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https://www.readbyqxmd.com/read/28635996/reply-to-engelthaler-and-meyer-furthering-the-continental-drift-speciation-hypothesis-in-the-pathogenic-cryptococcus-species-complexes
#1
COMMENT
Arturo Casadevall, Joudeh B Freij, Christopher Hann-Soden, John Taylor
No abstract text is available yet for this article.
May 2017: MSphere
https://www.readbyqxmd.com/read/28634717/morphological-diversification-among-island-populations-of-intertidal-mites-acari-oribatida-fortuyniidae-from-the-gal%C3%A3-pagos-archipelago
#2
Tobias Pfingstl, Julia Baumann
The intertidal oribatid mite species Alismobates galapagoensis and Litoribates caelestis occur on the archipelago of Galápagos. To test for morphological variation between populations of different islands, a comprehensive morphometric study was performed. Four A. galapagoensis populations from the islands Bartolomé, Isabela, Santa Cruz and San Cristobal, as well as two L. caelestis populations from Bartolomé and Santa Cruz were investigated. The L. caelestis populations did not show any significant differences whereas the A...
June 20, 2017: Experimental & Applied Acarology
https://www.readbyqxmd.com/read/28633639/fusobacterial-liver-abscess-a-case-report-and-review-of-the-literature
#3
Dilip Jayasimhan, Linus Wu, Paul Huggan
BACKGROUND: Fusobacteriae are facultative anaerobic gram-negative bacilli which cause a range of invasive infections, amongst which pyogenic liver abscesses are rare. We describe a case of Fusobacterium nucleatum liver abscess and review the relevant literature. CASE PRESENTATION: A 51-year-old lady presented with a 4-day history of abdominal pain, diarrhoea, fever, rigors, and lethargy. Imaging revealed an abscess which was drained. Cultures of the blood and abscess aspirate grew Fusobacterium nucleatum and Prevotella pleuritidis respectively...
June 20, 2017: BMC Infectious Diseases
https://www.readbyqxmd.com/read/28633349/colchicine-application-significantly-affects-plant-performance-in-the-second-generation-of-synthetic-polyploids-and-its-effects-vary-between-populations
#4
Zuzana Münzbergová
Background and Aims: Understanding the direct consequences of polyploidization is necessary for assessing the evolutionary significance of this mode of speciation. Previous studies have not studied the degree of between-population variation that occurs due to these effects. Although it is assumed that the effects of the substances that create synthetic polyploids disappear in second-generation synthetic polyploids, this has not been tested. Methods: The direct consequences of polyploidization were assessed and separated from the effects of subsequent evolution in Vicia cracca , a naturally occurring species with diploid and autotetraploid cytotypes...
June 14, 2017: Annals of Botany
https://www.readbyqxmd.com/read/28632790/diversity-structure-of-culturable-bacteria-isolated-from-the-fildes-peninsula-king-george-island-antarctica-a-phylogenetic-analysis-perspective
#5
Gerardo González-Rocha, Gabriel Muñoz-Cartes, Cristian B Canales-Aguirre, Celia A Lima, Mariana Domínguez-Yévenes, Helia Bello-Toledo, Cristián E Hernández
It has been proposed that Antarctic environments select microorganisms with unique biochemical adaptations, based on the tenet 'Everything is everywhere, but, the environment selects' by Baas-Becking. However, this is a hypothesis that has not been extensively evaluated. This study evaluated the fundamental prediction contained in this hypothesis-in the sense that species are structured in the landscape according to their local habitats-, using as study model the phylogenetic diversity of the culturable bacteria of Fildes Peninsula (King George Island, Antarctica)...
2017: PloS One
https://www.readbyqxmd.com/read/28632344/a-life-cycle-approach-to-species-barriers
#6
Kerstin Johannesson
What maintains reproductive barriers between closely related species is, of course, of fundamental interest to a closer understanding of the mechanisms that generate new biodiversity. One important dichotomy is to separate barriers evolved from divergent selection over environmental gradients (extrinsic barriers) from barriers caused by incompatibilities between different genetic arrangements that may have evolved in isolation (intrinsic barriers). This dichotomy also reflects an important applied consequence...
