keyword
https://read.qxmd.com/read/38617517/comprehensive-analysis-of-exosome-gene-lypd3-and-prognosis-immune-cell-infiltration-in-lung-cancer
#21
JOURNAL ARTICLE
Tao Xin, Chunlong Zheng, Gui-Zhen Li, Xinyao Xu, Jipeng Zhang, Chenghui Jia, Pengyu Jing, Qiang Lu
BACKGROUND: Lung cancer (LC) is a leading cause of cancer-associated mortality worldwide, with high incidence and mortality rates. Ly6/PLAUR domain containing 3 (LYPD3) is a tumorigenic and highly glycosylated cell surface protein that has been rarely reported in LC. This study aimed to explore the prognostic role and immune cell infiltration of LYPD3 in LC. METHODS: We used ExoCarta, a database of exosomal proteins and RNA, to select exosomes in LC. The Tumor Immune Estimation Resource (TIMER) and Human Protein Atlas (HPA) databases were utilized to compare the expression of LYPD3 in LC...
March 31, 2024: Translational Cancer Research
https://read.qxmd.com/read/38616733/caspase-resistant-rock1-expression-prolongs-survival-of-e%C3%A2%C2%B5-myc-b-cell-lymphoma-mice
#22
JOURNAL ARTICLE
Katerina Mardilovich, Gregory Naylor, Linda Julian, Narisa Phinichkusolchit, Karen Keeshan, Karen Blyth, Michael F Olson
Apoptosis is characterized by membrane blebbing and apoptotic body formation. Caspase cleavage of ROCK1 generates an active fragment that promotes actin-myosin mediated contraction and membrane blebbing during apoptosis. Expression of caspase-resistant non-cleavable ROCK1 (Rock1 NC) prolonged survival of mice that rapidly develop B cell lymphomas due to Eµ-Myc transgene expression. Eµ-Myc; Rock1 NC mice had significantly fewer bone marrow cells relative to Eµ-Myc mice expressing wild-type ROCK1 (Rock1 WT), which was associated with altered cell cycle profiles...
April 15, 2024: Disease Models & Mechanisms
https://read.qxmd.com/read/38614376/alternative-splicing-in-emt-and-tgf-%C3%AE-signaling-during-cancer-progression
#23
REVIEW
Ying E Zhang, Christina H Stuelten
Epithelial to mesenchymal transition (EMT) is a physiological process during development where epithelial cells transform to acquire mesenchymal characteristics, which allows them to migrate and colonize secondary tissues. Many cellular signaling pathways and master transcriptional factors exert a myriad of controls to fine tune this vital process to meet various developmental and physiological needs. Adding to the complexity of this network are post-transcriptional and post-translational regulations. Among them, alternative splicing has been shown to play important roles to drive EMT-associated phenotypic changes, including actin cytoskeleton remodeling, cell-cell junction changes, cell motility and invasiveness...
April 11, 2024: Seminars in Cancer Biology
https://read.qxmd.com/read/38613695/membrane-potential-dynamics-of-c5a-stimulated-neutrophil-granulocytes
#24
JOURNAL ARTICLE
Stina Becker, Aljoscha Swoboda, Henrik Siemer, Sandra Schimmelpfennig, Sarah Sargin, Victor Shahin, Albrecht Schwab, Karolina Najder
Neutrophil granulocytes play a crucial role in host defense against invading pathogens and in inflammatory diseases. The aim of this study was to elucidate membrane potential dynamics during the initial phase of neutrophil activation and its relation to migration and production of reactive oxygen species (ROS). We performed ROS production measurements of neutrophils from healthy C57BL/6J mice after TNFα-priming and/or C5a stimulation. The actin cytoskeleton was visualized with fluorescence microscopy...
