the-correlation-of-lignin-structure-with-biomass-recalcitrance
#11
REVIEW
Mi Li, Yunqiao Pu, Arthur J Ragauskas
Lignin, a complex aromatic polymer in terrestrial plants, contributes significantly to biomass recalcitrance to microbial and/or enzymatic deconstruction. To reduce biomass recalcitrance, substantial endeavors have been exerted on pretreatment and lignin engineering in the past few decades. Lignin removal and/or alteration of lignin structure have been shown to result in reduced biomass recalcitrance with improved cell wall digestibility. While high lignin content is usually a barrier to a cost-efficient application of bioresources to biofuels, the direct correlation of lignin structure and its concomitant properties with biomass remains unclear due to the complexity of cell wall and lignin structure...
2016: Frontiers in Chemistry
https://www.readbyqxmd.com/read/27917179/evaluation-of-relationships-between-growth-rate-tree-size-lignocellulose-composition-and-enzymatic-saccharification-in-interspecific-corymbia-hybrids-and-parental-taxa
#12
Adam L Healey, David J Lee, Jason S Lupoi, Gabriella Papa, Joel M Guenther, Luca Corno, Fabrizio Adani, Seema Singh, Blake A Simmons, Robert J Henry
In order for a lignocellulosic bioenergy feedstock to be considered sustainable, it must possess a high rate of growth to supply biomass for conversion. Despite the desirability of a fast growth rate for industrial application, it is unclear what effect growth rate has on biomass composition or saccharification. We characterized Klason lignin, glucan, and xylan content with response to growth in Corymbia interspecific F1 hybrid families (HF) and parental species Corymbia torelliana and C. citriodora subspecies variegata and measured the effects on enzymatic hydrolysis from hydrothermally pretreated biomass...
2016: Frontiers in Plant Science
https://www.readbyqxmd.com/read/27916801/macromolecular-interactions-control-structural-and-thermal-properties-of-regenerated-tri-component-blended-films
#13
Ashley Lewis, Joshua C Waters, John Stanton, Joseph Hess, David Salas-de la Cruz
With a growing need for sustainable resources research has become highly interested in investigating the structure and physical properties of biomaterials composed of natural macromolecules. In this study, we assessed the structural, morphological, and thermal properties of blended, regenerated films comprised of cellulose, lignin, and hemicellulose (xylan) using the ionic liquid 1-allyl-3-methylimidazolium chloride (AMIMCl). Attenuated total reflectance Fourier transform infrared (ATR-FTIR) analysis, scanning electron microscopy (SEM), atomic force microscopy (AFM), X-ray scattering, and thermogravimetric analysis (TGA) were used to qualitatively and quantitatively measure bonding interactions, morphology, and thermal stability of the regenerated films...
November 28, 2016: International Journal of Molecular Sciences
https://www.readbyqxmd.com/read/27913169/liquid-nitrogen-pretreatment-of-eucalyptus-sawdust-and-rice-hull-for-enhanced-enzymatic-saccharification
#14
Rafael Castoldi, Vanesa G Correa, Gutierrez Rodrigues de Morais, Cristina G M de Souza, Adelar Bracht, Rosely A Peralta, Regina F Peralta-Muniz Moreira, Rosane M Peralta
In this work, liquid nitrogen was used for the first time in the pretreatment of plant biomasses for purposes of enzymatic saccharification. After treatment (cryocrushing), the initial rates of the enzymatic hydrolysis of eucalyptus sawdust and rice hull were increased more than ten-fold. Cryocrushing did not modify significantly the contents of cellulose, hemicellulose and lignin in both eucalyptus sawdust and rice hulls. However, substantial disorganization of the lignocellulosic materials in consequence of the pretreatment could be observed by electron microscopy...
November 25, 2016: Bioresource Technology
https://www.readbyqxmd.com/read/27912189/genotoxicity-assessment-of-pulp-and-paper-mill-effluent-before-and-after-bacterial-degradation-using-allium-cepa-test
#15
Izharul Haq, Sharad Kumar, Abhay Raj, Mohtashim Lohani, G N V Satyanarayana
A lignin peroxidases-producing Serratia liquefaciens was used for bioremediation of pulp and paper (P&P) mill effluent. The treatment led to reduction of chemical oxygen demand (COD), colour, lignin and phenolic content by 84%, 72%, 61% and 95%, respectively. The effluent detoxification was studied by genotoxicity assays using Allium cepa L. (onion) root tip cells. Genotoxicity studies included measuring mitotic index (MI), chromosomal aberrations (CA) and nuclear abnormalities (NA) in root tip cells following treatment with 25, 50, 75 and 100% (v/v) of effluent...
