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Nuclear magnetic resonance

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https://www.readbyqxmd.com/read/28917945/toxic-responses-of-perna-viridis-hepatopancreas-exposed-to-ddt-benzo-a-pyrene-and-their-mixture-uncovered-by-itraq-based-proteomics-and-nmr-based-metabolomics
#1
Qinqin Song, Hailong Zhou, Qian Han, Xiaoping Diao
Dichlorodiphenyltrichloroethane (DDT) and benzo(a)pyrene (BaP) are environmental estrogens (EEs) that are ubiquitous in the marine environment. In the present study, we integrated isobaric tags for relative and absolute quantitation (iTRAQ)-based proteomic and nuclear magnetic resonance (NMR)-based metabolomic approaches to explore the toxic responses of green mussel hepatopancreas exposed to DDT (10μg/L), BaP (10μg/L) and their mixture. The metabolic responses indicated that BaP primarily disturbed energy metabolism and osmotic regulation in the hepatopancreas of the male green mussel P...
September 11, 2017: Aquatic Toxicology
https://www.readbyqxmd.com/read/28917930/structural-characterization-and-rheological-behavior-of-a-heteroxylan-extracted-from-plantago-notata-lagasca-plantaginaceae-seeds
#2
Fatima Benaoun, Cédric Delattre, Zakaria Boual, Alina V Ursu, Christophe Vial, Christine Gardarin, Anne Wadouachi, Didier Le Cerf, Tony Varacavoudin, Mohamed Didi Ould El-Hadj, Philippe Michaud, Guillaume Pierre
Plantago notata (Plantaginaceae) is a spontaneous plant from Septentrional Algerian Sahara currently used by traditional healers to treat stomach disorders, inflammations or wound healing. A water-soluble polysaccharide, called PSPN (PolySaccharide fraction from Plantago Notata), was extracted and purified from the seeds of this semi-arid plant. The structural features of this mucilage were evaluated by colorimetric assays, Fourier transformed infrared spectroscopy (FT-IR), gas chromatography coupled to mass spectrometry (GC/MS) and (1)H/(13)C Nuclear Magnetic Resonance (NMR) spectroscopy...
November 1, 2017: Carbohydrate Polymers
https://www.readbyqxmd.com/read/28917920/one-step-hydrothermal-synthesis-of-fluorescent-nanocrystalline-cellulose-carbon-dot-hydrogels
#3
Wei Li, Sichun Wang, Ying Li, Chunhui Ma, Zhanhua Huang, Chunsheng Wang, Jian Li, Zhijun Chen, Shouxin Liu
Fluorescent nanocrystalline cellulose/carbon dots (NCC/CDs) hydrogels were successfully prepared by a facile one-step green hydrothermal carbonization process. The properties of NCC/CDs hydrogels prepared at different temperatures were investigated by fluorescence spectroscopy, transmission electron microscopy, nuclear magnetic resonance spectroscopy, X-ray diffraction, and thermogravimetric analysis. NCC/CDs hydrogels with high crystallinity, high thermal stability, and excellent fluorescence properties can be obtained by controlling the hydrothermal treatment temperature...
November 1, 2017: Carbohydrate Polymers
https://www.readbyqxmd.com/read/28917800/%C3%AE-cyclodextrins-incorporated-multi-walled-carbon-nanotubes-modified-electrode-for-the-voltammetric-determination-of-the-pesticide-dichlorophen
#4
Karolina Sipa, Mariola Brycht, Andrzej Leniart, Paweł Urbaniak, Agnieszka Nosal-Wiercińska, Bartłomiej Pałecz, Sławomira Skrzypek
In this work, a glassy carbon electrode modified with β-cyclodextrins and multi-walled carbon nanotubes (β-CDs/MWCNTs/GCE) was constructed and applied for the square-wave adsorptive stripping voltammetric (SWAdSV) determination of the pesticide dichlorophen (Dcp). For the first time, this compound was electrochemically investigated. The voltammetric measurements were conducted in phosphate buffer (PBS) at pH 6.5 as a supporting electrolyte, and SWAdSV technique parameters were optimized. A linear calibration curve in the wide concentration range from 5...
January 1, 2018: Talanta
https://www.readbyqxmd.com/read/28915942/development-of-a-validated-lc-ms-ms-method-for-the-quantification-of-19-endogenous-asthma-copd-potential-urinary-biomarkers
#5
Mona M Khamis, Darryl J Adamko, Anas El-Aneed
Obstructive airways inflammatory diseases sometimes show overlapping symptoms that hinder their early and correct diagnosis. Current clinical tests are tedious and are of inadequate specificity in special population such as the elderly and children. Therefore, we are developing tandem mass spectrometric (MS/MS) methods for targeted analysis of urine biomarkers. Recently, proton-nuclear magnetic resonance ((1)H-NMR) analysis proposed 50 urinary metabolites as potential diagnostic biomarkers among asthma and chronic obstructive pulmonary disease (COPD) patients...