April 13, 2024: Pflügers Archiv: European Journal of Physiology
https://read.qxmd.com/read/38613336/multi-scale-analysis-of-heat-stress-acclimation-in-arabidopsis-seedlings-highlights-the-primordial-contribution-of-energy-transducing-organelles
#25
JOURNAL ARTICLE
Elise Réthoré, Sandra Pelletier, Thierry Balliau, Michel Zivy, Marie-Hélène Avelange-Macherel, David Macherel
Much progress has been made in understanding the molecular mechanisms of plant adaptation to heat stress. However, the great diversity of models and stress conditions, and the fact that analyses are often limited to a small number of approaches, complicate the picture. We took advantage of a liquid culture system in which Arabidopsis seedlings are arrested in their development, thus avoiding interference with development and drought stress responses, to investigate through an integrative approach seedlings' global response to heat stress and acclimation...
April 13, 2024: Plant Journal
https://read.qxmd.com/read/38613224/eh-domain-containing-protein-2-ehd2-overview-biological-function-and-therapeutic-potential
#26
REVIEW
Guoqiang Zhu, Hu Zhang, Min Xia, Yiqi Liu, Mingyong Li
EH domain-containing protein 2 (EHD2) is a member of the EHD protein family and is mainly located in the plasma membrane, but can also be found in the cytoplasm and endosomes. EHD2 is also a nuclear-cytoplasmic shuttle protein. After entering the cell nuclear, EHD2 acts as a corepressor of transcription to inhibit gene transcription. EHD2 regulates a series of biological processes. As a key regulator of endocytic transport, EHD2 is involved in the formation and maintenance of endosomal tubules and vesicles, which are critical for the intracellular transport of proteins and other substances...
April 2024: Cell Biochemistry and Function
https://read.qxmd.com/read/38612409/insights-into-the-mechanism-of-action-of-the-degraded-limonoid-prieurianin
#27
REVIEW
Gérard Vergoten, Christian Bailly
Limonoids are extremely diversified in plants, with many categories of products bearing an intact, rearranged or fragmented oxygenated scaffold. A specific subgroup of fragmented or degraded limonoids derives from the tetranortriterpenoid prieurianin, initially isolated from the tree Trichilia prieuriana but also found in other plants of the Meliaceae family, including the more abundant species Aphanamixis polystachya . Prieurianin-type limonoids include about seventy compounds, among which are dregeanin and rohitukin...
March 22, 2024: International Journal of Molecular Sciences
https://read.qxmd.com/read/38609390/semmaphorin-3%C3%A2-a-causes-immune-suppression-by-inducing-cytoskeletal-paralysis-in-tumour-specific-cd8-t-cells
#28
JOURNAL ARTICLE
Mike B Barnkob, Yale S Michaels, Violaine André, Philip S Macklin, Uzi Gileadi, Salvatore Valvo, Margarida Rei, Corinna Kulicke, Ji-Li Chen, Vitul Jain, Victoria K Woodcock, Huw Colin-York, Andreas V Hadjinicolaou, Youxin Kong, Viveka Mayya, Julie M Mazet, Gracie-Jennah Mead, Joshua A Bull, Pramila Rijal, Christopher W Pugh, Alain R Townsend, Audrey Gérard, Lars R Olsen, Marco Fritzsche, Tudor A Fulga, Michael L Dustin, E Yvonne Jones, Vincenzo Cerundolo
Semaphorin-3A (SEMA3A) functions as a chemorepulsive signal during development and can affect T cells by altering their filamentous actin (F-actin) cytoskeleton. The exact extent of these effects on tumour-specific T cells are not completely understood. Here we demonstrate that Neuropilin-1 (NRP1) and Plexin-A1 and Plexin-A4 are upregulated on stimulated CD8+ T cells, allowing tumour-derived SEMA3A to inhibit T cell migration and assembly of the immunological synapse. Deletion of NRP1 in both CD4+ and CD8+ T cells enhance CD8+ T-cell infiltration into tumours and restricted tumour growth in animal models...
