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https://www.readbyqxmd.com/read/28719406/toward-a-biopsychosocial-ecology-of-the-human-microbiome-brain-gut-axis-and-health
#1
Karl J Maier, Mustafa al'Absi
OBJECTIVE: Rapidly expanding insights to the human microbiome and health suggest that Western medicine is poised for significant evolution, or perhaps revolution - this while the field continues on a trajectory from reductionism to a biopsychosocial (BPS) paradigm recognizing biological, psychological, and social influences on health. The apparent sensitivity of the microbiota to perturbations across BPS domains suggests that a broad and inclusive framework is needed to develop applicable knowledge in this area...
July 18, 2017: Psychosomatic Medicine
https://www.readbyqxmd.com/read/28718274/-microbiome-and-next-generation-sequencing
#2
REVIEW
A Suárez Moya
The human microbiome is an internal ecosystem that refers to the community of microorganisms that populate the human body. These microorganisms are essential to support his health, because the interaction between the host immune system and microorganisms, provide the host with protection against pathogens, and contributes to the preservation of health. Bacteriological culture has been the basis for traditional microbiology; however, most of the bacterial forms observed in nature cannot be isolated with laboratory culture methods...
July 17, 2017: Revista Española de Quimioterapia: Publicación Oficial de la Sociedad Española de Quimioterapia
https://www.readbyqxmd.com/read/28717220/imaging-mass-spectrometry-and-ms-ms-molecular-networking-reveals-chemical-interactions-among-cuticular-bacteria-and-pathogenic-fungi-associated-with-fungus-growing-ants
#3
Cristopher A Boya P, Hermógenes Fernández-Marín, Luis C Mejía, Carmenza Spadafora, Pieter C Dorrestein, Marcelino Gutiérrez
The fungus-growing ant-microbe symbiosis is an ideal system to study chemistry-based microbial interactions due to the wealth of microbial interactions described, and the lack of information on the molecules involved therein. In this study, we employed a combination of MALDI imaging mass spectrometry (MALDI-IMS) and MS/MS molecular networking to study chemistry-based microbial interactions in this system. MALDI IMS was used to visualize the distribution of antimicrobials at the inhibition zone between bacteria associated to the ant Acromyrmex echinatior and the fungal pathogen Escovopsis sp...
July 17, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28714207/synthetic-multispecies-microbial-communities-reveals-shifts-in-secondary-metabolism-and-facilitates-cryptic-natural-product-discovery
#4
Yutong Shi, Chengqian Pan, Kuiwu Wang, Xuegang Chen, Xiaodan Wu, Chen-Tung Arthur Chen, Bin Wu
Chemically mediated interactions have been hypothesized to be essential for ecosystem functioning as co-occurring organisms can influence the performance of each other by metabolic means. Here we present a co-culture device that allows co-culturing of microorganisms that are physically separated but can exchange chemical signals and metabolites. This setup was adopted to perform investigations on the secondary metabolisms of both a fungal-bacterial community and an actinomycetic-actinomycetic community. This study employed a metabolomics approach integrating LC-MS profiling, multivariate data analysis and molecular networking techniques...
July 17, 2017: Environmental Microbiology
https://www.readbyqxmd.com/read/28714057/population-specific-responses-to-interspecific-competition-in-the-gut-microbiota-of-two-atlantic-salmon-salmo-salar-populations
#5
Xiaoping He, Subba Rao Chaganti, Daniel D Heath
The gut microbial community in vertebrates plays a role in nutrient digestion and absorption, development of intestine and immune systems, resistance to infection, regulation of bone mass and even host behavior and can thus impact host fitness. Atlantic salmon (Salmo salar) reintroduction efforts into Lake Ontario, Canada, have been unsuccessful, likely due to competition with non-native salmonids. In this study, we explored interspecific competition effects on the gut microbiota of two Atlantic salmon populations (LaHave and Sebago) resulting from four non-native salmonids...
July 16, 2017: Microbial Ecology
https://www.readbyqxmd.com/read/28713623/bistability-and-oscillations-in-co-repressive-synthetic-microbial-consortia
#6
Mehdi Sadeghpour, Alan Veliz-Cuba, Gábor Orosz, Krešimir Josić, Matthew R Bennett
Synthetic microbial consortia are conglomerations of multiple strains of genetically engineered microbes programmed to cooperatively bring about population-level phenotypes. By coordinating their activity, the constituent strains can display emergent behaviors that are difficult to engineer into isogenic populations. To do so, strains are engineered to communicate with one another through intercellular signaling pathways. As a result, the regulatory networks that control gene transcription throughout the population are sensitive to the extracellular concentration of the signaling molecules, and hence the relative densities of constituent strains...
