keyword
https://read.qxmd.com/read/38645068/orthofusion-a-super-resolution-algorithm-to-fuse-orthogonal-ct-volumes
#21
Rebecca E Abbott, Alain Nishimwe, Hadi Wiputra, Ryan E Breighner, Arin M Ellingson
OrthoFusion, an intuitive super-resolution algorithm, is presented in this study to enhance the spatial resolution of clinical CT volumes. The efficacy of OrthoFusion is evaluated, relative to high-resolution CT volumes (ground truth), by assessing image volume and derived bone morphological similarity, as well as its performance in specific applications in 2D-3D registration tasks. Results demonstrate that OrthoFusion significantly reduced segmentation time, while improving structural similarity of bone images and relative accuracy of derived bone model geometries...
April 3, 2024: Research Square
https://read.qxmd.com/read/38645064/predicting-chromatin-conformation-contact-maps
#22
Alan Min, Jacob Schreiber, Anshul Kundaje, William Stafford Noble
Over the past 15 years, a variety of next-generation sequencing assays have been developed for measuring the 3D conformation of DNA in the nucleus. Each of these assays gives, for a particular cell or tissue type, a distinct picture of 3D chromatin architecture. Accordingly, making sense of the relationship between genome structure and function requires teasing apart two closely related questions: how does chromatin 3D structure change from one cell type to the next, and how do different measurements of that structure differ from one another, even when the two assays are carried out in the same cell type? In this work, we assemble a collection of chromatin 3D datasets-each represented as a 2D contact map- spanning multiple assay types and cell types...
April 14, 2024: bioRxiv
https://read.qxmd.com/read/38644993/multi-niche-human-bone-marrow-on-a-chip-for-studying-the-interactions-of-adoptive-car-t-cell-therapies-with-multiple-myeloma
#23
Delta Ghoshal, Ingrid Petersen, Rachel Ringquist, Liana Kramer, Eshant Bhatia, Thomas Hu, Ariane Richard, Reda Park, Jenna Corbin, Savi Agarwal, Abel Thomas, Sebastian Ramirez, Jacob Tharayil, Emma Downey, Frank Ketchum, Abigail Ochal, Neha Sonthi, Sagar Lonial, James N Kochenderfer, Reginald Tran, Mandy Zhu, Wilbur A Lam, Ahmet F Coskun, Krishnendu Roy
UNLABELLED: Multiple myeloma (MM), a cancer of bone marrow plasma cells, is the second-most common hematological malignancy. However, despite immunotherapies like chimeric antigen receptor (CAR)-T cells, relapse is nearly universal. The bone marrow (BM) microenvironment influences how MM cells survive, proliferate, and resist treatment. Yet, it is unclear which BM niches give rise to MM pathophysiology. Here, we present a 3D microvascularized culture system, which models the endosteal and perivascular bone marrow niches, allowing us to study MM-stroma interactions in the BM niche and model responses to therapeutic CAR-T cells...
April 12, 2024: bioRxiv
https://read.qxmd.com/read/38644903/3d-human-pose-data-augmentation-using-generative-adversarial-networks-for-robotic-assisted-movement-quality-assessment
#24
JOURNAL ARTICLE
Xuefeng Wang, Yang Mi, Xiang Zhang
In the realm of human motion recognition systems, the augmentation of 3D human pose data plays a pivotal role in enriching and enhancing the quality of original datasets through the generation of synthetic data. This augmentation is vital for addressing the current research gaps in diversity and complexity, particularly when dealing with rare or complex human movements. Our study introduces a groundbreaking approach employing Generative Adversarial Networks (GANs), coupled with Support Vector Machine (SVM) and DenseNet, further enhanced by robot-assisted technology to improve the precision and efficiency of data collection...
2024: Frontiers in Neurorobotics
https://read.qxmd.com/read/38644855/ai-based-tool-for-early-detection-of-alzheimer-s-disease
#25
JOURNAL ARTICLE
Shafiq Ul Rehman, Noha Tarek, Caroline Magdy, Mohammed Kamel, Mohammed Abdelhalim, Alaa Melek, Lamees N Mahmoud, Ibrahim Sadek
In the context of Alzheimer's disease (AD), timely identification is paramount for effective management, acknowledging its chronic and irreversible nature, where medications can only impede its progression. Our study introduces a holistic solution, leveraging the hippocampus and the VGG16 model with transfer learning for early AD detection. The hippocampus, a pivotal early affected region linked to memory, plays a central role in classifying patients into three categories: cognitively normal (CN), representing individuals without cognitive impairment; mild cognitive impairment (MCI), indicative of a subtle decline in cognitive abilities; and AD, denoting Alzheimer's disease...