July 2017: Molecular Ecology
https://www.readbyqxmd.com/read/28631802/aqueous-tantalum-polyoxometalate-reactivity-with-peroxide
#7
Lauren B Fullmer, Christopher E Malmberg, Dylan B Fast, Lindsay A Wills, Paul Ha-Yeon Cheong, Michelle R Dolgos, May Nyman
Peroxide ligation of aqueous metal-oxo clusters provides rich speciation and structural diversity, radiation sensitivity for manipulation with light, and both broadens and shifts pH-range stability. Here we demonstrate peroxide ligation of the polyoxometalate (POM) [Ta6O19](8-). We study in detail solution speciation of the peroxide-substituted cluster, and benchmark it to the peroxide-ligated niobate analogue, [Nb6O10(OH)3(O2)6](5-), whose solid-state structure has been reported. Raman and electrospray ionization mass spectroscopy do not detect any significant differences between the two analogues...
June 20, 2017: Dalton Transactions: An International Journal of Inorganic Chemistry
https://www.readbyqxmd.com/read/28631324/recent-origin-and-rapid-speciation-of-neotropical-orchids-in-the-world-s-richest-plant-biodiversity-hotspot
#8
Oscar Alejandro Pérez-Escobar, Guillaume Chomicki, Fabien L Condamine, Adam P Karremans, Diego Bogarín, Nicholas J Matzke, Daniele Silvestro, Alexandre Antonelli
The Andean mountains of South America are the most species-rich biodiversity hotspot worldwide with c. 15% of the world's plant species, in only 1% of the world's land surface. Orchids are a key element of the Andean flora, and one of the most prominent components of the Neotropical epiphyte diversity, yet very little is known about their origin and diversification. We address this knowledge gap by inferring the biogeographical history and diversification dynamics of the two largest Neotropical orchid groups (Cymbidieae and Pleurothallidinae), using two unparalleled, densely sampled orchid phylogenies (including more than 400 newly generated DNA sequences), comparative phylogenetic methods, geological and biological datasets...
July 2017: New Phytologist
https://www.readbyqxmd.com/read/28630941/furthering-the-continental-drift-speciation-hypothesis-in-the-pathogenic-cryptococcus-species-complexes
#9
David M Engelthaler, Wieland Meyer
No abstract text is available yet for this article.
May 2017: MSphere
https://www.readbyqxmd.com/read/28630911/the-genomic-mosaicism-of-hybrid-speciation
#10
Tore O Elgvin, Cassandra N Trier, Ole K Tørresen, Ingerid J Hagen, Sigbjørn Lien, Alexander J Nederbragt, Mark Ravinet, Henrik Jensen, Glenn-Peter Sætre
Hybridization is widespread in nature and, in some instances, can result in the formation of a new hybrid species. We investigate the genetic foundation of this poorly understood process through whole-genome analysis of the hybrid Italian sparrow and its progenitors. We find overall balanced yet heterogeneous levels of contribution from each parent species throughout the hybrid genome and identify areas of novel divergence in the hybrid species exhibiting signals consistent with balancing selection. High-divergence areas are disproportionately located on the Z chromosome and overrepresented in gene networks relating to key traits separating the focal species, which are likely involved in reproductive barriers and/or species-specific adaptations...
June 2017: Science Advances
https://www.readbyqxmd.com/read/28630326/reconstruction-and-evolutionary-history-of-eutherian-chromosomes
#11
Jaebum Kim, Marta Farré, Loretta Auvil, Boris Capitanu, Denis M Larkin, Jian Ma, Harris A Lewin
Whole-genome assemblies of 19 placental mammals and two outgroup species were used to reconstruct the order and orientation of syntenic fragments in chromosomes of the eutherian ancestor and six other descendant ancestors leading to human. For ancestral chromosome reconstructions, we developed an algorithm (DESCHRAMBLER) that probabilistically determines the adjacencies of syntenic fragments using chromosome-scale and fragmented genome assemblies. The reconstructed chromosomes of the eutherian, boreoeutherian, and euarchontoglires ancestor each included >80% of the entire length of the human genome, whereas reconstructed chromosomes of the most recent common ancestor of simians, catarrhini, great apes, and humans and chimpanzees included >90% of human genome sequence...