March 2017: Quantitative Biology
https://www.readbyqxmd.com/read/28713340/distinct-network-interactions-in-particle-associated-and-free-living-bacterial-communities-during-a-microcystis-aeruginosa-bloom-in-a-plateau-lake
#7
Caiyun Yang, Qi Wang, Paulina N Simon, Jinyu Liu, Lincong Liu, Xianzhu Dai, Xiaohui Zhang, Jialiang Kuang, Yasuo Igarashi, Xuejun Pan, Feng Luo
Particle-associated bacteria (PAB) and free-living bacteria (FLB) from aquatic environments during phytoplankton blooms differ in their physical distance from algae. Both the interactions within PAB and FLB community fractions and their relationship with the surrounding environmental properties are largely unknown. Here, by using high-throughput sequencing and network-based analyses, we compared the community and network characteristics of PAB and FLB from a plateau lake during a Microcystis aeruginosa bloom...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28712728/hexim1-and-neat1-long-non-coding-rna-form-a-multi-subunit-complex-that-regulates-dna-mediated-innate-immune-response
#8
Mehdi Morchikh, Alexandra Cribier, Raoul Raffel, Sonia Amraoui, Julien Cau, Dany Severac, Emeric Dubois, Olivier Schwartz, Yamina Bennasser, Monsef Benkirane
The DNA-mediated innate immune response underpins anti-microbial defenses and certain autoimmune diseases. Here we used immunoprecipitation, mass spectrometry, and RNA sequencing to identify a ribonuclear complex built around HEXIM1 and the long non-coding RNA NEAT1 that we dubbed the HEXIM1-DNA-PK-paraspeckle components-ribonucleoprotein complex (HDP-RNP). The HDP-RNP contains DNA-PK subunits (DNAPKc, Ku70, and Ku80) and paraspeckle proteins (SFPQ, NONO, PSPC1, RBM14, and MATRIN3). We show that binding of HEXIM1 to NEAT1 is required for its assembly...
July 10, 2017: Molecular Cell
https://www.readbyqxmd.com/read/28712705/engineering-of-global-regulators-and-cell-surface-properties-toward-enhancing-stress-tolerance-in-saccharomyces-cerevisiae
#9
REVIEW
Kouichi Kuroda, Mitsuyoshi Ueda
Microbial cell factories are subject to various stresses, leading to the reductions of metabolic activity and bioproduction efficiency. Therefore, the development of stress-tolerant microorganisms is important for improving bio-production efficiency. Recently, modifications of cell surface properties and master regulators have been shown to be effective approaches for enhancing stress tolerance. The cell surface is an attractive target owing to its interactions with the environment and its role in transmitting environmental information...
July 13, 2017: Journal of Bioscience and Bioengineering
https://www.readbyqxmd.com/read/28712670/production-and-regulation-of-interleukin-1-family-cytokines-at-the-materno-fetal-interface
#10
Louis M Scott, Aled H Bryant, April Rees, Billy Down, Ruth H Jones, Catherine A Thornton
IL-1 family members regulate innate immune responses, are produced by gestation-associated tissues, and have a role in healthy and adverse pregnancy outcomes. To better understand their role at the materno-fetal interface we used a human tissue explant model to map lipopolysaccharide (LPS)-stimulated production of IL-1α, IL-1β, IL-18, IL-33, IL-1Ra, IL-18BPa, ST2 and IL-1RAcP by placenta, choriodecidua and amnion. Caspase-dependent processing of IL-1α, IL-1β, IL-18, and IL-33 and the ability of IL-1α, IL-1β, IL-18, and IL-33 to regulate the production of IL-1RA, IL-18BPa, ST2 and IL-1RAcP was also determined...
