keyword
MENU ▼
Read by QxMD icon Read
search

plant metabolomics

keyword
https://www.readbyqxmd.com/read/28535746/de-novo-transcriptome-analysis-and-glucosinolate-profiling-in-watercress-nasturtium-officinale-r-br
#1
Jin Jeon, Sun Ju Bong, Jong Seok Park, Young-Kyu Park, Mariadhas Valan Arasu, Naif Abdullah Al-Dhabi, Sang Un Park
BACKGROUND: Watercress (Nasturtium officinale R. Br.) is an aquatic herb species that is a rich source of secondary metabolites such as glucosinolates. Among these glucosinolates, watercress contains high amounts of gluconasturtiin (2-phenethyl glucosinolate) and its hydrolysis product, 2-phennethyl isothiocyanate, which plays a role in suppressing tumor growth. However, the use of N. officinale as a source of herbal medicines is currently limited due to insufficient genomic and physiological information...
May 23, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28531195/livestock-metabolomics-and-the-livestock-metabolome-a-systematic-review
#2
Seyed Ali Goldansaz, An Chi Guo, Tanvir Sajed, Michael A Steele, Graham S Plastow, David S Wishart
Metabolomics uses advanced analytical chemistry techniques to comprehensively measure large numbers of small molecule metabolites in cells, tissues and biofluids. The ability to rapidly detect and quantify hundreds or even thousands of metabolites within a single sample is helping scientists paint a far more complete picture of system-wide metabolism and biology. Metabolomics is also allowing researchers to focus on measuring the end-products of complex, hard-to-decipher genetic, epigenetic and environmental interactions...
2017: PloS One
https://www.readbyqxmd.com/read/28530581/metabolic-phenotyping-of-various-tea-camellia-sinensis-l-cultivars-and-understanding-of-their-intrinsic-metabolism
#3
Hyang-Gi Ji, Yeong-Ran Lee, Min-Seuk Lee, Kyeong Hwan Hwang, Eun-Hee Kim, Jun Seong Park, Young-Shick Hong
Recently, we selected three tea (Camellia sinensis) cultivars that are rich in taste, epigallocatechin-3-O-gallate (EGCG) and epigallocatechin-3-O-(3-O-methyl)-gallate (EGCG3″Me) and then cultivated them through asexual propagation by cutting in the same region. In the present study, proton nuclear magnetic resonance ((1)H NMR)-based metabolomics was applied to characterize the metabotype and to understand the metabolic mechanism of these tea cultivars including wild type tea. Of the tea leaf metabolite variations, reverse associations of amino acid metabolism with catechin compound metabolism were found in the rich-taste, and EGCG- and EGCG3″Me-rich tea cultivars...
October 15, 2017: Food Chemistry
https://www.readbyqxmd.com/read/28521946/genomics-of-the-asian-rice-gall-midge-and-its-interactions-with-rice
#4
REVIEW
Deepak Kumar Sinha, Isha Atray, Ruchi Agarrwal, Jagadish Sanmallappa Bentur, Suresh Nair
Understanding virulence and manipulative strategies of gall formers will reveal new facets of plant defense and insect counter defense. Among the gall midges, the Asian rice gall midge (AGM) has emerged as a model for studies on plant-insect interactions. Data from several genomics, transcriptomics and metabolomics studies have revealed diverse strategies adopted by AGM to successfully invade the host while overcoming its defense. Adaptive skills of AGM transcend from its genomic and transcriptomic make-up...
February 2017: Current Opinion in Insect Science
https://www.readbyqxmd.com/read/28520864/from-chromatogram-to-analyte-to-metabolite-how-to-pick-horses-for-courses-from-the-massive-web-resources-for-mass-spectral-plant-metabolomics
#5
Leonardo Perez de Souza, Thomas Naake, Takayuki Tohge, Alisdair R Fernie
The grand challenge currently facing metabolomics is the expansion of the coverage of the metabolome from a minor percentage of the metabolic complement of the cell towards the level of coverage afforded by other post-genomic technologies such as transcriptomics and proteomics. In plants this problem is exacerbated by the sheer diversity of chemicals that constitute the metabolome with the number of metabolites in the plant kingdom generally being considered to be in excess of 200 000. In this review we focus on web-resources that can be exploited in order to improve analyte and ultimately metabolite identification and quantification...
