keyword
https://read.qxmd.com/read/38602634/unveiling-the-molecular-networks-underlying-cellular-impairment-in-saccharomyces-cerevisiae-investigating-the-effects-of-magnesium-oxide-nanoparticles-on-cell-wall-integrity-and-endoplasmic-reticulum-stress-response
#1
JOURNAL ARTICLE
Shraddha Chauhan, Raghuvir Singh Tomar
Nanoparticles, particularly magnesium oxide nanoparticles (MgO-NPs), are increasingly utilized in various fields, yet their potential impact on cellular systems remains a topic of concern. This study aimed to comprehensively investigate the molecular mechanisms underlying MgO-NP-induced cellular impairment in Saccharomyces cerevisiae, with a focus on cell wall integrity, endoplasmic reticulum (ER) stress response, mitochondrial function, lipid metabolism, autophagy, and epigenetic alterations. MgO-NPs were synthesized through a chemical reduction method, characterized for morphology, size distribution, and elemental composition...
April 11, 2024: Environmental Science and Pollution Research International
https://read.qxmd.com/read/38419048/engineering-styrene-biosynthesis-designing-a-functional-trans-cinnamic-acid-decarboxylase-in-pseudomonas
#2
JOURNAL ARTICLE
Ana García-Franco, Patricia Godoy, Estrella Duque, Juan L Ramos
We are interested in converting second generation feedstocks into styrene, a valuable chemical compound, using the solvent-tolerant Pseudomonas putida DOT-T1E as a chassis. Styrene biosynthesis takes place from L-phenylalanine in two steps: firstly, L-phenylalanine is converted into trans-cinnamic acid (tCA) by PAL enzymes and secondly, a decarboxylase yields styrene. This study focuses on designing and synthesizing a functional trans-cinnamic acid decarboxylase in Pseudomonas putida. To achieve this, we utilized the "wholesale" method, involving deriving two consensus sequences from multi-alignments of homologous yeast ferulate decarboxylase FDC1 sequences with > 60% and > 50% identity, respectively...
February 28, 2024: Microbial Cell Factories
https://read.qxmd.com/read/38072356/engineering-yarrowia-lipolytica-for-sustainable-ricinoleic-acid-production-a-pathway-to-free-fatty-acid-synthesis
#3
JOURNAL ARTICLE
Kwanghyun Park, Ji-Sook Hahn
Ricinoleic acid (C18:1-OH, RA) is a valuable hydroxy fatty acid with versatile applications. The current industrial source of RA relies on the hydrolysis of castor bean oil. However, the coexistence of the toxic compound ricin and the unstable supply of this plant have led to an exploration of promising alternatives: generating RA in heterologous plants or microorganisms. In this study, we engineered the oleaginous yeast Yarrowia lipolytica to produce RA in the form of free fatty acids (FFA). First, we overexpressed fungal Δ12 oleate hydroxylase gene (CpFAH12) from Claviceps purpurea while deleting genes related to fatty acid degradation (MEF1 and PEX10) and oleic acid desaturation (FAD2)...
December 8, 2023: Metabolic Engineering
https://read.qxmd.com/read/37175419/immunomodulatory-effects-of-the-pea-defensin-psd1-in-the-caco-2-immune-cells-co-culture-upon-candida-albicans-infection
#4
JOURNAL ARTICLE
Ivan V Bogdanov, Serafima I Fateeva, Alexander D Voropaev, Tatiana V Ovchinnikova, Ekaterina I Finkina
Candidiasis is one of the most common fungal diseases that can pose a threat to life in immunodeficient individuals, particularly in its disseminated form. Not only fungal invasion but also fatal infection-related inflammation are common causes of systemic candidiasis. In this study, we investigated in vitro immunomodulatory properties of the antifungal pea defensin Psd1 upon Candida albicans infection. Using the real-time PCR, we showed that Psd1 inhibited the antimicrobial peptide HBD-2 and pro-inflammatory cytokines IL-1 and IL-8 downregulation at mRNA level in epithelium cells caused by C...