June 19, 2017: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/28630293/a-null-model-for-microbial-diversification
#12
Timothy J Straub, Olga Zhaxybayeva
Whether prokaryotes (Bacteria and Archaea) are naturally organized into phenotypically and genetically cohesive units comparable to animal or plant species remains contested, frustrating attempts to estimate how many such units there might be, or to identify the ecological roles they play. Analyses of gene sequences in various closely related prokaryotic groups reveal that sequence diversity is typically organized into distinct clusters, and processes such as periodic selection and extensive recombination are understood to be drivers of cluster formation ("speciation")...
June 19, 2017: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/28627883/mechanism-of-vanadium-leaching-during-surface-weathering-of-basic-oxygen-furnace-steel-slag-blocks-a-%C3%A2%C2%B5xanes-and-sem-study
#13
Andrew James Hobson, Douglas I Stewart, Andrew William Bray, Robert J G Mortimer, William Matthew Mayes, Michael Rogerson, Ian T Burke
Basic oxygen furnace (BOF) steelmaking slag is enriched in potentially toxic V which may become mobilised in high pH leachate during weathering. BOF slag was weathered under aerated and air-excluded conditions for 6 months prior to SEM/EDS and µXANES analysis to determine V host phases and speciation in both primary and secondary phases. Leached blocks show development of an altered region in which free lime and dicalcium silicate phases were absent and Ca-Si-H was precipitated (CaCO3 was also present under aerated conditions)...
June 19, 2017: Environmental Science & Technology
https://www.readbyqxmd.com/read/28626946/do-changes-in-gene-expression-contribute-to-sexual-isolation-and-reinforcement-in-the-house-mouse
#14
Etienne Loire, Sergio Tusso, Pierre Caminade, Dany Severac, Pierre Boursot, Guila Ganem, Carole M Smadja
Expression divergence, rather than sequence divergence, has been shown to be important in speciation, particularly in the early stages of divergence of traits involved in reproductive isolation. In the two European subspecies of house mice, Mus musculus musculus and M. m. domesticus, earlier studies have demonstrated olfactory-based assortative mate preference in populations close to their hybrid zone. It has been suggested that this behaviour evolved following the recent secondary contact between the two taxa (~3,000 years ago) in response to selection against hybridisation...
June 19, 2017: Molecular Ecology
https://www.readbyqxmd.com/read/28624516/pleistocene-range-shifts-refugia-and-the-origin-of-widespread-species-in-western-palaearctic-water-beetles
#15
David García-Vázquez, David T Bilton, Garth N Foster, I Ribera
Quaternary glacial cycles drove major shifts in both the extent and location of the geographical ranges of many organisms. During glacial maxima, large areas of central and northern Europe were inhospitable to temperate species, and these areas are generally assumed to have been recolonized during interglacials by range expansions from Mediterranean refugia. An alternative is that this recolonization was from non-Mediterranean refugia, in central Europe or western Asia, but data on the origin of widespread central and north European species remain fragmentary, especially for insects...
June 14, 2017: Molecular Phylogenetics and Evolution
https://www.readbyqxmd.com/read/28623831/tracking-historical-mobility-behavior-and-sources-of-lead-in-the-59-year-sediment-core-from-the-huaihe-river-using-lead-isotopic-compositions
#16
Jie Wang, Guijian Liu, Houqi Liu, Paul K S Lam
A historical perspective of past 59 years (1955-2014) for contamination and isotopic composition of Pb in sediment core system of the Huaihe River, Huainan City, Anhui Province of China is presented. Detailed investigation regarding changes in Pb sources, enrichment factor, sequential extraction and isotopic analysis revealed that high Pb concentrations were detected along the core, especially during the first two decades (1955-1974). Large variations in Pb isotopic compositions were observed, with (206)Pb/(207)Pb and (208)Pb/(207)Pb values ranging from 1...
