keyword
https://read.qxmd.com/read/38647152/eravacycline-an-antibacterial-drug-repurposed-for-pancreatic-cancer-therapy-insights-from-a-molecular-based-deep-learning-model
#1
JOURNAL ARTICLE
Adi Jabarin, Guy Shtar, Valeria Feinshtein, Eyal Mazuz, Bracha Shapira, Shimon Ben-Shabat, Lior Rokach
BACKGROUND: Pancreatic ductal adenocarcinoma (PDAC) remains a serious threat to health, with limited effective therapeutic options, especially due to advanced stage at diagnosis and its inherent resistance to chemotherapy, making it one of the leading causes of cancer-related deaths worldwide. The lack of clear treatment directions underscores the urgent need for innovative approaches to address and manage this deadly condition. In this research, we repurpose drugs with potential anti-cancer activity using machine learning (ML)...
March 27, 2024: Briefings in Bioinformatics
https://read.qxmd.com/read/38646516/generative-retrieval-augmented-ontologic-graph-and-multiagent-strategies-for-interpretive-large-language-model-based-materials-design
#2
JOURNAL ARTICLE
Markus J Buehler
Transformer neural networks show promising capabilities, in particular for uses in materials analysis, design, and manufacturing, including their capacity to work effectively with human language, symbols, code, and numerical data. Here, we explore the use of large language models (LLMs) as a tool that can support engineering analysis of materials, applied to retrieving key information about subject areas, developing research hypotheses, discovery of mechanistic relationships across disparate areas of knowledge, and writing and executing simulation codes for active knowledge generation based on physical ground truths...
April 17, 2024: ACS Eng Au
https://read.qxmd.com/read/38645139/integrated-number-sense-tutoring-remediates-aberrant-neural-representations-in-children-with-mathematical-disabilities
#3
Yunji Park, Yuan Zhang, Flora Schwartz, Teresa Iuculano, Hyesang Chang, Vinod Menon
UNLABELLED: Number sense is essential for early mathematical development but it is compromised in children with mathematical disabilities (MD). Here we investigate the impact of a personalized 4-week Integrated Number Sense (INS) tutoring program aimed at improving the connection between nonsymbolic (sets of objects) and symbolic (Arabic numerals) representations in children with MD. Utilizing neural pattern analysis, we found that INS tutoring not only improved cross-format mapping but also significantly boosted arithmetic fluency in children with MD...
April 12, 2024: bioRxiv
https://read.qxmd.com/read/38645074/overcoming-the-preferred-orientation-problem-in-cryoem-with-self-supervised-deep-learning
#4
Yun-Tao Liu, Hongcheng Fan, Jason J Hu, Z Hong Zhou
While advances in single-particle cryoEM have enabled the structural determination of macromolecular complexes at atomic resolution, particle orientation bias (the so-called "preferred" orientation problem) remains a complication for most specimens. Existing solutions have relied on biochemical and physical strategies applied to the specimen and are often complex and challenging. Here, we develop spIsoNet, an end-to-end self-supervised deep-learning-based software to address the preferred orientation problem...
April 14, 2024: bioRxiv
https://read.qxmd.com/read/38644905/advancing-autonomy-through-lifelong-learning-a-survey-of-autonomous-intelligent-systems
#5
REVIEW
Dekang Zhu, Qianyi Bu, Zhongpan Zhu, Yujie Zhang, Zhipeng Wang
The combination of lifelong learning algorithms with autonomous intelligent systems (AIS) is gaining popularity due to its ability to enhance AIS performance, but the existing summaries in related fields are insufficient. Therefore, it is necessary to systematically analyze the research on lifelong learning algorithms with autonomous intelligent systems, aiming to gain a better understanding of the current progress in this field. This paper presents a thorough review and analysis of the relevant work on the integration of lifelong learning algorithms and autonomous intelligent systems...
2024: Frontiers in Neurorobotics
https://read.qxmd.com/read/38644882/intelligent-recommendation-system-for-college-english-courses-based-on-graph-convolutional-networks
#6
JOURNAL ARTICLE
Chen Lilan, Jianqi Zhong
With the rapid development of international communication, the number of English courses has shown an explosive growth trend, which has caused a serious problem of information overload, resulting in poor teaching performance of recommended English courses. To solve this problem, this paper proposes a graph convolutional neural network model based on College English course texts, students' major, English foundation and network structure characteristics. First, by analyzing the relevant data of College English courses and combining with graph neural network, an English course recommendation algorithm model based on the College English learning strategy of proximity comparison is proposed...