April 23, 2023: International Journal of Molecular Sciences
https://read.qxmd.com/read/36377885/two-different-phospholipases-c-isc1-and-pgc1-cooperate-to-regulate-mitochondrial-function
#5
JOURNAL ARTICLE
Maria Balazova, Petra Vesela, Lenka Babelova, Ivana Durisova, Paulina Kanovicova, Jakub Zahumensky, Jan Malinsky
The absence of Isc1, the yeast homologue of mammalian neutral sphingomyelinase type 2, leads to severe mitochondrial dysfunction. We show that the deletion of another type C phospholipase, the phosphatidylglycerol (PG)-specific phospholipase Pgc1, rescues this defect. Phosphatidylethanolamine (PE) levels and cytochrome c oxidase activity, which were reduced in isc1 Δ cells, were restored to wild-type levels in the pgc1 Δ isc1 Δ mutant. The Pgc1 substrate PG inhibited the in vitro activities of Isc1 and the phosphatidylserine decarboxylase Psd1, an enzyme crucial for PE biosynthesis...
November 15, 2022: Microbiology Spectrum
https://read.qxmd.com/read/35808467/selection-of-the-best-set-of-features-for-semg-based-hand-gesture-recognition-applying-a-cnn-architecture
#6
JOURNAL ARTICLE
Jorge Arturo Sandoval-Espino, Alvaro Zamudio-Lara, José Antonio Marbán-Salgado, J Jesús Escobedo-Alatorre, Omar Palillero-Sandoval, J Guadalupe Velásquez-Aguilar
The classification of surface myoelectric signals (sEMG) remains a great challenge when focused on its implementation in an electromechanical hand prosthesis, due to its nonlinear and stochastic nature, as well as the great difference between models applied offline and online. In this work, the selection of the set of the features that allowed us to obtain the best results for the classification of this type of signals is presented. In order to compare the results obtained, the Nina PRO DB2 and DB3 databases were used, which contain information on 50 different movements of 40 healthy subjects and 11 amputated subjects, respectively...
June 30, 2022: Sensors
https://read.qxmd.com/read/35554482/the-mitochondrial-pe-synthase-psd1-moonlights-at-er-subdomains-to-promote-ld-biogenesis
#7
JOURNAL ARTICLE
Jonathan Friedman, Mehmet O Gok, Natalie O Speer, Mike Henne
The asymmetric distribution of phospholipids in membranes is a fundamental principle of cellular compartmentalization and organization and is a crucial factor regulating organelle shape and biogenesis. Phosphatidylethanolamine (PE), a nonbilayer phospholipid that generates negative membrane curvature, has many cellular roles, including regulating mitochondrial architecture and lipidation of the autophagy factor LC3. Previously, we demonstrated in budding yeast that the PE synthase Psd1, which canonically operates on the mitochondrial inner membrane, unexpectedly also localizes to the ER...
May 2022: FASEB Journal: Official Publication of the Federation of American Societies for Experimental Biology
https://read.qxmd.com/read/34818062/er-localized-phosphatidylethanolamine-synthase-plays-a-conserved-role-in-lipid-droplet-formation
#8
JOURNAL ARTICLE
Mehmet Oguz Gok, Natalie Ortiz Speer, W Mike Henne, Jonathan R Friedman
The asymmetric distribution of phospholipids in membranes is a fundamental principle of cellular compartmentalization and organization. Phosphatidylethanolamine (PE), a nonbilayer phospholipid that contributes to organelle shape and function, is synthesized at several subcellular localizations via semi-redundant pathways. Previously, we demonstrated in budding yeast that the PE synthase Psd1, which primarily operates on the mitochondrial inner membrane, is additionally targeted to the ER. While ER-localized Psd1 is required to support cellular growth in the absence of redundant pathways, its physiological function is unclear...