October 9, 2017: Analytica Chimica Acta
https://www.readbyqxmd.com/read/28915016/cell-free-protein-synthesis-enhancement-from-real-time-nmr-metabolite-kinetics-redirecting-energy-fluxes-in-hybrid-rrl-systems
#6
Baptiste Panthu, Théophile Ohlmann, Johan Perrier, Uwe Schlattner, Pierre Jalinot, Bénédicte Elena-Herrmann, Gilles J P Rautureau
A counter-intuitive cell-free protein synthesis (CFPS) strategy, based on reducing the ribosomal fraction in rabbit reticulocyte lysate (RRL), triggers the development of hybrid systems composed of RRL ribosome-free supernatant complemented with ribosomes from different mammalian cell-types. Hybrid RRL systems maintain translational properties of the original ribosome cell types, and deliver protein expression levels similar to RRL. Here, we show that persistent ribosome-associated metabolic activity consuming ATP is a major obstacle for maximal protein yield...
September 15, 2017: ACS Synthetic Biology
https://www.readbyqxmd.com/read/28914342/quantification-of-the-intracellular-life-time-of-water-molecules-to-measure-transport-rates-of-human-aquaglyceroporins
#7
Madelene Palmgren, Malin Hernebring, Stefanie Eriksson, Karin Elbing, Cecilia Geijer, Samo Lasič, Peter Dahl, Jesper S Hansen, Daniel Topgaard, Karin Lindkvist-Petersson
Orthodox aquaporins are transmembrane channel proteins that facilitate rapid diffusion of water, while aquaglyceroporins facilitate the diffusion of small uncharged molecules such as glycerol and arsenic trioxide. Aquaglyceroporins play important roles in human physiology, in particular for glycerol metabolism and arsenic detoxification. We have developed a unique system applying the strain of the yeast Pichia pastoris, where the endogenous aquaporins/aquaglyceroporins have been removed and human aquaglyceroporins AQP3, AQP7, and AQP9 are recombinantly expressed enabling comparative permeability measurements between the expressed proteins...
September 15, 2017: Journal of Membrane Biology
https://www.readbyqxmd.com/read/28914192/current-trends-in-cancer-biomarker-discovery-using-urinary-metabolomics-achievements-and-new-challenges
#8
Casey Burton, Yinfa Ma
The development of effective screening methods for early cancer detection is one of the foremost challenges facing modern cancer research. Urinary metabolomics has recently emerged as a potentially transformative approach to cancer biomarker discovery owing to its noninvasive sampling characteristics and robust analytical feasibility. OBJECTIVE: To provide an overview of new developments in urinary metabolomics, cover the most promising aspects of hyphenated techniques in untargeted and targeted metabolomics, and to discuss technical and clinical limitations in addition to the emerging challenges in the field of urinary metabolomics and its application to cancer biomarker discovery...
September 13, 2017: Current Medicinal Chemistry
https://www.readbyqxmd.com/read/28913531/augmented-ph-sensitivity-absorbance-of-a-ruthenium-ii-bis-bipyridine-complex-with-elongation-of-the-conjugated-ligands-an-experimental-and-theoretical-investigation
#9
Siew San Tan, Susumu Yanagisawa, Kouji Inagaki, Yoshitada Morikawa, Mohammad B Kassim
An absorbance-based sensor employing ruthenium bipyridyl with a phenanthroline-fused benzoylthiourea moiety formulated as [Ru(ii)(bpy)2(phen-nBT)](PF6)2 {bpy = 2,2'-bipyridine, phen = 1,10-phenanthroline, nBT = n-benzoylthiourea} has been synthesized and characterized by elemental analyses, mass spectrometry, and infrared, ultraviolet-visible, luminescence and nuclear magnetic resonance spectroscopy. The changes in the intensity of absorption and emission of the complex induced by functionalization of the benzoylthiourea ligands with amino and carbonyl in their protonated and deprotonated forms were studied experimentally...