April 30, 2024: Heliyon
https://read.qxmd.com/read/38644850/surrogate-metamodels-from-digital-image-correlation-for-testing-high-performance-composite-vessels
#26
JOURNAL ARTICLE
Javier Pisonero, Manuel Rodríguez-Martín, Jose G Fueyo, Diego González-Aguilera, Roberto García-Martín
In this work, a workflow has been developed for the generation of surrogate metamodels to predict and evaluate failure with a confidence above 95 % in initial service conditions of high-performance cylindrical vessels manufactured in composites by Roll Wrapping technology. Currently, there is no specific testing standardization for this type of vessel and to fill this gap probabilistic numerical models were developed, performed by the Finite Element Method, fed with the material characteristics obtained experimentally by 2D digital image correlation from flat specimens...
April 30, 2024: Heliyon
https://read.qxmd.com/read/38644848/improving-radiomic-modeling-for-the-identification-of-symptomatic-carotid-atherosclerotic-plaques-using-deep-learning-based-3d-super-resolution-ct-angiography
#27
JOURNAL ARTICLE
Lingjie Wang, Tiedan Guo, Li Wang, Wentao Yang, Jingying Wang, Jianlong Nie, Jingjing Cui, Pengbo Jiang, Junlin Li, Hua Zhang
RATIONALE AND OBJECTIVES: Radiomic models based on normal-resolution (NR) computed tomography angiography (CTA) images can fail to distinguish between symptomatic and asymptomatic carotid atherosclerotic plaques. This study aimed to explore the effectiveness of a deep learning-based three-dimensional super-resolution (SR) CTA radiomic model for improved identification of symptomatic carotid atherosclerotic plaques. MATERIALS AND METHODS: A total of 193 patients with carotid atherosclerotic plaques were retrospectively enrolled and allocated into either a symptomatic (n = 123) or an asymptomatic (n = 70) groups...
April 30, 2024: Heliyon
https://read.qxmd.com/read/38644644/design-and-extrusion-based-3d-printing-of-continuous-fiber-composites-status-challenges-and-opportunities
#28
REVIEW
Kai Yu, Martin L Dunn
This perspective article summarizes recent advancements in extrusion-based 3D printing of continuous fiber-reinforced polymers (CFRPs). It focuses on manufacturing techniques and computational design methodologies. While fused deposition modeling has been the primary method for printing thermoplastic CFRPs, recent innovations have enabled the printing of thermoset CFRPs using direct ink writing or similar techniques. These printing processes are also integrated with robotic arms to dramatically enhance manufacturing capabilities...
April 21, 2024: Langmuir: the ACS Journal of Surfaces and Colloids
https://read.qxmd.com/read/38644364/tumor-growth-arrest-effect-of-tetrahydroquinazoline-derivative-human-topoisomerase-ii-alpha-inhibitor-in-hpv-negative-head-and-neck-squamous-cell-carcinoma
#29
JOURNAL ARTICLE
Patrizia Sarogni, Nicoletta Brindani, Agata Zamborlin, Alessandra Gonnelli, Michele Menicagli, Ana Katrina Mapanao, Federico Munafò, Marco De Vivo, Valerio Voliani
Oral malignancies continue to have severe morbidity with less than 50% long-term survival despite the advancement in the available therapies. There is a persisting demand for new approaches to establish more efficient strategies for their treatment. In this regard, the human topoisomerase II (topoII) enzyme is a validated chemotherapeutics target, as topoII regulates vital cellular processes such as DNA replication, transcription, recombination, and chromosome segregation in cells. TopoII inhibitors are currently used to treat some neoplasms such as breast and small cells lung carcinomas...
April 21, 2024: Scientific Reports
https://read.qxmd.com/read/38644231/single-missing-molar-with-wide-mesiodistal-length-restored-using-a-single-or-double-implant-supported-crown-a-self-controlled-case-report-and-3d-finite-element-analysis
#30
JOURNAL ARTICLE
Iohong Wong, Zhengchuan Zhang, Xiaobing Dang, Xiaoran Yu, Xiaoxuan Lin, Yiming Li, Feilong Deng, Ruogu Xu
PURPOSE: Based on a self-controlled case, this study evaluated the finite element analysis (FEA) results of a single missing molar with wide mesiodistal length (MDL) restored by a single or double implant-supported crown. METHODS: A case of a missing bilateral mandibular first molar with wide MDL was restored using a single or double implant-supported crown. The implant survival and peri-implant bone were compared. FEA was conducted in coordination with the case using eight models with different MDLs (12, 13, 14, and 15 mm)...