June 8, 2017: Chemosphere
https://www.readbyqxmd.com/read/28623393/limited-mhc-class-i-intron-2-repertoire-variation-in-bonobos
#17
Natasja G de Groot, Corrine M C Heijmans, Philippe Helsen, Nel Otting, Zjef Pereboom, Jeroen M G Stevens, Ronald E Bontrop
Common chimpanzees (Pan troglodytes) experienced a selective sweep, probably caused by a SIV-like virus, which targeted their MHC class I repertoire. Based on MHC class I intron 2 data analyses, this selective sweep took place about 2-3 million years ago. As a consequence, common chimpanzees have a skewed MHC class I repertoire that is enriched for allotypes that are able to recognise conserved regions of the SIV proteome. The bonobo (Pan paniscus) shared an ancestor with common chimpanzees approximately 1...
June 16, 2017: Immunogenetics
https://www.readbyqxmd.com/read/28622673/exact-algorithms-for-duplication-transfer-loss-reconciliation-with-non-binary-gene-trees
#18
Misagh Kordi, Mukul S Bansal
Duplication-Transfer-Loss (DTL) reconciliation is a powerful method for studying gene family evolution in the presence of horizontal gene transfer. DTL reconciliation seeks to reconcile gene trees with species trees by postulating speciation, duplication, transfer, and loss events. Efficient algorithms exist for finding optimal DTL reconciliations when the gene tree is binary. In practice, however, gene trees are often non-binary due to uncertainty in the gene tree topologies, and DTL reconciliation with non-binary gene trees is known to be NP-hard...
June 1, 2017: IEEE/ACM Transactions on Computational Biology and Bioinformatics
https://www.readbyqxmd.com/read/28621954/van-der-waals-contribution-to-the-relative-stability-of-aqueous-zn-2-coordination-states
#19
Manoj Ducher, Fabio Pietrucci, Etienne Balan, Guillaume Ferlat, Lorenzo Paulatto, Marc Blanchard
Many properties of aqueous cations depend on their coordination state. However, the lack of long-range order and the dynamic character of aqueous solutions make it difficult to obtain information beyond average coordination parameters. A thorough understanding of the molecular scale environment of aqueous cations usually requires a combination of experimental and theoretical approaches. In the case of Zn(2+), significant discrepancies occur among theoretical investigations based on first-principles molecular-dynamics (FPMD) or free-energy calculations, although experimental data consistently point to a dominant hexaaquo-zinc complex (Zn[H2O]6)(2+) in pure water...
June 16, 2017: Journal of Chemical Theory and Computation
https://www.readbyqxmd.com/read/28621368/vaporization-of-protic-ionic-liquids-derived-from-organic-superbases-and-short-carboxylic-acids
#20
Filipe M S Ribeiro, Carlos F R A C Lima, Inês C M Vaz, Ana S M C Rodrigues, Erlin Sapei, André Melo, Artur M S Silva, Luís M N B F Santos
This work presents a comprehensive evaluation of the phase behaviour and cohesive enthalpy of protic ionic liquids (PILs) composed of 1,5-diazabicyclo[4.3.0]non-5-ene (DBN) or 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) organic superbases with short-chain length (acetic, propionic and butyric) carboxylic acids. Glass transition temperatures, Tg, and enthalpies of vaporization, ΔHvap, were measured for six [BH][A] (1 : 1) PILs (B = DBN, DBU; A = MeCOO, EtCOO, nPrCOO), revealing more significant changes upon increasing the number of -CH2- groups in the base than in the acid...
June 16, 2017: Physical Chemistry Chemical Physics: PCCP
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