April 12, 2024: Nature Communications
https://read.qxmd.com/read/38609383/dynamic-interplay-of-microtubule-and-actomyosin-forces-drive-tissue-extension
#29
JOURNAL ARTICLE
Amrita Singh, Sameedha Thale, Tobias Leibner, Lucas Lamparter, Andrea Ricker, Harald Nüsse, Jürgen Klingauf, Milos Galic, Mario Ohlberger, Maja Matis
In order to shape a tissue, individual cell-based mechanical forces have to be integrated into a global force pattern. Over the last decades, the importance of actomyosin contractile arrays, which are the key constituents of various morphogenetic processes, has been established for many tissues. Recent studies have demonstrated that the microtubule cytoskeleton mediates folding and elongation of the epithelial sheet during Drosophila morphogenesis, placing microtubule mechanics on par with actin-based processes...
April 12, 2024: Nature Communications
https://read.qxmd.com/read/38608841/proteomics-derived-biomarker-panel-facilitates-distinguishing-primary-lung-adenocarcinomas-with-intestinal-or-mucinous-differentiation-paim-from-lung-metastatic-colorectal-cancer-lmcrc
#30
JOURNAL ARTICLE
Jiaying Liu, Xiaona Chang, Liujia Qian, Shuo Chen, Zhangzhi Xue, Junhua Wu, Danju Luo, Bo Huang, Jun Fan, Tiannan Guo, Xiu Nie
The diagnosis of primary lung adenocarcinomas with intestinal or mucinous differentiation (PAIM) remains challenging due to the overlapping histomorphological, immunohistochemical and genetic characteristics with lung metastatic colorectal cancer (lmCRC). This study aimed to explore the protein biomarkers that could distinguish between PAIM and lmCRC. To uncover differences between the two diseases, we used tandem mass tagging (TMT)-based shotgun proteomics to characterize proteomes of formalin-fixed paraffin-embedded (FFPE) tumor samples of PAIM (n = 22) and lmCRC (n = 17)...
April 10, 2024: Molecular & Cellular Proteomics: MCP
https://read.qxmd.com/read/38608425/molecular-architecture-of-the-actin-cytoskeleton-from-single-cells-to-whole-organisms-using-cryo-electron-tomography
#31
REVIEW
Jonathan Schneider, Marion Jasnin
Cryo-electron tomography (cryo-ET) has begun to provide intricate views of cellular architecture at unprecedented resolutions. Considerable efforts are being made to further optimize and automate the cryo-ET workflow, from sample preparation to data acquisition and analysis, to enable visual proteomics inside of cells. Here, we will discuss the latest advances in cryo-ET that go hand in hand with their application to the actin cytoskeleton. The development of deep learning tools for automated annotation of tomographic reconstructions and the serial lift-out sample preparation procedure will soon make it possible to perform high-resolution structural biology in a whole new range of samples, from multicellular organisms to organoids and tissues...
April 11, 2024: Current Opinion in Cell Biology
https://read.qxmd.com/read/38604990/conditional-deficiency-of-rho-associated-kinases-disrupts-endothelial-cell-junctions-and-impairs-respiratory-function-in-adult-mice
#32
JOURNAL ARTICLE
Takahiro Akamine, Takeshi Terabayashi, Takako Sasaki, Riku Hayashi, Ichitaro Abe, Fumihiro Hirayama, Shin-Ichi Nureki, Masahito Ikawa, Haruhiko Miyata, Akinori Tokunaga, Takashi Kobayashi, Katsuhiro Hanada, Dean Thumkeo, Shuh Narumiya, Toshimasa Ishizaki
The Ras homology (Rho) family of GTPases serves various functions, including promotion of cell migration, adhesion, and transcription, through activation of effector molecule targets. One such pair of effectors, the Rho-associated coiled-coil kinases (ROCK1 and ROCK2), induce reorganization of actin cytoskeleton and focal adhesion through substrate phosphorylation. Studies on ROCK knockout mice have confirmed that ROCK proteins are essential for embryonic development, but their physiological functions in adult mice remain unknown...