April 19, 2024: Journal of Prosthodontic Research
https://read.qxmd.com/read/38643950/dysregulation-of-adipogenesis-and-disrupted-lipid-metabolism-by-the-antidepressants-citalopram-and-sertraline
#31
JOURNAL ARTICLE
Deniz Bozdag, Jeroen van Voorthuizen, Nikita Korpel, Sander Lentz, Hande Gurer-Orhan, Jorke H Kamstra
Selective Serotonin Reuptake Inhibitors (SSRIs) are widely used medications for the treatment of major depressive disorder. However, long-term SSRI use has been associated with weight gain and altered lipid profiles. These findings suggest that SSRIs may have negative effects on metabolism. Exposure to certain chemicals called 'obesogens' are known to promote lipid accumulation and obesity by modulating adipogenesis. Here, we investigated whether citalopram (CIT) and sertraline (SER) interfere with the process of adipogenesis, using human mesenchymal stem cells (MSCs) in a 2D and a 3D model...
April 19, 2024: Toxicology and Applied Pharmacology
https://read.qxmd.com/read/38643558/uncertainties-in-ocular-proton-planning-and-their-impact-on-required-margins
#32
JOURNAL ARTICLE
Jörg Wulff, Benjamin Koska, Dalia Ahmad Khalil, Ronald Richter, Claus Maximilian Bäcker, Christian Bäumer, Andreas Foerster, Nikolaos E Bechrakis, Beate Timmermann
PURPOSE: To review required margins in ocular proton therapy (OPT) based on an uncertainty estimation and to compare them with widely used values. Further, uncertainties when using registered funduscopy images in the 3D model is investigated. METHODS: An uncertainty budget in planning and delivery was defined to determine required aperture and range margins. Setup uncertainties were considered for a cohort of treated patients and tested in a worst-case estimation...
April 20, 2024: Physica Medica: PM
https://read.qxmd.com/read/38643551/hybrid-dual-mean-teacher-network-with-double-uncertainty-guidance-for-semi-supervised-segmentation-of-magnetic-resonance-images
#33
JOURNAL ARTICLE
Jiayi Zhu, Bart Bolsterlee, Brian V Y Chow, Yang Song, Erik Meijering
Semi-supervised learning has made significant progress in medical image segmentation. However, existing methods primarily utilize information from a single dimensionality, resulting in sub-optimal performance on challenging magnetic resonance imaging (MRI) data with multiple segmentation objects and anisotropic resolution. To address this issue, we present a Hybrid Dual Mean-Teacher (HD-Teacher) model with hybrid, semi-supervised, and multi-task learning to achieve effective semi-supervised segmentation. HD-Teacher employs a 2D and a 3D mean-teacher network to produce segmentation labels and signed distance fields from the hybrid information captured in both dimensionalities...
April 17, 2024: Computerized Medical Imaging and Graphics: the Official Journal of the Computerized Medical Imaging Society
https://read.qxmd.com/read/38643183/ras-dataset-a-3d-cardiac-lge-mri-dataset-for-segmentation-of-right-atrial-cavity
#34
JOURNAL ARTICLE
Jinwen Zhu, Jieyun Bai, Zihao Zhou, Yaqi Liang, Zhiting Chen, Xiaoming Chen, Xiaoshen Zhang
The current challenge in effectively treating atrial fibrillation (AF) stems from a limited understanding of the intricate structure of the human atria. The objective and quantitative interpretation of the right atrium (RA) in late gadolinium-enhanced magnetic resonance imaging (LGE-MRI) scans relies heavily on its precise segmentation. Leveraging the potential of artificial intelligence (AI) for RA segmentation presents a promising solution. However, the successful implementation of AI in this context necessitates access to a substantial volume of annotated LGE-MRI images for model training...
April 20, 2024: Scientific Data
https://read.qxmd.com/read/38643031/fabrication-of-a-cell-culture-scaffold-that-mimics-the-composition-and-structure-of-bone-marrow-extracellular-matrix
#35
JOURNAL ARTICLE
Ayana Yamaguchi, Yoshihide Hashimoto, Jun Negishi
Cell culture models that mimic tissue environments are useful for cell and extracellular matrix (ECM) function analysis. Decellularized tissues with tissue-specific ECM are expected to be applied as cell culture scaffolds, however, it is often difficult for seeded cells to permeate their structures. In this study, we evaluated the adhesion and proliferation of mouse fibroblasts seeded onto decellularized bone marrow scaffolds that we fabricated from adult and fetal porcine. Decellularized fetal bone marrow displays more cell attachment and faster cell proliferation than decellularized adult bone marrow...