November 29, 2016: Chemosphere
https://www.readbyqxmd.com/read/27911781/structure-and-mechanism-of-nov1-a-resveratrol-cleaving-dioxygenase
#16
Ryan P McAndrew, Noppadon Sathitsuksanoh, Michael M Mbughuni, Richard A Heins, Jose H Pereira, Anthe George, Kenneth L Sale, Brian G Fox, Blake A Simmons, Paul D Adams
Stilbenes are diphenyl ethene compounds produced naturally in a wide variety of plant species and some bacteria. Stilbenes are also derived from lignin during kraft pulping. Stilbene cleavage oxygenases (SCOs) cleave the central double bond of stilbenes, forming two phenolic aldehydes. Here, we report the structure of an SCO. The X-ray structure of NOV1 from Novosphingobium aromaticivorans was determined in complex with its substrate resveratrol (1.89 Å), its product vanillin (1.75 Å), and without any bound ligand (1...
November 30, 2016: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/27910789/methoxyflavones-from-new-lingzhi-medicinal-mushroom-ganoderma-lingzhi-agaricomycetes
#17
Kuniyoshi Shimizu, Yhiya M Amen, Satoru Kaifuchi
Ganoderma lingzhi is one of the most famous medicinal fungi in the world. It has been used in folk medicine, especially in East Asian countries. It is also a white-rot fungus with strong wood degradation ability, especially against lignin. Different classes of bioactive natural products have been reported in Ganoderma, including triterpenes, polysaccharides, sterols, and peptides. The triterpenes and polysaccharides are the primary bioactive compounds of Ganoderma. We report for the first time the presence of 3 methoxyflavones as minor constituents in G...
2016: International Journal of Medicinal Mushrooms
https://www.readbyqxmd.com/read/27910256/simultaneous-upgrading-of-furanics-and-phenolics-via-hydroxyalkylation-aldol-condensation-reactions
#18
Tuong V Bui, Tawan Sooknoi, Daniel E Resasco
The simultaneous conversion of cyclopentanone and m-cresol has been investigated on a series of solid acid catalysts. Both compounds are representative of biomass-derived streams. Cyclopentanone can be readily obtained from sugar-derived furfurals via Piancatelli rearrangement under reducing conditions. Cresol represents the family of phenolics, typically obtained from the depolymerization of lignin. In the first biomass conversion strategy proposed here, furfural is converted in high yields and selectivity to cyclopentanone (CPO) over metal catalysts such as Pd-Fe/SiO2 catalyst at 600 psia H2 and 150oC...
December 1, 2016: ChemSusChem
https://www.readbyqxmd.com/read/27909335/lignin-aunps-liquid-marble-for-remotely-controllable-detection-of-pb-2
#19
Guocheng Han, Xiaoying Wang, Jonathan Hamel, Hongli Zhu, Runcang Sun
This work reported the green and facile fabrication of a versatile lignin-AuNP composite, which was readily and remotely encapsulated to form novel liquid marbles. The marbles can stay suspended in water, and show excellent photothermal conversion properties, as well as visual detection and adsorption towards Pb(2+). More importantly, the marbles can simultaneously remotely detect and adsorb Pb(2+) via co-precipitation by simply controlling the near infrared (NIR) irradiation. It is believed that the remotely-controllable NIR-responsive lignin-AuNPs liquid marble can be used in Pb(2+)-related reactions...
December 2, 2016: Scientific Reports
https://www.readbyqxmd.com/read/27908712/potential-of-lignin-from-canna-edulis-ker-residue-in-the-inhibition-of-%C3%AE-d-glucosidase-kinetics-and-interaction-mechanism-merging-with-docking-simulation
#20
Fan Xie, Shengxiang Gong, Wei Zhang, Jinhong Wu, Zhengwu Wang
In this study, we extracted lignin from Canna edulis ker residue. Its chemical structure, inhibitory activity on α-d-glucosidase, and kinetics as well as interaction mechanism were investigated by using spectrum analysis and docking simulation. The isolated lignin was composed by guaiacyl and syringal units, and exhibited stronger inhibition on α-d-glucosidase than acarbose with the half maximal inhibitory concentration at 5.3±0.3μM. It was a non-competitive inhibitior with Km and Ki values of 0.53±0.02mM and 0...
November 28, 2016: International Journal of Biological Macromolecules
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