April 30, 2024: Heliyon
https://read.qxmd.com/read/38644676/graphene-and-metal-organic-framework-hybrids-for-high-performance-sensors-for-lung-cancer-biomarker-detection-supported-by-machine-learning-augmentation
#7
JOURNAL ARTICLE
Anh Tuan Trong Tran, Kamrul Hassan, Tran Thanh Tung, Ashis Tripathy, Ashok Mondal, Dusan Losic
Conventional diagnostic methods for lung cancer, based on breath analysis using gas chromatography and mass spectrometry, have limitations for fast screening due to their limited availability, operational complexity, and high cost. As potential replacement, among several low-cost and portable methods, chemoresistive sensors for the detection of volatile organic compounds (VOCs) that represent biomarkers of lung cancer were explored as promising solutions, which unfortunately still face challenges. To address the key problems of these sensors, such as low sensitivity, high response time, and poor selectivity, this study presents the design of new chemoresistive sensors based on hybridised porous zeolitic imidazolate (ZIF-8) based metal-organic frameworks (MOFs) and laser-scribed graphene (LSG) structures, inspired by the architecture of the human lung...
April 22, 2024: Nanoscale
https://read.qxmd.com/read/38644426/impact-of-long-term-mining-activity-on-groundwater-dynamics-in-a-mining-district-in-xinjiang-coal-mine-base-northwest-china-insight-from-geochemical-fingerprint-and-machine-learning
#8
JOURNAL ARTICLE
Ankun Luo, Shuning Dong, Hao Wang, Zhongkui Ji, Tiantian Wang, Xiaoyu Hu, Chenyu Wang, Shen Qu, Shouchuan Zhang
Long-term coal mining could lead to a serious of geo-environmental problems. However, less comprehensive identification of factors controlling the groundwater dynamics were involved in previous studies. This study focused on 68 groundwater samples collected before and after mining activities, Self-Organizing Maps (SOM) combining with Principal Component Analysis (PCA) derived that the groundwater samples were classified into five clusters. Clusters 1-5 (C1-C5) represented the groundwater quality affected by different hydrochemical processes, mainly including mineral (carbonate and evaporite) dissolution and cation exchange, which were controlled by the hydrochemical environment at different stages of mining activities...
April 22, 2024: Environmental Science and Pollution Research International
https://read.qxmd.com/read/38644402/investigation-of-the-effectiveness-of-a-classification-method-based-on-improved-dae-feature-extraction-for-hepatitis-c-prediction
#9
JOURNAL ARTICLE
Lin Zhang, Jixin Wang, Rui Chang, Weigang Wang
Hepatitis C, a particularly dangerous form of viral hepatitis caused by hepatitis C virus (HCV) infection, is a major socio-economic and public health problem. Due to the rapid development of deep learning, it has become a common practice to apply deep learning to the healthcare industry to improve the effectiveness and accuracy of disease identification. In order to improve the effectiveness and accuracy of hepatitis C detection, this study proposes an improved denoising autoencoder (IDAE) and applies it to hepatitis C disease detection...
April 21, 2024: Scientific Reports
https://read.qxmd.com/read/38644075/deep-learning-based-model-predictive-controller-on-a-magnetic-levitation-ball-system
#10
JOURNAL ARTICLE
Tianbo Peng, Hui Peng, Rongwei Li
The magnetic levitation (maglev) ball system is a prototypical Single-Input-Single-Output (SISO) system, characterized by its pronounced nonlinearity, rapid response, and open-loop instability. It serves as the basis for many industrial devices. For describing the dynamics of the maglev ball system precisely in the pseudo linear model, the long short-term memory (LSTM) based auto-regressive model with exogenous input variables (LSTM-ARX) is proposed. Firstly, the LSTM network is modified by incorporating the auto-regressive structure with respect to sequence input, allowing it to deduce a locally linearized model without the need for Taylor expansion...