November 24, 2021: Molecular Biology of the Cell
https://read.qxmd.com/read/34572064/porin-1-modulates-autophagy-in-yeast
#9
JOURNAL ARTICLE
Filomena Broeskamp, Elizabeth S M Edrich, Oskar Knittelfelder, Lisa Neuhaus, Thorsten Meyer, Jonas Heyden, Lukas Habernig, Florian Kreppel, Campbell W Gourlay, Patrick Rockenfeller
Autophagy is a cellular recycling program which efficiently reduces the cellular burden of ageing. Autophagy is characterised by nucleation of isolation membranes, which grow in size and further expand to form autophagosomes, engulfing cellular material to be degraded by fusion with lysosomes (vacuole in yeast). Autophagosomal membranes do not bud from a single cell organelle, but are generated de novo. Several lipid sources for autophagosomal membranes have been identified, but the whole process of their generation is complex and not entirely understood...
September 14, 2021: Cells
https://read.qxmd.com/read/33999504/cantharidin-downregulates-psd1-expression-and-inhibits-autophagic-flux-in-yeast-cells
#10
JOURNAL ARTICLE
Swati Swagatika, Raghuvir Singh Tomar
Cantharidin is a terpenoid compound of insect origin, naturally produced by male blister beetles as an anti-predatory mechanism. Cantharidin has anticancer properties, which are attributed to its ability to induce cell cycle arrest, DNA damage, MAPK signalling pathway and apoptosis. Cantharidin has been reported to induce apoptosis in triple-negative breast cancer cells by suppressing autophagy via downregulation of Beclin 1 expression and autophagosome formation. However, it remains unclear which stage of the autophagic pathway is targeted by cantharidin...
May 17, 2021: FEBS Open Bio
https://read.qxmd.com/read/33722607/choline-restores-respiration-in-psd1-deficient-yeast-by-replenishing-mitochondrial-phosphatidylethanolamine
#11
JOURNAL ARTICLE
Donna M Iadarola, Alaumy Joshi, Cameron B Caldwell, Vishal M Gohil
Phosphatidylethanolamine (PE) is essential for mitochondrial respiration in yeast Saccharomyces cerevisiae, whereas the most abundant mitochondrial phospholipid, phosphatidylcholine (PC), is largely dispensable. Surprisingly, choline (Cho), which is a biosynthetic precursor of PC, has been shown to rescue the respiratory growth of mitochondrial PE deficient yeast; however, the mechanism underlying this rescue has remained unknown. Using a combination of yeast genetics, lipid biochemistry, and cell biological approaches, we uncover the mechanism by showing that Cho rescues mitochondrial respiration by partially replenishing mitochondrial PE levels in yeast cells lacking the mitochondrial PE-biosynthetic enzyme Psd1...
March 12, 2021: Journal of Biological Chemistry
https://read.qxmd.com/read/33718843/impaired-phosphatidylethanolamine-metabolism-activates-a-reversible-stress-response-that-detects-and-resolves-mutant-mitochondrial-precursors
#12
JOURNAL ARTICLE
Pingdewinde N Sam, Elizabeth Calzada, Michelle Grace Acoba, Tian Zhao, Yasunori Watanabe, Anahita Nejatfard, Jonathan C Trinidad, Timothy E Shutt, Sonya E Neal, Steven M Claypool
Phosphatidylethanolamine (PE) made in mitochondria has long been recognized as an important precursor for phosphatidylcholine production that occurs in the endoplasmic reticulum (ER). Recently, the strict mitochondrial localization of the enzyme that makes PE in the mitochondrion, phosphatidylserine decarboxylase 1 (Psd1), was questioned. Since a dual localization of Psd1 to the ER would have far-reaching implications, we initiated our study to independently re-assess the subcellular distribution of Psd1. Our results support the unavoidable conclusion that the vast majority, if not all, of functional Psd1 resides in the mitochondrion...