May 17, 2017: GigaScience
https://www.readbyqxmd.com/read/28516140/comprehensive-list-of-metabolites-measured-by-di-fticr-mass-spectrometry-in-thyme-plants-with-contrasting-tolerance-to-drought
#6
Parviz Moradi, Brian Ford-Lloyd, Jeremy Pritchard
This article contains data related to the main research entitled "Metabolomic approach reveals the biochemical mechanisms underlying drought stress tolerance in Thyme" (Moradi et al., 2017) [1]. Two thyme populations with contrasting drought tolerance were subjected to long term water deficit. Leaf samples harvested at the end of stress period and bi-phasic extraction carried out to get polar and non-polar fractions. Extracted samples were analyzed through Direct Infusion FT-ICR mass spectrometry. Date files comprise of four separate tables for all the putatively identified metabolites and their intensities in watered and droughted plants...
June 2017: Data in Brief
https://www.readbyqxmd.com/read/28515731/ectopic-expression-of-cdf3-genes-in-tomato-enhances-biomass-production-and-yield-under-salinity-stress-conditions
#7
Begoña Renau-Morata, Rosa V Molina, Laura Carrillo, Jaime Cebolla-Cornejo, Manuel Sánchez-Perales, Stephan Pollmann, José Domínguez-Figueroa, Alba R Corrales, Jaume Flexas, Jesús Vicente-Carbajosa, Joaquín Medina, Sergio G Nebauer
Cycling Dof Factor (CDF) transcription factors (TFs) are involved in multiple processes related to plant growth and development. A member of this family, CDF3, has recently been linked in Arabidopsis to the regulation of primary metabolism and abiotic stress responses, but its role in crop production under stress is still unknown. In this study, we characterized tomato plants overexpressing the CDF3 genes from Arabidopsis and tomato and analyzed their effects on growth and yield under salinity, additionally gaining deeper insights into the molecular function of these TFs...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28510485/metabolomic-response-to-huanglongbing-role-of-carboxylic-compounds-in-citrus-sinensis-response-to-candidatus-liberibacter-asiaticus-and-its-vector-diaphorina-citri
#8
Nabil Killiny, Yasser Nehela
Huanglongbing, a destructive disease of citrus, is caused by the fastidious bacterium, Candidatus Liberibacter asiaticus (CLas), and transmitted by Asian citrus psyllid, Diaphorina citri. The impact of CLas-infection and/or D. citri-infestation on Valencia sweet orange (Citrus sinensis) leaf metabolites was investigated using GC-MS, followed by gene expression analysis for 37 genes involved in jasmonic acid (JA), salicylic acid (SA), and proline-glutamine pathways. The total amino acid abundance increased after CLas-infection, while the total fatty acids increased dramatically after infestation with D...
May 16, 2017: Molecular Plant-microbe Interactions: MPMI
https://www.readbyqxmd.com/read/28508929/untargeted-metabolomic-analysis-of-tomato-pollen-development-and-heat-stress-response
#9
Marine J Paupière, Florian Müller, Hanjing Li, Ivo Rieu, Yury M Tikunov, Richard G F Visser, Arnaud G Bovy
Pollen development metabolomics. Developing pollen is among the plant structures most sensitive to high temperatures, and a decrease in pollen viability is often associated with an alteration of metabolite content. Most of the metabolic studies of pollen have focused on a specific group of compounds, which limits the identification of physiologically important metabolites. To get a better insight into pollen development and the pollen heat stress response, we used a liquid chromatography-mass spectrometry platform to detect secondary metabolites in pollen of tomato (Solanum lycopersicum L...
May 16, 2017: Plant Reproduction
https://www.readbyqxmd.com/read/28504920/silicon-s-role-in-abiotic-and-biotic-plant-stresses
#10
Daniel Debona, Fabrício A Rodrigues, Lawrence E Datnoff
Silicon (Si) plays a pivotal role in the nutritional status of a wide variety of monocot and dicot plant species and helps them, whether direct or indirectly, counteract abiotic and/or biotic stresses. In general, plants with a high root or shoot Si concentration are less prone to suffer from pest attack and exhibit enhanced tolerance to abiotic stresses such as drought, low temperature, or metal toxicity. However, the most notable effect of Si is the reduction in the intensities of a number of seedborne, soilborne, and foliar diseases in many economically important crops that are caused by biotrophic, hemibiotrophic, and necrotrophic plant pathogens...