April 18, 2024: ISA Transactions
https://read.qxmd.com/read/38643875/application-of-machine-learning-to-analyze-ozone-sensitivity-to-influencing-factors-a-case-study-in-nanjing-china
#11
JOURNAL ARTICLE
Chenwu Zhang, Yumin Xie, Min Shao, Qin''geng Wang
Ground-level ozone (O3 ) has been an emerging concern in China. Due to its complicated formation mechanisms, understanding the effects of influencing factors is critical for making effective efforts on the pollution control. This study aims to present and demonstrate the practicality of a data-driven technique that applies a machine learning (ML) model coupled with the SHapley Additive exPlanations (SHAP) approach in O3 simulation and sensitivity analysis. Based on hourly measured concentrations of O3 and its major precursors, as well as meteorological factors in a northern area of Nanjing, China, a Light Gradient Boosting Machine (LightGBM) model was established to simulate O3 concentrations in different seasons, and the SHAP approach was applied to conduct in-depth analysis on the impacts of influencing factors on O3 formation...
April 19, 2024: Science of the Total Environment
https://read.qxmd.com/read/38643597/drspring-graph-convolutional-network-gcn-based-drug-synergy-prediction-utilizing-drug-induced-gene-expression-profile
#12
JOURNAL ARTICLE
Jiyeon Han, Min Ji Kang, Sanghyuk Lee
Great efforts have been made over the years to identify novel drug pairs with synergistic effects. Although numerous computational approaches have been proposed to analyze diverse types of biological big data, the pharmacogenomic profiles, presumably the most direct proxy of drug effects, have been rarely used due to the data sparsity problem. In this study, we developed a composite deep-learning-based model that predicts the drug synergy effect utilizing pharmacogenomic profiles as well as molecular properties...
April 8, 2024: Computers in Biology and Medicine
https://read.qxmd.com/read/38642415/a-memristive-all-inclusive-hypernetwork-for-parallel-analog-deployment-of-full-search-space-architectures
#13
JOURNAL ARTICLE
Bo Lyu, Yin Yang, Yuting Cao, Tuo Shi, Yiran Chen, Tingwen Huang, Shiping Wen
In recent years, there has been a significant advancement in memristor-based neural networks, positioning them as a pivotal processing-in-memory deployment architecture for a wide array of deep learning applications. Within this realm of progress, the emerging parallel analog memristive platforms are prominent for their ability to generate multiple feature maps in a single processing cycle. However, a notable limitation is that they are specifically tailored for neural networks with fixed structures. As an orthogonal direction, recent research reveals that neural architecture should be specialized for tasks and deployment platforms...
April 15, 2024: Neural Networks: the Official Journal of the International Neural Network Society
https://read.qxmd.com/read/38642335/a-design-thinking-led-approach-to-develop-a-responsive-feeding-intervention-for-australian-families-vulnerable-to-food-insecurity-eat-learn-grow
#14
JOURNAL ARTICLE
Kimberley A Baxter, Jeremy Kerr, Smita Nambiar, Danielle Gallegos, Robyn A Penny, Rachel Laws, Rebecca Byrne
BACKGROUND: Design thinking is an iterative process that innovates solutions through a person-centric approach and is increasingly used across health contexts. The person-centric approach lends itself to working with groups with complex needs. One such group is families experiencing economic hardship, who are vulnerable to food insecurity and face challenges with child feeding. OBJECTIVE: This study describes the application of a design thinking framework, utilizing mixed methods, including co-design, to develop a responsive child-feeding intervention for Australian families-'Eat, Learn, Grow'...
April 2024: Health Expectations: An International Journal of Public Participation in Health Care and Health Policy
https://read.qxmd.com/read/38642073/early-identification-of-patients-at-risk-for-iron-deficiency-anemia-using-deep-learning-techniques
#15
JOURNAL ARTICLE
Nelly Estefanie Garduno-Rapp, Yee Seng Ng, Jenny L Weon, Sameh N Saleh, Christoph U Lehmann, Chenlu Tian, Andrew Quinn
OBJECTIVES: Iron-deficiency anemia (IDA) is a common health problem worldwide, and up to 10% of adult patients with incidental IDA may have gastrointestinal cancer. A diagnosis of IDA can be established through a combination of laboratory tests, but it is often underrecognized until a patient becomes symptomatic. Based on advances in machine learning, we hypothesized that we could reduce the time to diagnosis by developing an IDA prediction model. Our goal was to develop 3 neural networks by using retrospective longitudinal outpatient laboratory data to predict the risk of IDA 3 to 6 months before traditional diagnosis...