April 11, 2024: FEBS Open Bio
https://read.qxmd.com/read/38600846/cytoskeleton-remodeling-a-central-player-in-plant-fungus-interactions
#33
JOURNAL ARTICLE
Jyotsna Sinha, Yeshveer Singh, Praveen Kumar Verma
The eukaryotic cytoskeleton is a complex scaffold consisting of actin filaments, intermediate filaments, and microtubules. Though fungi and plants lack intermediate filaments, the dynamic structural network of actin filaments and microtubules regulates cell shape, division, polarity, and vesicular trafficking in both. However, the specialized functions of the cytoskeleton during plant-fungus interactions remain elusive. Recent reports demonstrate that the plant cytoskeleton responds to signal cues and pathogen invasion through remodeling, thereby coordinating immune receptor trafficking, membrane microdomain formation, aggregation of organelles, and transport of defense compounds...
April 11, 2024: Journal of Experimental Botany
https://read.qxmd.com/read/38598293/whamm-functions-in-kidney-reabsorption-and-polymerizes-actin-to-promote-autophagosomal-membrane-closure-and-cargo-sequestration
#34
JOURNAL ARTICLE
Alyssa M Coulter, Valerie Cortés, Corey J Theodore, Rachel E Cianciolo, Ron Korstanje, Kenneth G Campellone
The actin cytoskeleton is essential for many functions of eukaryotic cells, but the factors that nucleate actin assembly are not well understood at the organismal level or in the context of disease. To explore the function of the actin nucleation factor WHAMM in mice, we examined how Whamm inactivation impacts kidney physiology and cellular proteostasis . We show that male WHAMM knockout mice excrete elevated levels of albumin, glucose, phosphate, and amino acids, and display structural abnormalities of the kidney proximal tubule, suggesting that WHAMM activity is important for nutrient reabsorption...
April 10, 2024: Molecular Biology of the Cell
https://read.qxmd.com/read/38598031/pps1-phosphatidylserine-synthase-regulates-the-salt-stress-response-in-schizosaccharomyces-pombe
#35
JOURNAL ARTICLE
Gohki Naozuka, Makoto Kawamukai, Yasuhiro Matsuo
Phosphatidylserine (PS) is important for maintaining growth, cytoskeleton, and various functions in yeast; however, its role in stress responses is poorly understood. In Schizosaccharomyces pombe, the PS synthase deletion (pps1∆) mutant shows defects in growth, morphology, cytokinesis, actin cytoskeleton, and cell wall integrity, and these phenotypes are rescued by ethanolamine supplementation. Here, we evaluated the role of Pps1 in the salt stress response in S. pombe. We found that pps1∆ cells are sensitive to salt stresses such as KCl and CaCl2 even in the presence of ethanolamine...
April 10, 2024: Molecular Genetics and Genomics: MGG
https://read.qxmd.com/read/38597186/icam-1-nanoclusters-regulate-hepatic-epithelial-cell-polarity-by-leukocyte-adhesion-independent-control-of-apical-actomyosin
#36
JOURNAL ARTICLE
Cristina Cacho-Navas, Carmen López-Pujante, Natalia Reglero-Real, Natalia Colás-Algora, Ana Cuervo, Jose Javier Conesa, Susana Barroso, Gema de Rivas, Sergio Ciordia, Alberto Paradela, Gianluca D'Agostino, Carlo Manzo, Jorge Feito, Germán Andrés, Francisca Molina-Jiménez, Pedro Majano, Isabel Correas, José-Maria Carazo, Sussan Nourshargh, Meritxell Huch, Jaime Millán
Epithelial intercellular adhesion molecule (ICAM)-1 is apically polarized, interacts with, and guides leukocytes across epithelial barriers. Polarized hepatic epithelia organize their apical membrane domain into bile canaliculi and ducts, which are not accessible to circulating immune cells but that nevertheless confine most of ICAM-1. Here, by analyzing ICAM-1_KO human hepatic cells, liver organoids from ICAM-1_KO mice and rescue-of-function experiments, we show that ICAM-1 regulates epithelial apicobasal polarity in a leukocyte adhesion-independent manner...