July 13, 2017: Cytokine
https://www.readbyqxmd.com/read/28712045/dynamics-of-soil-bacterial-communities-over-a-vegetation-season-relate-to-both-soil-nutrient-status-and-plant-growth-phenology
#11
Davide Francioli, Elke Schulz, François Buscot, Thomas Reitz
Soil microorganisms regulate element cycling and plant nutrition, mediate co-existence of neighbors, and stabilize plant communities. Many of these effects are dependent upon environmental conditions and, in particular, on nutrient quality and availability in soils. In this context, we set up a pot experiment in order to examine the combined effects of soil nutrient availability and microbial communities on plant-soil interactions and to investigate assemblage rules for soil bacterial communities under changed nutrient conditions...
July 15, 2017: Microbial Ecology
https://www.readbyqxmd.com/read/28711842/nitrogen-deposition-has-minor-effect-on-soil-extracellular-enzyme-activities-in-six-chinese-forests
#12
Xin Jing, Xiao Chen, Mao Tang, Zongju Ding, Lai Jiang, Peng Li, Suhui Ma, Di Tian, Longchao Xu, Jianxiao Zhu, Chengjun Ji, Haihua Shen, Chengyang Zheng, Jingyun Fang, Biao Zhu
Soil extracellular enzymes play a key role in mediating a range of forest ecosystem functions (i.e., carbon and nutrients cycling and biological productivity), particularly in the face of atmospheric N deposition that has been increasing at an unprecedented rate globally. However, most studies have focused only on surface soils in a single ecosystem. In this study, we aimed to determine whether the effect of simulated N deposition on the activities and ratios of soil enzymes changes with soil depth across six forest ecosystems in eastern China...
July 13, 2017: Science of the Total Environment
https://www.readbyqxmd.com/read/28711820/integrated-metagenomics-and-molecular-ecological-network-analysis-of-bacterial-community-composition-during-the-phytoremediation-of-cadmium-contaminated-soils-by-bioenergy-crops
#13
Zhaojin Chen, Yuan Zheng, Chuanyu Ding, Xuemin Ren, Jian Yuan, Feng Sun, Yuying Li
Two energy crops (maize and soybean) were used in the remediation of cadmium-contaminated soils. These crops were used because they are fast growing, have a large biomass and are good sources for bioenergy production. The total accumulation of cadmium in maize and soybean plants was 393.01 and 263.24μg pot(-1), respectively. The rhizosphere bacterial community composition was studied by MiSeq sequencing. Phylogenetic analysis was performed using 16S rRNA gene sequences. The rhizosphere bacteria were divided into 33 major phylogenetic groups according to phyla...
July 13, 2017: Ecotoxicology and Environmental Safety
https://www.readbyqxmd.com/read/28710513/mink-mustela-vison-gut-microbial-communities-from-northeast-china-and-its-internal-relationship-with-gender-and-food-additives
#14
Haiping Zhao, Weili Sun, Zhuo Wang, Ting Zhang, Yanyan Fan, Haijun Gu, Guangyu Li
It is well documented that the microbial interactions and biodiversity play an important role in health and disease in mammalian species. There is a rare study about gut microbiota of Mustelidae family. In this study, 40 male and female minks from Northeast China were divided into three groups and fed until they reached maturity. The V3 region of 16S rRNA genes was amplified and sequenced using NGS. There were 526 OTUs principally concentrated among five bacterial phyla. Two points about mink's body weight gaining were observed: (1) the weight of male individuals increased more rapidly than female individuals; (2) the weight of individuals whose feed was supplemented with Chinese herb additives increased more rapidly than individuals without giving food additives...
July 14, 2017: Current Microbiology
https://www.readbyqxmd.com/read/28710440/ecological-interactions-in-cloudina-from-the-ediacaran-of-brazil-implications-for-the-rise-of-animal-biomineralization
#15
Bruno Becker-Kerber, Mírian Liza Alves Forancelli Pacheco, Isaac Daniel Rudnitzki, Douglas Galante, Fabio Rodrigues, Juliana de Moraes Leme
At the Ediacaran/Cambrian boundary, ecosystems witnessed an unparalleled biological innovation: the appearance of shelled animals. Here, we report new paleoecological and paleobiological data on Cloudina, which was one of the most abundant shelled animals at the end of the Ediacaran. We report the close association of Cloudina tubes with microbial mat textures as well as organic-rich material, syndepositional calcite and goethite cement between their flanges, thus reinforcing the awareness of metazoan/microorganism interactions at the end of the Ediacaran...