April 20, 2024: American Journal of Clinical Pathology
https://read.qxmd.com/read/38642065/quasi-classical-trajectory-calculation-of-rate-constants-using-an-ab-initio-trained-machine-learning-model-aml-md-with-multifidelity-data
#16
JOURNAL ARTICLE
Zhiyu Shi, Aditya Dilip Lele, Ahren W Jasper, Stephen J Klippenstein, Yiguang Ju
Machine learning (ML) provides a great opportunity for the construction of models with improved accuracy in classical molecular dynamics (MD). However, the accuracy of a ML trained model is limited by the quality and quantity of the training data. Generating large sets of accurate ab initio training data can require significant computational resources. Furthermore, inconsistent or incompatible data with different accuracies obtained using different methods may lead to biased or unreliable ML models that do not accurately represent the underlying physics...
April 20, 2024: Journal of Physical Chemistry. A
https://read.qxmd.com/read/38641689/a-novel-method-based-reinforcement-learning-with-deep-temporal-difference-network-for-flexible-double-shop-scheduling-problem
#17
JOURNAL ARTICLE
Xiao Wang, Peisi Zhong, Mei Liu, Chao Zhang, Shihao Yang
This paper studies the flexible double shop scheduling problem (FDSSP) that considers simultaneously job shop and assembly shop. It brings about the problem of scheduling association of the related tasks. To this end, a reinforcement learning algorithm with a deep temporal difference network is proposed to minimize the makespan. Firstly, the FDSSP is defined as the mathematical model of the flexible job-shop scheduling problem joined to the assembly constraint level. It is translated into a Markov decision process that directly selects behavioral strategies according to historical machining state data...
April 20, 2024: Scientific Reports
https://read.qxmd.com/read/38641600/impact-of-virtual-problem-based-learning-of-cardiopulmonary-resuscitation-on-fourth-year-nursing-students-satisfaction-and-performance-a-quasi-experimental-study
#18
JOURNAL ARTICLE
Seyedeh Nayereh Falahan, Edris Habibi, Naser Kamyari, Vahid Yousofvand
BACKGROUND: Regarding competency of nursing students in cardiopulmonary resuscitation (CPR), nursing students frequently exhibit inadequate performance and low satisfaction levels regarding CPR training methods. The problem-based learning (PBL) method, characterized by a constructivist approach, has been underutilized for CPR training, particularly in a virtual format. Hence, this study aims to assess the influence of virtual problem-based learning in cardiopulmonary resuscitation on the satisfaction and performance of fourth-year nursing students...
April 19, 2024: BMC Medical Education
https://read.qxmd.com/read/38641188/a-multi-featured-expression-recognition-model-incorporating-attention-mechanism-and-object-detection-structure-for-psychological-problem-diagnosis
#19
JOURNAL ARTICLE
Xiufeng Zhang, Bingyi Li, Guobin Qi
Expression is the main method for judging the emotional state and psychological condition of the human body, and the prediction of changes in facial expressions can effectively determine the mental health of a person, thus avoiding serious psychological or psychiatric disorders due to early negligence. From a computer vision perspective, most researchers have focused on studying facial expression analysis, and in some cases, body posture is also considered. However their performance is more limited under unconstrained natural conditions, which requires more information to be used in human emotion analysis...
April 17, 2024: Physiology & Behavior
https://read.qxmd.com/read/38641084/language-model-based-on-deep-learning-network-for-biomedical-named-entity-recognition
#20
JOURNAL ARTICLE
Guan Hou, Yuhao Jian, Qingqing Zhao, Xiongwen Quan, Han Zhang
Biomedical Named Entity Recognition (BioNER) is one of the most basic tasks in biomedical text mining, which aims to automatically identify and classify biomedical entities in text. Recently, deep learning-based methods have been applied to Biomedical Named Entity Recognition and have shown encouraging results. However, many biological entities are polysemous and ambiguous, which is one of the main obstacles to the task of biomedical named entity recognition. Deep learning methods require large amounts of training data, so the lack of data also affect the performance of model recognition...
April 17, 2024: Methods: a Companion to Methods in Enzymology
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