May 15, 2017: Annual Review of Phytopathology
https://www.readbyqxmd.com/read/28503089/anticancer-chemodiversity-of-ranunculaceae-medicinal-plants-molecular-mechanisms-and-functions
#11
REVIEW
Da-Cheng Hao, Chun-Nian He, Jie Shen, Pei-Gen Xiao
The buttercup family, Ranunculaceae, comprising more than 2,200 species in at least 62 genera, mostly herbs, has long been used in folk medicine and worldwide ethnomedicine since the beginning of human civilization. Various medicinal phytometabolites have been found in Ranunculaceae plants, many of which, such as alkaloids, terpenoids, saponins, and polysaccharides, have shown anti-cancer activities in vitro and in vivo. Most concerns have been raised for two epiphany molecules, the monoterpene thymoquinone and the isoquinoline alkaloid berberine...
February 2017: Current Genomics
https://www.readbyqxmd.com/read/28499913/integration-of-gel-based-and-gel-free-proteomic-data-for-functional-analysis-of-proteins-through-soybean-proteome-database
#12
Setsuko Komatsu, Xin Wang, Xiaojian Yin, Yohei Nanjo, Hajime Ohyanagi, Katsumi Sakata
The Soybean Proteome Database (SPD) stores data on soybean proteins obtained with gel-based and gel-free proteomic techniques. The database was constructed to provide information on proteins for functional analyses. The majority of the data is focused on soybean (Glycine max 'Enrei'). The growth and yield of soybean are strongly affected by environmental stresses such as flooding. The database was originally constructed using data on soybean proteins separated by two-dimensional polyacrylamide gel electrophoresis, which is a gel-based proteomic technique...
May 9, 2017: Journal of Proteomics
https://www.readbyqxmd.com/read/28499256/from-common-to-rare-zingiberaceae-plants-a-metabolomics-study-using-gc-ms
#13
Gina B Barbosa, Nirupama S Jayasinghe, Siria H A Natera, Ellen D Inutan, Nonita P Peteros, Ute Roessner
Zingiberaceae plants, commonly known as gingers, have been popular for their medicinal and culinary uses since time immemorial. In spite of their numerous health-promoting applications, many Zingiberaceae plants still receive no scientific attention. Moreover, existing reports mostly focused only on the Zingiberaceae rhizomes. Here, untargeted metabolite profiling using Gas Chromatography - Mass Spectrometry (GC-MS) was used to compare the metabolic composition of leaves and rhizomes of the more common gingers, Zingiber officinale Rosc...
May 9, 2017: Phytochemistry
https://www.readbyqxmd.com/read/28495892/lux-bacterial-biosensors-for-in-vivo-spatiotemporal-mapping-of-root-secretion
#14
Francesco Pini, Alison K East, Corinne Appia-Ayme, Jakub Tomek, Ramakrishnan Karunakaran, Marcela Mendoza-Suarez, Anne Edwards, Jason Terpolilli, Joshua Roworth, J Allan Downie, Philip S Poole
Plants engineer the rhizosphere to their advantage by secreting various nutrients and secondary metabolites. Coupling transcriptomic and metabolomic analysis of the Pisum sativum rhizosphere, a suite of bioreporters has been developed in Rhizobium leguminosarum bv. viciae 3841, and these detect metabolites secreted by roots in space and time. Fourteen bacterial lux-fusion bioreporters, specific for sugars, polyols, amino acids, organic acids or flavonoids, have been validated in vitro and in vivo. Using different bacterial mutants (nodC, nifH), the process of colonization and symbiosis has been analyzed, revealing compounds important in the different steps of the rhizobial-legume association...
May 11, 2017: Plant Physiology
https://www.readbyqxmd.com/read/28493911/long-term-fertilization-determines-different-metabolomic-profiles-and-responses-in-saplings-of-three-rainforest-tree-species-with-different-adult-canopy-position
#15
Albert Gargallo-Garriga, S Joseph Wright, Jordi Sardans, Míriam Pérez-Trujillo, Michal Oravec, Kristýna Večeřová, Otmar Urban, Marcos Fernández-Martínez, Teodor Parella, Josep Peñuelas
BACKGROUND: Tropical rainforests are frequently limited by soil nutrient availability. However, the response of the metabolic phenotypic plasticity of trees to an increase of soil nutrient availabilities is poorly understood. We expected that increases in the ability of a nutrient that limits some plant processes should be detected by corresponding changes in plant metabolome profile related to such processes. METHODOLOGY/PRINCIPAL FINDINGS: We studied the foliar metabolome of saplings of three abundant tree species in a 15 year field NPK fertilization experiment in a Panamanian rainforest...