March 19, 2021: IScience
https://read.qxmd.com/read/33283454/phosphatidylserine-flux-into-mitochondria-unveiled-by-organelle-targeted-escherichia-coli-phosphatidylserine-synthase-pssa
#13
JOURNAL ARTICLE
Hiroya Shiino, Shiina Furuta, Rieko Kojima, Keisuke Kimura, Toshiya Endo, Yasushi Tamura
Most phospholipids are synthesized in the endoplasmic reticulum and distributed to other cellular membranes. Although the vesicle transport contributes to the phospholipid distribution among the endomembrane system, exactly how phospholipids are transported to, from and between mitochondrial membranes remains unclear. To gain insights into phospholipid transport routes into mitochondria, we expressed the Escherichia coli phosphatidylserine synthase PssA in various membrane compartments with distinct membrane topologies in yeast cells lacking a sole phosphatidylserine synthase (Cho1)...
December 7, 2020: FEBS Journal
https://read.qxmd.com/read/32225552/testing-the-mid-spatial-frequency-error-of-a-large-aperture-long-focal-length-lens-with-cgh
#14
JOURNAL ARTICLE
Jian-Peng Cui, Ning Zhang, Jie Liu, Di-Long Wu, Hua Xu, Ding-Yao Yan, Ping Ma
We present the use of a computer-generated hologram (CGH) to test the mid-spatial frequency error of a large aperture long-focal-length lens. In order to verify this test approach, a 450 mm × 450 mm reflective CGH is designed and fabricated for testing the 440 mm × 440 mm spatial filter lens. Both 0th and 1st order diffraction wavefront of CGH are measured, and the 0th order diffraction wavefront is used to calibrate the substrate error. The mid-spatial frequency wavefront error caused by the CGH fabrication errors are evaluated using the binary linear grating model and power spectral density (PSD) theory...
March 30, 2020: Optics Express
https://read.qxmd.com/read/31792076/pathways-that-synthesize-phosphatidylethanolamine-impact-c-albicans-hyphal-length-and-cell-wall-composition-through-transcriptional-and-post-transcriptional-mechanisms
#15
JOURNAL ARTICLE
Robert N Tams, Andrew S Wagner, Joseph W Jackson, Eric R Gann, Timothy E Sparer, Todd B Reynolds
Candida albicans is a leading cause of systemic bloodstream infections and synthesis of the phospholipid phosphatidylethanolamine (PE) is required for virulence. The psd1Δ/Δ psd2Δ/Δ mutant, which cannot synthesize PE by the CDP-DAG pathway, is avirulent in the mouse model of systemic candidiasis. Similarly, an ept1Δ/Δ mutant, which cannot produce PE by the Kennedy pathway, exhibits decreased kidney fungal burden in systemically infected mice. Conversely, overexpression of EPT1 results in a hypervirulent phenotype in this model...
December 2, 2019: Infection and Immunity
https://read.qxmd.com/read/31775775/engineering-integrative-vectors-based-on-phage-site-specific-recombination-mechanism-for-lactococcus-lactis
#16
JOURNAL ARTICLE
Innanurdiani Koko, Adelene Ai-Lian Song, Mas Jaffri Masarudin, Raha Abdul Rahim
BACKGROUND: Site-specific integration system allows foreign DNA to be integrated into the specific site of the host genome, enabling stable expression of heterologous protein. In this study, integrative vectors for secretion and surface display of proteins were constructed based on a lactococcal phage TP901-1 integrating system. RESULTS: The constructed integration system comprises of a lactococcal promoter (PnisA or P170 ), phage attachment site (attP) from bacteriophage TP901-1, a signal peptide (USP45 or SPK1) for translocation of the target protein, and a PrtP344 anchor domain in the case of the integrative vectors for surface display...