September 15, 2017: Physical Chemistry Chemical Physics: PCCP
https://www.readbyqxmd.com/read/28912575/thermodynamics-of-nanodisc-formation-mediated-by-styrene-maleic-acid-2-1-copolymer
#10
Anne Grethen, Abraham Olusegun Oluwole, Bartholomäus Danielczak, Carolyn Vargas, Sandro Keller
Styrene/maleic acid copolymers (SMA) have recently attracted great interest for in vitro studies of membrane proteins, as they self-insert into and fragment biological membranes to form polymer-bounded nanodiscs that provide a native-like lipid-bilayer environment. SMA copolymers are available in different styrene/maleic acid ratios and chain lengths and, thus, possess different charge densities, hydrophobicities, and solubilisation properties. Here, we studied the equilibrium solubilisation properties of the most commonly used copolymer, SMA(2:1), by monitoring the formation of nanodiscs from phospholipid vesicles using (31)P nuclear magnetic resonance spectroscopy, dynamic light scattering, and differential scanning calorimetry...
September 14, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28912103/membrane-perturbing-activities-and-structural-properties-of-the-frog-skin-derived-peptide-esculentin-1a-1-21-nh2-and-its-diastereomer-esc-1-21-1c-correlation-with-their-antipseudomonal-and-cytotoxic-activity
#11
Maria Rosa Loffredo, Anirban Ghosh, Nicole Harmouche, Bruno Casciaro, Vincenzo Luca, Annalisa Bortolotti, Floriana Cappiello, Lorenzo Stella, Anirban Bhunia, Burkhard Bechinger, Maria Luisa Mangoni
Antimicrobial peptides (AMPs) represent new alternatives to cope with the increasing number of multi-drug resistant microbial infections. Recently, a derivative of the frog-skin AMP esculentin-1a, Esc(1-21), was found to rapidly kill both the planktonic and biofilm forms of the Gram-negative bacterium Pseudomonas aeruginosa with a membrane-perturbing activity as a plausible mode of action. Lately, its diastereomer Esc(1-21)-1c containing two d-amino acids i.e. (D)Leu14 and (D)Ser17 revealed to be less cytotoxic, more stable to proteolytic degradation and more efficient in eradicating Pseudomonas biofilm...
September 11, 2017: Biochimica et Biophysica Acta
https://www.readbyqxmd.com/read/28911967/applications-of-nuclear-magnetic-resonance-in-lipid-analyses-an-emerging-powerful-tool-for-lipidomics-studies
#12
REVIEW
Jingbo Li, Thomas Vosegaard, Zheng Guo
The role of lipids in cell, tissue, and organ physiology is crucial; as many diseases, including cancer, diabetes, neurodegenerative, and infectious diseases, are closely related to absorption and metabolism of lipids. Mass spectrometry (MS) based methods are the most developed powerful tools to study the synthetic pathways and metabolic networks of cellular lipids in biological systems; leading to the birth of an emerging subject lipidomics, which has been extensively reviewed. Nuclear magnetic resonance (NMR), another powerful analytical tool, which allows the visualization of single atoms and molecules, is receiving increasing attention in lipidomics analyses...
September 11, 2017: Progress in Lipid Research
https://www.readbyqxmd.com/read/28911777/isotope-ratio-monitoring-13-c-nuclear-magnetic-resonance-spectrometry-for-the-analysis-of-position-specific-isotope-ratios
#13
Richard J Robins, Gérald S Remaud, Serge Akoka
Studies of changes in isotope ratios in a given molecule caused by an enzyme reaction can give considerable insight into mechanism. Similarly, cascades of enzymes-pathways-can also introduce fractionation that can be used to characterize the type of metabolism being exploited. In both cases, classical studies have used enrichment techniques that have allowed the determination of isotope fractionation. More recent approaches, however, allow such studies to be carried out on substrates in which the isotope ratios are in the natural abundance range...
2017: Methods in Enzymology
https://www.readbyqxmd.com/read/28911686/development-of-validated-high-performance-thin-layer-chromatography-for-quantification-of-aristolochic-acid-in-different-species-of-the-aristolochiaceae-family
#14
Poonam Agrawal, Kirti Laddha
This study was undertaken to isolate and quantify aristolochic acid in Aristolochia indica stem and Apama siliquosa root. Aristolochic acid is an important biomarker component present in the Aristolochiaceae family. The isolation method involved simple solvent extraction, precipitation and further purification, using recrystallization. The structure of the compound was confirmed using infrared spectroscopy, mass spectrometry and nuclear magnetic resonance. A specific and rapid high-performance thin layer chromatography (HPTLC) method was developed for analysis of aristolochic acid...
