keyword
https://read.qxmd.com/read/38720086/computationally-restoring-the-potency-of-a-clinical-antibody-against-omicron
#1
JOURNAL ARTICLE
Thomas A Desautels, Kathryn T Arrildt, Adam T Zemla, Edmond Y Lau, Fangqiang Zhu, Dante Ricci, Stephanie Cronin, Seth J Zost, Elad Binshtein, Suzanne M Scheaffer, Bernadeta Dadonaite, Brenden K Petersen, Taylor B Engdahl, Elaine Chen, Laura S Handal, Lynn Hall, John W Goforth, Denis Vashchenko, Sam Nguyen, Dina R Weilhammer, Jacky Kai-Yin Lo, Bonnee Rubinfeld, Edwin A Saada, Tracy Weisenberger, Tek-Hyung Lee, Bradley Whitener, James B Case, Alexander Ladd, Mary S Silva, Rebecca M Haluska, Emilia A Grzesiak, Christopher G Earnhart, Svetlana Hopkins, Thomas W Bates, Larissa B Thackray, Brent W Segelke, Antonietta Maria Lillo, Shivshankar Sundaram, Jesse D Bloom, Michael S Diamond, James E Crowe, Robert H Carnahan, Daniel M Faissol
The COVID-19 pandemic underscored the promise of monoclonal antibody-based prophylactic and therapeutic drugs1-3 and revealed how quickly viral escape can curtail effective options4,5 . When the SARS-CoV-2 Omicron variant emerged in 2021, many antibody drug products lost potency, including Evusheld and its constituent, cilgavimab4-6 . Cilgavimab, like its progenitor COV2-2130, is a class 3 antibody that is compatible with other antibodies in combination4 and is challenging to replace with existing approaches...
May 8, 2024: Nature
https://read.qxmd.com/read/38695131/integration-of-indigenous-research-methodologies-traditional-ecological-knowledge-and-molecular-scatology-in-an-assessment-of-mesocarnivore-presence-diet-and-habitat-use-on-yurok-ancestral-lands
#2
JOURNAL ARTICLE
Seafha C Ramos, Melanie Culver
Partnerships between Tribes and researchers in wildlife monitoring and application of Traditional Ecological Knowledge (TEK) have taken a variety of forms, and some scholars have noted a need for culturally sensitive approaches. Guided by Indigenous Research Methodologies, this research is coupled with Yurok TEK, or hlkelonah 'ue-megetohl ('to take care of the earth'), enabling an applied, culturally sensitive approach in partnership with the Yurok Tribe. We present results from a molecular scatology study of wildlife within the ancestral territory of the Yurok Tribe...
May 2, 2024: Molecular Ecology Resources
https://read.qxmd.com/read/38694874/identification-of-immune-related-biomarkers-for-glaucoma-using-gene-expression-profiling
#3
JOURNAL ARTICLE
Dangdang Wang, Yanyu Pu, Sisi Tan, Xiaochen Wang, Lihong Zeng, Junqin Lei, Xi Gao, Hong Li
Introduction: Glaucoma, a principal cause of irreversible vision loss, is characterized by intricate optic neuropathy involving significant immune mechanisms. This study seeks to elucidate the molecular and immune complexities of glaucoma, aiming to improve our understanding of its pathogenesis. Methods: Gene expression profiles from glaucoma patients were analyzed to identify immune-related differentially expressed genes (DEGs). Techniques used were weighted gene co-expression network analysis (WGCNA) for network building, machine learning algorithms for biomarker identification, establishment of subclusters related to immune reactions, and single-sample gene set enrichment analysis (ssGSEA) to explore hub genes' relationships with immune cell infiltration and immune pathway activation...
2024: Frontiers in Genetics
https://read.qxmd.com/read/38694303/intestinal-obstruction-induced-by-portal-vein-thrombosis-in-a-female-undergoing-oral-contraceptive-therapy-a-case-report-with-comprehensive-review
#4
Munna William, Tek Nath Yogi, Amrit Bhusal, Mudasira Habib, Amjad Ali Raza, Waqar Ahmad, Ajay Kumar Yadav, Objan Kumar Rawal, Pramod Pathik
INTRODUCTION: Portal vein thrombosis (PVT) is a rare medical condition that obstructs blood flow in the portal vein, with cirrhosis as a common predisposing factor. However, its association with oral contraceptive pills (OCPs), particularly with progestins, remains inadequately explored. This case report aims to contribute to this understanding, focusing on the rare presentation of PVT-induced intestinal obstruction in a female on prolonged OCP therapy. CASE PRESENTATION: A 45-year-old female presented with severe abdominal pain, vomiting, and constipation...