April 10, 2024: ELife
https://read.qxmd.com/read/38590971/twisted-plywood-like-tissue-formation-in-vitro-does-curvature-do-the-twist
#37
JOURNAL ARTICLE
Barbara Schamberger, Sebastian Ehrig, Thomas Dechat, Silvia Spitzer, Cécile M Bidan, Peter Fratzl, John W C Dunlop, Andreas Roschger
Little is known about the contribution of 3D surface geometry to the development of multilayered tissues containing fibrous extracellular matrix components, such as those found in bone. In this study, we elucidate the role of curvature in the formation of chiral, twisted-plywood-like structures. Tissues consisting of murine preosteoblast cells (MC3T3-E1) were grown on 3D scaffolds with constant-mean curvature and negative Gaussian curvature for up to 32 days. Using 3D fluorescence microscopy, the influence of surface curvature on actin stress-fiber alignment and chirality was investigated...
April 2024: PNAS Nexus
https://read.qxmd.com/read/38589403/basal-actomyosin-pulses-expand-epithelium-coordinating-cell-flattening-and-tissue-elongation
#38
JOURNAL ARTICLE
Shun Li, Zong-Yuan Liu, Hao Li, Sijia Zhou, Jiaying Liu, Ningwei Sun, Kai-Fu Yang, Vanessa Dougados, Thomas Mangeat, Karine Belguise, Xi-Qiao Feng, Yiyao Liu, Xiaobo Wang
Actomyosin networks constrict cell area and junctions to alter cell and tissue shape. However, during cell expansion under mechanical stress, actomyosin networks are strengthened and polarized to relax stress. Thus, cells face a conflicting situation between the enhanced actomyosin contractile properties and the expansion behaviour of the cell or tissue. To address this paradoxical situation, we study late Drosophila oogenesis and reveal an unusual epithelial expansion wave behaviour. Mechanistically, Rac1 and Rho1 integrate basal pulsatile actomyosin networks with ruffles and focal adhesions to increase and then stabilize basal area of epithelial cells allowing their flattening and elongation...
April 8, 2024: Nature Communications
https://read.qxmd.com/read/38588808/mitotic-spindle-positioning-protein-misp-preferentially-binds-to-aged-f-actin
#39
JOURNAL ARTICLE
E Angelo Morales, Gillian N Fitz, Matthew J Tyska
Actin bundling proteins crosslink filaments into polarized structures that shape and support membrane protrusions including filopodia, microvilli, and stereocilia. In the case of epithelial microvilli, mitotic spindle positioning protein (MISP) is an actin bundler that localizes specifically to the basal rootlets, where the pointed ends of core bundle filaments converge. Previous studies established that MISP is prevented from binding more distal segments of the core bundle by competition with other actin binding proteins...
April 6, 2024: Journal of Biological Chemistry
https://read.qxmd.com/read/38587458/caskin2-is-a-novel-talin-and-abi1-binding-protein-that-promotes-cell-motility
#40
JOURNAL ARTICLE
Wei Wang, Paul Atherton, Maaike Kreft, Lisa Te Molder, Sabine van der Poel, Liesbeth Hoekman, Patrick Celie, Robbie P Joosten, Reinhard Fässler, Anastassis Perrakis, Arnoud Sonnenberg
Talin couples the actomyosin cytoskeleton to integrins and transmits tension to the extracellular matrix. Talin also interacts with numerous additional proteins capable of modulating the actin-integrin linkage and thus downstream mechanosignaling cascades. Here, we demonstrate that the scaffold protein Caskin2 interacts directly with the R8 domain of talin through its C-terminal LD motif. Caskin2 also associates with the WAVE Regulatory Complex to promote cell migration in an Abi1-dependent manner. Furthermore, we demonstrate that the Caskin2-Abi1 interaction is regulated by growth factor-induced phosphorylation of Caskin2 on serine 878...
April 8, 2024: Journal of Cell Science
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