April 19, 2024: Journal of Bioscience and Bioengineering
https://read.qxmd.com/read/38642931/preoperative-three-dimensional-modelling-and-virtual-reality-planning-aids-nephron-sparing-surgery-in-a-child-with-bilateral-wilms-tumour
#36
JOURNAL ARTICLE
Avijit Banerjee, Ramesh Babu, Dhaarani Jayaraman, Srinivas Chilukuri
Bilateral Wilms tumour (BWT) is a surgically challenging condition. Virtual reality (VR) reconstruction aids surgeons to foresee the anatomy ahead of Nephron Sparing Surgery (NSS). Three-dimensional (3D) visualisation improves the anatomical orientation of surgeons performing NSS. We herewith report a case of BWT where VR planning and 3D printing were used to aid NSS. Conventional imaging is often found to be inadequate while assessing the tumour-organ-vascular anatomy. Advances like VR and 3D printing help surgeons plan better for complex surgeries like bilateral NSS...
April 19, 2024: BMJ Case Reports
https://read.qxmd.com/read/38642651/3d-pose-estimation-to-detect-posture-transition-in-free-stall-housed-dairy-cows
#37
JOURNAL ARTICLE
Adrien Kroese, Moudud Alam, Elin Hernlund, David Berthet, Lena-Mari Tamminen, Nils Fall, Niclas Högberg
Free stall comfort is reflected in various indicators, including the ability for dairy cattle to display unhindered posture transition movements in the cubicles. To ensure farm animal welfare, it is instrumental for the farm management to be able to continuously monitor occurrences of abnormal motions. Advances in computer vision have enabled accurate kinematic measurements in several fields such as human, equine and bovine biomechanics. An important step upstream to measuring displacement during posture transitions is to determine that the behavior is accurately detected...
April 18, 2024: Journal of Dairy Science
https://read.qxmd.com/read/38642628/mrunet-3d-a-multi-stride-residual-3d-unet-for-lung-nodule-segmentation
#38
JOURNAL ARTICLE
Ronald Bbosa, Hao Gui, Fei Luo, Feng Liu, Kafui Efio-Akolly, Yi-Ping Phoebe Chen
Obtaining an accurate segmentation of the pulmonary nodules in computed tomography (CT) images is challenging. This is due to: (1) the heterogeneous nature of the lung nodules; (2) comparable visual characteristics between the nodules and their surroundings. A robust multi-scale feature extraction mechanism that can effectively obtain multi-scale representations at a granular level can improve segmentation accuracy. As the most commonly used network in lung nodule segmentation, UNet, its variants, and other image segmentation methods lack this robust feature extraction mechanism...
April 18, 2024: Methods: a Companion to Methods in Enzymology
https://read.qxmd.com/read/38642123/novel-implant-design-for-comminuted-posterior-wall-acetabular-fractures
#39
JOURNAL ARTICLE
Carlos Domínguez-Barrios, Marco Antonio Altamirano-Cruz, Jorge Enrique Velarde-Bouche, Vincenzo Giordano
BACKGROUND: In recent years, the medical community has witnessed a notable increase in high-energy traumatic injuries, leading to a surge in complex fracture patterns that challenge existing treatment methodologies. Among these, the posterior approach to acetabular fractures stands out for offering direct visualization of the retro-acetabular surface, with current fixation methods relying on 3.5 mm low-profile reconstruction plates and various other implants. Despite the effectiveness of these methods, there is a burgeoning demand for a singular, adaptable implant that not only streamlines the surgical process but also optimizes patient outcomes...
April 20, 2024: European Journal of Orthopaedic Surgery & Traumatology: Orthopédie Traumatologie
https://read.qxmd.com/read/38641927/knotted-artificial-muscles-for-bio-mimetic-actuation-under-deepwater
#40
JOURNAL ARTICLE
Wenhui Chen, Dezhong Tong, Linghan Meng, Bowen Tan, Ruochen Lan, Qifeng Zhang, Huai Yang, Cong Wang, Ke Liu
Muscles featuring high frequency and high stroke linear actuation are essential for animals to achieve superior maneuverability, agility, and environmental adaptability. Artificial muscles are yet to match their biological counterparts, due to inferior actuation speed, magnitude, mode, or adaptability. Inspired by the hierarchical structure of natural muscles, we create artificial muscles that are powerful, responsive, robust, and adaptable. The artificial muscles consist of knots braided from 3D printed liquid crystal elastomer fibers and thin heating threads...
April 20, 2024: Advanced Materials
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