May 2024: Annals of Medicine and Surgery
https://read.qxmd.com/read/38689815/anencephaly-in-a-triplet-pregnancy-unprecedented-spontaneous-reabsorption-in-utero-and-subsequent-normal-delivery-via-c-section-a-rare-case-report
#5
Amrit Bhusal, Tek Nath Yogi, Jwala Budthapa, Shailendra Katwal, Asim Mahat
Multiple pregnancies are infrequently encountered, with the incidence of spontaneous triplet pregnancies estimated at approximately 1 in 7000 pregnancies. Triplet gestations are recognized for their propensity to bring about a spectrum of pregnancy related complexities, encompassing fetal structural abnormalities, neurological anomalies, disturbances in amniotic fluid levels, preterm labor, and suboptimal neonatal outcomes. Anencephaly is a serious congenital defect where the brain and skull do not fully develop, often leading to a poor prognosis...
July 2024: Radiology Case Reports
https://read.qxmd.com/read/38679596/first-report-of-powdery-mildew-caused-by-podosphaera-xanthii-on-youngia-japonica-subsp-elstonii-in-hainan-province-china
#6
JOURNAL ARTICLE
Hua Wu, Yingwen Pan
Youngia japonica (L.) DC. is a polymorphic annual herb of the Asteraceae family. Although this plant originated in Asia, it is now world-widely distributed. In China, Y. japonica is used for edible or folk medicine to treat viral infections and various kinds of inflammation (Yu et al. 2021). As a traditional Chinese medicinal herb, Y. japonica used for the treatment of inflammatory diseases, such as angina, leucorrhea, mastitis, conjunctivitis, and rheumatoid arthritis (Chen et al. 2006). During the spring of 2023, powdery mildew symptoms were observed on 60% of Y...
April 28, 2024: Plant Disease
https://read.qxmd.com/read/38676850/discovery-and-genome-wide-characterization-of-a-novel-miniature-inverted-repeat-transposable-element-reveal-genome-specific-distribution-in-glycine
#7
JOURNAL ARTICLE
Hümeyra Yıldız Akkamış, Emir Can Kaya, Ahmet L Tek
BACKGROUND: Miniature inverted repeat transposable elements (MITEs) are a dynamic component responsible for genome evolution. Tourist MITEs are derived from and mobilized by elements from the harbinger superfamily. OBJECTIVE: In this study, a novel family of Tourist-like MITE was characterized in wild soybean species Glycine falcata. The new GftoMITE1 was initially discovered as an insertional polymorphism of the centromere-specific histone H3 (CenH3) gene in G...
April 27, 2024: Genes & Genomics
https://read.qxmd.com/read/38671671/exploring-the-genetic-landscape-of-childhood-glaucoma
#8
REVIEW
Yang Pan, Takeshi Iwata
Childhood glaucoma, a significant cause of global blindness, represents a heterogeneous group of disorders categorized into primary or secondary forms. Primary childhood glaucoma stands as the most prevalent subtype, comprising primary congenital glaucoma (PCG) and juvenile open-angle glaucoma (JOAG). Presently, multiple genes are implicated in inherited forms of primary childhood glaucoma. This comprehensive review delves into genetic investigations into primary childhood glaucoma, with a focus on identifying causative genes, understanding their inheritance patterns, exploring essential biological pathways in disease pathogenesis, and utilizing animal models to study these mechanisms...
April 9, 2024: Children
https://read.qxmd.com/read/38662478/kinntrex-a-neural-network-to-unveil-protein-mechanisms-from-time-resolved-x-ray-crystallography
#9
JOURNAL ARTICLE
Gabriel Biener, Tek Narsingh Malla, Peter Schwander, Marius Schmidt
Here, a machine-learning method based on a kinetically informed neural network (NN) is introduced. The proposed method is designed to analyze a time series of difference electron-density maps from a time-resolved X-ray crystallographic experiment. The method is named KINNTREX (kinetics-informed NN for time-resolved X-ray crystallography). To validate KINNTREX, multiple realistic scenarios were simulated with increasing levels of complexity. For the simulations, time-resolved X-ray data were generated that mimic data collected from the photocycle of the photoactive yellow protein...
May 1, 2024: IUCrJ
https://read.qxmd.com/read/38652215/ang-1-and-vegf-central-regulators-of-angiogenesis
#10
REVIEW
Yuanqin Zhao, Bo Yu, Yanxia Wang, Shiming Tan, Qian Xu, Zhaoyue Wang, Kun Zhou, Huiting Liu, Zhong Ren, Zhisheng Jiang
Angiopoietin-1 (Ang-1) and Vascular Endothelial Growth Factor (VEGF) are central regulators of angiogenesis and are often inactivated in various cardiovascular diseases. VEGF forms complexes with ETS transcription factor family and exerts its action by downregulating multiple genes. Among the target genes of the VEGF-ETS complex, there are a significant number encoding key angiogenic regulators. Phosphorylation of the VEGF-ETS complex releases transcriptional repression on these angiogenic regulators, thereby promoting their expression...