November 27, 2019: BMC Biotechnology
https://read.qxmd.com/read/31483742/the-mitochondrial-intermembrane-space-facing-proteins-mcp2-and-tgl2-are-involved-in-yeast-lipid-metabolism
#17
JOURNAL ARTICLE
Fenja Odendall, Sandra Backes, Takashi Tatsuta, Uri Weill, Maya Schuldiner, Thomas Langer, Johannes M Herrmann, Doron Rapaport, Kai Stefan Dimmer
Mitochondria are unique organelles harboring two distinct membranes, the mitochondrial inner and outer membrane (MIM and MOM, respectively). Mitochondria comprise only a subset of metabolic pathways for the synthesis of membrane lipids, therefore most lipid species and their precursors have to be imported from other cellular compartments. One of such import processes is mediated by the ER mitochondria encounter structure (ERMES) complex. Both mitochondrial membranes surround the hydrophilic intermembrane space (IMS)...
September 4, 2019: Molecular Biology of the Cell
https://read.qxmd.com/read/31093957/phospholipid-biosynthesis-disruption-renders-the-yeast-cells-sensitive-to-antifungals
#18
JOURNAL ARTICLE
Deepika Kundu, Saif Hameed, Zeeshan Fatima, Ritu Pasrija
To understand the role of phospholipids on Cdr1p (drug exporter)-mediated drug resistance in yeast, the phospholipids biosynthesis genes PSD1, PSD2, CHO2, and OPI3 were deleted in a strain of Saccharomyces cerevisiae already overexpressing Cdr1-GFP of Candida albicans as a heterologous system. The effect of phospholipids biosynthesis gene deletion was analyzed on Cdr1p-GFP-mediated drug resistance as well as its localization. The results indicate that phospholipids biosynthesis disruption makes the cell sensitive to several drugs including fluconazole (FLC), with Δpsd1/Cdr1-GFP being worst affected...
May 15, 2019: Folia Microbiologica
https://read.qxmd.com/read/30958856/suppression-of-respiratory-growth-defect-of-mitochondrial-phosphatidylserine-decarboxylase-deficient-mutant-by-overproduction-of-sfh1-a-sec14-homolog-in-yeast
#19
JOURNAL ARTICLE
Aya Mizuike, Shingo Kobayashi, Takashi Rikukawa, Akinori Ohta, Hiroyuki Horiuchi, Ryouichi Fukuda
Interorganelle phospholipid transfer is critical for eukaryotic membrane biogenesis. In the yeast Saccharomyces cerevisiae, phosphatidylserine (PS) synthesized by PS synthase, Pss1, in the endoplasmic reticulum (ER) is decarboxylated to phosphatidylethanolamine (PE) by PS decarboxylase, Psd1, in the ER and mitochondria or by Psd2 in the endosome, Golgi, and/or vacuole, but the mechanism of interorganelle PS transport remains to be elucidated. Here we report that Sfh1, a member of Sec14 family proteins of S...
2019: PloS One
https://read.qxmd.com/read/30926815/phosphatidylethanolamine-made-in-the-inner-mitochondrial-membrane-is-essential-for-yeast-cytochrome-bc-1-complex-function
#20
JOURNAL ARTICLE
Elizabeth Calzada, Erica Avery, Pingdewinde N Sam, Arnab Modak, Chunyan Wang, J Michael McCaffery, Xianlin Han, Nathan N Alder, Steven M Claypool
Of the four separate PE biosynthetic pathways in eukaryotes, one occurs in the mitochondrial inner membrane (IM) and is executed by phosphatidylserine decarboxylase (Psd1). Deletion of Psd1 is lethal in mice and compromises mitochondrial function. We hypothesize that this reflects inefficient import of non-mitochondrial PE into the IM. Here, we test this by re-wiring PE metabolism in yeast by re-directing Psd1 to the outer mitochondrial membrane or the endomembrane system and show that PE can cross the IMS in both directions...
March 29, 2019: Nature Communications
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