2017: PloS One
https://www.readbyqxmd.com/read/28493687/comparative-metabolic-response-between-cucumber-cucumis-sativus-and-corn-zea-mays-to-a-cu-oh-2-nanopesticide
#16
Lijuan Zhao, Yuxiong Huang, Arturo A Keller
Due to their unique properties, copper-based nanopesticides are emerging in the market. Thus, understanding their effect on crop plants is very important. Metabolomics can capture a snapshot of cellular metabolic responses to a stressor. We selected maize and cucumber as model plants for exposure to different doses of Cu(OH)2 nanopesticide. GC-TOF-MS-based metabolomics was employed to determine the metabolic responses of these two species. Results revealed significant differences in metabolite profile changes between maize and cucumber...
May 17, 2017: Journal of Agricultural and Food Chemistry
https://www.readbyqxmd.com/read/28487704/a-combined-comparative-transcriptomic-metabolomic-and-anatomical-analyses-of-two-key-domestication-traits-pod-dehiscence-and-seed-dormancy-in-pea-pisum-sp
#17
Iveta Hradilová, Oldřich Trněný, Markéta Válková, Monika Cechová, Anna Janská, Lenka Prokešová, Khan Aamir, Nicolas Krezdorn, Björn Rotter, Peter Winter, Rajeev K Varshney, Aleš Soukup, Petr Bednář, Pavel Hanáček, Petr Smýkal
The origin of the agriculture was one of the turning points in human history, and a central part of this was the evolution of new plant forms, domesticated crops. Seed dispersal and germination are two key traits which have been selected to facilitate cultivation and harvesting of crops. The objective of this study was to analyze anatomical structure of seed coat and pod, identify metabolic compounds associated with water-impermeable seed coat and differentially expressed genes involved in pea seed dormancy and pod dehiscence...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28485430/contact-chemosensation-of-phytochemicals-by-insect-herbivores
#18
REVIEW
Stefan Pentzold, Antje Burse, Wilhelm Boland
Contact chemosensation, or tasting, is a complex process governed by nonvolatile phytochemicals that tell host-seeking insects whether they should accept or reject a plant. During this process, insect gustatory receptors (GRs) contribute to deciphering a host plant's metabolic code. GRs recognise many different classes of nonvolatile compounds; some GRs are likely to be narrowly tuned and others, broadly tuned. Although primary and/or secondary plant metabolites influence the insect's feeding choice, their decoding by GRs is challenging, because metabolites in planta occur in complex mixtures that have additive or inhibitory effects; in diverse forms composed of structurally unrelated molecules; and at different concentrations depending on the plant species, its tissue and developmental stage...
May 10, 2017: Natural Product Reports
https://www.readbyqxmd.com/read/28484246/metabolic-discrimination-of-sea-buckthorn-from-different-hippopha%C3%A3-species-by-1-h-nmr-based-metabolomics
#19
Yue Liu, Gang Fan, Jing Zhang, Yi Zhang, Jingjian Li, Chao Xiong, Qi Zhang, Xiaodong Li, Xianrong Lai
Sea buckthorn (Hippophaë; Elaeagnaceae) berries are widely consumed in traditional folk medicines, nutraceuticals, and as a source of food. The growing demand of sea buckthorn berries and morphological similarity of Hippophaë species leads to confusions, which might cause misidentification of plants used in natural products. Detailed information and comparison of the complete set of metabolites of different Hippophaë species are critical for their objective identification and quality control. Herein, the variation among seven species and seven subspecies of Hippophaë was studied using proton nuclear magnetic resonance ((1)H NMR) metabolomics combined with multivariate data analysis, and the important metabolites were quantified by quantitative (1)H NMR (qNMR) method...
May 8, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28481937/metabolomic-homeostasis-shifts-after-callus-formation-and-shoot-regeneration-in-tomato
#20
Alka Kumari, Kamalika Ray, Sadhna Sadhna, Arun Kumar Pandey, Yellamaraju Sreelakshmi, Rameshwar Sharma
Plants can regenerate from a variety of tissues on culturing in appropriate media. However, the metabolic shifts involved in callus formation and shoot regeneration are largely unknown. The metabolic profiles of callus generated from tomato (Solanum lycopersicum) cotyledons and that of shoot regenerated from callus were compared with the pct1-2 mutant that exhibits enhanced polar auxin transport and the shr mutant that exhibits elevated nitric oxide levels. The transformation from cotyledon to callus involved a major shift in metabolite profiles with denser metabolic networks in the callus...
2017: PloS One
keyword
keyword
63924
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"