April 23, 2024: Molecular and Cellular Biochemistry
https://read.qxmd.com/read/38649375/evaluating-the-potential-and-eligibility-of-conservation-agriculture-practices-for-carbon-credits
#11
JOURNAL ARTICLE
Adeeth A G Cariappa, Noufa C Konath, Tek B Sapkota, Vijesh V Krishna
Carbon credits, a voluntary market mechanism to reduce greenhouse gas (GHG) emissions, can incentivize climate action. We evaluate the potential and eligibility of Conservation Agriculture (CA) practices for carbon credit generation in India under Verra's VM0042 methodology. Using farmer surveys and remote sensing data, we assess the eligibility based on the following conditions: Additionality Condition (GHG emission reductions to exceed legal requirements and the weighted mean adoption rate to be < 20% of area in the baseline), Yield Penalty Condition (no > 5% decrease in crop yields), and Quantitative Adjustment Condition (reduction in chemical fertilizer use by > 5%)...
April 22, 2024: Scientific Reports
https://read.qxmd.com/read/38640425/first-report-of-powdery-mildew-caused-by-podosphaera-xanthii-on-sphagneticola-trilobata-in-hainan-province-china
#12
JOURNAL ARTICLE
Hua Wu, Yingwen Pan
Sphagneticola trilobata (L.) Pruski is a perennial creeping herb of the Asteraceae family, which is native to South America. It was introduced into Southern China as a groundcover in the 1970s (Zhang et al. 2023). Now it is mainly used for folk medicine to treat various kinds of inflammatory, incuding joint pain, rheumatic diseases, arthritis, in addition to treating persistent wounds, ulcers, and edemas (Gonçalves et al. 2022). In February and November 2023, powdery mildew symptoms were observed on 60% of S...
April 19, 2024: Plant Disease
https://read.qxmd.com/read/38638367/unravelling-the-impact-of-climate-change-on-honey-bees-an-ensemble-modelling-approach-to-predict-shifts-in-habitat-suitability-in-queensland-australia
#13
JOURNAL ARTICLE
Sarasie Tennakoon, Armando Apan, Tek Maraseni
Honey bees play a vital role in providing essential ecosystem services and contributing to global agriculture. However, the potential effect of climate change on honey bee distribution is still not well understood. This study aims to identify the most influential bioclimatic and environmental variables, assess their impact on honey bee distribution, and predict future distribution. An ensemble modelling approach using the biomod2 package in R was employed to develop three models: a climate-only model, an environment-only model, and a combined climate and environment model...
April 2024: Ecology and Evolution
https://read.qxmd.com/read/38637280/genetic-variants-associated-with-the-risk-of-stroke-in-sickle-cell-anemia-systematic-review-and-meta-analysis
#14
JOURNAL ARTICLE
Aradhana Kumari, Ganesh Chauhan, Partha Kumar Chaudhuri, Sushma Kumari, Anupa Prasad
Sickle cell anemia (SCA) is the most common cause of stroke in children. As it is a rare disease, studies investigating the association with complications like stroke in SCD have small sample sizes. Here, we performed a systematic review and meta-analysis of the studies exploring an association of genetic variants with stroke to get a better indication of their association with stroke. PubMed and Google Scholar were searched to identify studies that had performed an association analysis of genetic variants for the risk of stroke in SCA patients...
April 18, 2024: Hemoglobin
https://read.qxmd.com/read/38634851/is-it-possible-to-predict-mortality-in-patients-with-high-grade-blunt-liver-injury-a-single-trauma-center-study
#15
JOURNAL ARTICLE
Muhammed Kadir Yıldırak, Hanife Seyda Ulgur, Mert Gedik, Enes Sertkaya, Emre Furkan Kırkan, Fikret Ezberci, Hüseyin Kerem Tolan, Adnan Özpek
BACKGROUND: Blunt abdominal trauma constitutes a significant portion of trauma cases and is often associated with liver injury. Given that high-grade liver injuries remain life-threatening, identifying patients who will likely require more vigilant attention and care is crucial. This study aims to determine the parameters that increase mortality in patients with high-grade liver trauma. METHODS: This study enrolled 38 patients with Grade III or higher liver injuries, treated by the general surgery department between 2008 and 2023...