April 2017: Journal of Food and Drug Analysis
https://www.readbyqxmd.com/read/28911676/composition-analysis-and-antioxidant-properties-of-black-garlic-extract
#15
Xiaoming Lu, Ningyang Li, Xuguang Qiao, Zhichang Qiu, Pengli Liu
Black garlic produced from fresh garlic under controlled high temperature and humidity has strong antioxidant properties. To determine these compounds, five fractions (from F1 to F5) were separated and purified by elution with chloroform:methanol at different ratios (8:1, 6:1, 4:1, 2:1, and 0:1; v/v). The antioxidant activity of each fraction was analyzed. The results showed that F3 and F4 had higher phenolic contents and stronger 2,2-diphenyl-2-picrylhydrazyl radical scavenging activity than the others. Seven purified individual components were further separated using semipreparation high-performance liquid chromatography from these two intensely antioxidant fractions (F3 and F4), their structures were elucidated by high-performance liquid chromatography coupled to diode array detection, electrospray ionization, mass spectrometry, (1)H nuclear magnetic resonance, and (13)C nuclear magnetic resonance spectrometry...
April 2017: Journal of Food and Drug Analysis
https://www.readbyqxmd.com/read/28911619/characterization-of-yogurts-made-with-milk-solids-nonfat-by-rheological-behavior-and-nuclear-magnetic-resonance-spectroscopy
#16
Hai-Yan Yu, Li Wang, Kathryn L McCarthy
The effect of adding milk solids nonfat (MSNF) on the physical properties and microstructure of yogurts was investigated. The physical properties of fat free yogurt, fat free with MSNF yogurt, whole fat yogurt, and whole fat with MSNF yogurt were analyzed using shear viscosity, viscoelasticity, and texture analysis. The two yogurts with MSNF had higher consistency coefficient (K), storage modulus (G'), yield stress, and hardness. To gain insight into the multiphase system, nuclear magnetic resonance (NMR) and brightfield microscope images were acquired...
October 2016: Journal of Food and Drug Analysis
https://www.readbyqxmd.com/read/28910997/paediatric-nuclear-medicine-imaging
#17
Lorenzo Biassoni, Marina Easty
Background: Nuclear medicine imaging explores tissue viability and function by using radiotracers that are taken up at cellular level with different mechanism. This imaging technique can also be used to assess blood flow and transit through tubular organs. Nuclear medicine imaging has been used in paediatrics for decades and this field is continuously evolving. Sources of data: The data presented comes from clinical experience and some milestone papers on the subject...
September 1, 2017: British Medical Bulletin
https://www.readbyqxmd.com/read/28906074/fully-automated-quantum-chemistry-based-computation-of-spin-spin-coupled-nuclear-magnetic-resonance-spectra-for-molecules
#18
Stefan Grimme, Christoph Bannwarth, Sebastian Dohm, Andreas Hansen, Jana Pisarek, Philipp Pracht, Jakob Seibert, Frank Neese
We present a composite procedure for the quantum chemical computation of spin-spin coupled 1H-NMR spectra for general, flexible molecules in solution. It is based on four main steps, namely, conformer/rotamer ensemble (CRE) generation by the fast tight-binding method GFN-xTB and a newly developed search algorithm, relative free energy and NMR parameter computation, and solution of the spin-Hamiltonian. In this way the NMR-specific nuclear permutation problem is solved and the correct spin-symmetries are obtained...
September 14, 2017: Angewandte Chemie
https://www.readbyqxmd.com/read/28906013/novel-insights-into-the-inhibitory-effect-and-mechanism-of-proanthocyanidins-from-pyracantha-fortuneana-fruit-on-%C3%AE-glucosidase
#19
Mankun Wei, Wei-Ming Chai, Qin Yang, Rui Wang, Yiyuan Peng
Proanthocyanidins were extracted from Pyracantha fortuneana fruit (PFF), and their structures were investigated through (13) C nuclear magnetic resonance ((13) C NMR), high performance liquid chromatography (HPLC) and high resolution mass spectrometry (HRMS). The results showed that these compounds were predominantly constituted of procyanidin with A-type and B-type linkage and coexistence of procyanidins glucoside. Spectroscopy methods were used to analyze the inhibitory activity of proanthocyanidins on α-glucosidase...
September 14, 2017: Journal of Food Science
https://www.readbyqxmd.com/read/28905842/malignant-perivascular-epithelioid-cell-tumor-of-the-orbit-report-of-a-case-and-review-of-literature
#20
Md Shahid Alam, Bipasha Mukherjee, S Krishnakumar, Jyotirmay Biswas
Perivascular epithelioid cell tumor (PEComa) is a rare neoplasm considered to arise from myomelanocytic cell lineage. The uterus is reportedly the most common site to be involved. Orbital PEComa is extremely rare with only two cases reported till date. A 5-year-old male presented with a right medial orbital mass for the last 6 months. The patient was diagnosed with alveolar soft part sarcoma elsewhere. Magnetic resonance imaging features were suggestive of lymphangioma with bleeding. The excision biopsy revealed multiple tumor cells comprising epithelioid cells with clear cytoplasm, along with nuclear atypia and mitosis...
September 2017: Indian Journal of Ophthalmology
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