July 14, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28710400/molecular-inter-kingdom-interactions-of-endophytes-isolated-from-lychnophora-ericoides
#16
Andrés M Caraballo-Rodríguez, Pieter C Dorrestein, Monica T Pupo
The importance of microbial natural products has been widely demonstrated in the search for new antibiotics. However, the functional role of microbial metabolites in nature remains to be deciphered. Several natural products are known to mediate microbial interactions through metabolic exchange. One approach to investigate metabolic exchange in the laboratory is through microbial interactions. Here, we describe the chemical study of selected endophytes isolated from the Brazilian medicinal plant Lychnophora ericoides by pairwise inter-kingdom interactions in order to correlate the impact of co-cultivation to their metabolic profiles...
July 14, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28708872/nasopharyngeal-microbiota-in-infants-and-changes-during-viral-upper-respiratory-tract-infection-and-acute-otitis-media
#17
Tasnee Chonmaitree, Kristofer Jennings, Georgiy Golovko, Kamil Khanipov, Maria Pimenova, Janak A Patel, David P McCormick, Michael J Loeffelholz, Yuriy Fofanov
BACKGROUND: Interferences between pathogenic bacteria and specific commensals are known. We determined the interactions between nasopharyngeal microbial pathogens and commensals during viral upper respiratory tract infection (URI) and acute otitis media (AOM) in infants. METHODS: We analyzed 971 specimens collected monthly and during URI and AOM episodes from 139 infants. The 16S rRNA V4 gene regions were sequenced on the Illumina MiSeq platform. RESULTS: Among the high abundant genus-level nasopharyngeal microbiota were Moraxella, Haemophilus, and Streptococcus (3 otopathogen genera), Corynebacterium, Dolosigranulum, Staphylococcus, Acinetobacter, Pseudomonas, and Bifidobacterium...
2017: PloS One
https://www.readbyqxmd.com/read/28708620/the-characteristics-of-dissolved-organic-matter-dom-in-storm-sewer-sediments-and-the-binding-interaction-with-cu-ii-in-four-typical-regions-in-beijing-china
#18
Ziyang Zhang, Kun Li, Xiaoran Zhang, Haiyan Li
In this work, dissolved organic matter (DOM) was extracted from storm sewer sediments collected in four typical regions (residential, campus, traffic and business regions) in Beijing, China. The basic characteristics of DOM were analyzed by UV-visible spectroscopy (UV-Vis), excitation-emission matrix Fluorescence Spectroscopy and Fourier Transform Infrared Spectroscopy. Furthermore, the complexation between DOM and Cu(II) were investigated. The results showed that there were large amount of aromatic structure in the DOM extracted from storm sewer sediments...
July 2017: Water Science and Technology: a Journal of the International Association on Water Pollution Research
https://www.readbyqxmd.com/read/28708371/exploring-new-mechanisms-for-effective-antimicrobial-materials-electric-contact-killing-based-on-multiple-schottky-barriers
#19
Eva De Lucas-Gil, Julián Jiménez Reinosa, Kerstin Neuhaus, Liliana Vera, Marisol S Martin-Gonzalez, Jose F Fernandez, Fernando Rubio-Marcos
The increasing threat of multidrug-resistance organisms is a cause for worldwide concern. Progressively microorganisms become resistant to commonly used antibiotics, which are a healthcare challenge. Thus, the discovery of new antimicrobial agents or new mechanisms different from those used is necessary. Here, we report an effective and selective antimicrobial activity of microstructured ZnO (Ms-ZnO) agent through the design of a novel star-shaped morphology, resulting in modulation of surface charge orientation...
July 14, 2017: ACS Applied Materials & Interfaces
https://www.readbyqxmd.com/read/28705224/more-than-just-a-gut-feeling-constraint-based-genome-scale-metabolic-models-for-predicting-functions-of-human-intestinal-microbes
#20
REVIEW
Kees C H van der Ark, Ruben G A van Heck, Vitor A P Martins Dos Santos, Clara Belzer, Willem M de Vos
The human gut is colonized with a myriad of microbes, with substantial interpersonal variation. This complex ecosystem is an integral part of the gastrointestinal tract and plays a major role in the maintenance of homeostasis. Its dysfunction has been correlated to a wide array of diseases, but the understanding of causal mechanisms is hampered by the limited amount of cultured microbes, poor understanding of phenotypes, and the limited knowledge about interspecies interactions. Genome-scale metabolic models (GEMs) have been used in many different fields, ranging from metabolic engineering to the prediction of interspecies interactions...
July 14, 2017: Microbiome
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