April 2024: Turkish Journal of Trauma & Emergency Surgery: TJTES
https://read.qxmd.com/read/38634711/nose-of-dog-eye-of-elk-and-wolf-s-liver-exploring-the-interconnectedness-of-indigenous-health-and-foraging-among-the-dukha-reindeer-herders-of-mongolia
#16
JOURNAL ARTICLE
Jean Hatcherson
Recent studies show that Traditional Ecological Knowledge (TEK) of Indigenous Peoples' food systems and the transfer of that knowledge to their children are critical to physical and mental health, promote the transfer of language and culture, and further resilience. The aim of this exploratory, medical ecological study was to document TEK about foraging and plant use among the Dukha, a small, semi-nomadic reindeer herding community in Northern Mongolia. Field research was conducted at multiple remote camps in 2019 and 2023...
December 2024: International Journal of Circumpolar Health
https://read.qxmd.com/read/38621342/proteomic-profiling-of-tumor-microenvironment-and-prognosis-risk-prediction-in-stage-i-lung-adenocarcinoma
#17
JOURNAL ARTICLE
Yueh-Feng Lu, Ya-Hsuan Chang, Yi-Ju Chen, Min-Shu Hsieh, Mong-Wei Lin, Hsao-Hsun Hsu, Chia-Li Han, Yu-Ju Chen, Sung-Liang Yu, Jin-Shing Chen, Hsuan-Yu Chen
OBJECTIVES: With the increasing popularity of CT screening, more cases of early-stage lung cancer are being diagnosed. However, 24.5% of stage I non-small-cell lung cancer (NSCLC) patients still experience treatment failure post-surgery. Biomarkers to predict lung cancer patients at high risk of recurrence are needed. MATERIALS AND METHODS: We collected protein mass spectrometry data from the Taiwan Lung Cancer Moonshot Project and performed bioinformatics analysis on proteins with differential expressions between tumor and adjacent normal tissues in 74 stage I lung adenocarcinoma (LUAD) cases, aiming to explore the tumor microenvironment related prognostic biomarkers...
April 12, 2024: Lung Cancer: Journal of the International Association for the Study of Lung Cancer
https://read.qxmd.com/read/38616598/adverse-events-following-covishield-and-vero-cell-vaccination-campaigns-against-covid-19
#18
JOURNAL ARTICLE
Santosh Adhikari, Jessica Maharjan, Sushan Bhattarai, Kshitij Kunwar, Sumit Agrawal, Raj Kumar Dangal, Ram Hari Chapagain, Tek Bahadur Bista, Srijana Bhattarai
BACKGROUND: Vaccination against COVID-19 for Nepalese was initiated in January 2021 for various age groups. People were anxious about receiving the vaccines and were concerned about the safety profile of the vaccine they received. In this study, we have tried to observe the Adverse Events Following Immunization of two different vaccines namely COVISHIELD (ChAdOx1 nCOV-19) and VERO CELL (CZ02 strain), used in different phases of vaccination by the government of Nepal. METHODS: We conducted a cross-sectional study among people who received COVID-19 vaccines in this study using a self-administered questionnaire...
March 31, 2024: Journal of Nepal Health Research Council
https://read.qxmd.com/read/38595338/identification-of-key-immune-infiltration-related-genes-involved-in-aortic-dissection-using-bioinformatic-analyses-and-experimental-verification
#19
JOURNAL ARTICLE
Lin Zheng, Yusi Yang, Jie Liu, Tianliang Zhao, Xin Zhang, Lihua Chen
PURPOSE: Immune microenvironment plays an important role in aortic dissection (AD). Therefore, novel immune biomarkers may facilitate AD prevention, diagnosis, and treatment. This study aimed at mining key immune-related genes and relevant mechanisms involved in AD pathogenesis. PATIENTS AND METHODS: Key immune cells in AD were identified by ssGESA algorithm. Next, genes associated with key immune cells were screened by weighted gene coexpression network analysis (WGCNA)...
2024: Journal of Inflammation Research
https://read.qxmd.com/read/38595061/first-report-of-powdery-mildew-caused-by-podosphaera-xanthii-on-acalypha-indica-in-china
#20
JOURNAL ARTICLE
Hua Wu, Yingwen Pan
Acalypha indica L. is an annual erect herb of the Euphorbiaceae family. This plant is found widely in the tropics and parts of Africa and Asia (Chakraborty et al. 2023). In China, A. indica is a vegetable and also used as a folk medicine due to its antipyretic and hemostatic, antibacterial and anti-inflammatory properties. In February 2022 and 2023, powdery mildew symptoms were observed on 70% of A. indica plants on the Hainan Medical University campus (19° 58' 53″ N; 110° 19' 47″ E) in Haikou, Hainan Province, China...
April 9, 2024: Plant Disease
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