keyword
https://read.qxmd.com/read/34910570/biogeochemical-niches-of-fe-cycling-communities-influencing-heavy-metal-transport-along-the-rio-tinto-spain
#21
JOURNAL ARTICLE
Sergey M Abramov, Daniel Straub, Julian Tejada, Lars Grimm, Franziska Schädler, Aleksandr Bulaev, Harald Thorwarth, Ricardo Amils, Andreas Kappler, Sara Kleindienst
In the mining-impacted Rio Tinto, Spain, Fe-cycling microorganisms influence the transport of heavy metals (HMs) into the Atlantic Ocean. However, it remains largely unknown how spatial and temporal hydrogeochemical gradients along the Rio Tinto shape the composition of Fe-cycling microbial communities and how this in turn affects HM mobility. Using a combination of DNA- and RNA-based 16S rRNA (gene) amplicon sequencing and hydrogeochemical analyses, we explored the impact of pH, Fe(III), Fe(II) and Cl- on Fe-cycling microorganisms...
December 15, 2021: Applied and Environmental Microbiology
https://read.qxmd.com/read/34852582/evolution-equation-for-nonlinear-lucassen-waves-with-application-to-a-threshold-phenomenon
#22
JOURNAL ARTICLE
Blake E Simon, John M Cormack, Mark F Hamilton
A nonlinear, fractional, surface wave equation with a spatial derivative of second order was developed by Kappler, Shrivastava, Schneider, and Netz [Phys. Rev. Fluids 2, 114804 (2017)] for propagation along an elastic interface coupled to a viscous incompressible liquid. Linear theory for the attenuation and dispersion was developed originally by Lucassen [Trans. Faraday Soc. 64, 2221 (1968)]. Kappler et al. introduced a fractional time derivative to account for the Lucassen wave attenuation and dispersion, and they included quadratic and cubic nonlinearity associated with compression of the elastic interface...
November 2021: Journal of the Acoustical Society of America
https://read.qxmd.com/read/34716089/the-effect-of-tin-prefiltration-on-extremity-cone-beam-ct-imaging-with-a-twin-robotic-x-ray-system
#23
JOURNAL ARTICLE
K S Luetkens, H Huflage, A S Kunz, L Ritschl, M Herbst, S Kappler, S Ergün, L Goertz, L Pennig, T A Bley, T Gassenmaier, J-P Grunz
INTRODUCTION: While tin prefiltration is established in various CT applications, its value in extremity cone-beam CT relative to optimized spectra has not been thoroughly assessed thus far. This study aims to investigate the effect of tin filters in extremity cone-beam CT with a twin-robotic X-ray system. METHODS: Wrist, elbow and ankle joints of two cadaveric specimens were examined in a laboratory setup with different combinations of prefiltration (copper, tin), tube voltage and current-time product...
May 2022: Radiography
https://read.qxmd.com/read/34714549/the-sonographic-appearance-of-endometrial-intraepithelial-neoplasia
#24
JOURNAL ARTICLE
Deborah Levine, Sonia C Gupta, Charlene Kwan, Alexander Brook, Elisa M Jorgensen, Amanda Kappler, Jonathan L Hecht
OBJECTIVES: To describe the sonographic findings of endometrial intraepithelial neoplasia (EIN), a precursor of endometrial cancer. METHODS: Cases were found by word search of pathology database 1/2013 to 6/2019. One hundred and seventy-eight patients with ultrasound <1 year prior to biopsy were included. Medical records were searched for patient data. Two radiologists blindly classified images. Differences of opinion were decided by clinical report. Univariate and multivariate analyses were performed...
July 2022: Journal of Ultrasound in Medicine: Official Journal of the American Institute of Ultrasound in Medicine
https://read.qxmd.com/read/34416230/structural-features-of-cryptococcus-neoformans-bifunctional-gar-air-synthetase-may-present-novel-antifungal-drug-targets
#25
JOURNAL ARTICLE
Sheena M H Chua, Maha S I Wizrah, Zhenyao Luo, Bryan Y J Lim, Ulrike Kappler, Bostjan Kobe, James A Fraser
Cryptococcus neoformans is a fungus that causes life-threatening systemic mycoses. During infection of the human host, this pathogen experiences a major change in the availability of purines; the fungus can scavenge the abundant purines in its environmental niche of pigeon excrement, but must employ de novo biosynthesis in the purine-poor human CNS. Eleven sequential enzymatic steps are required to form the first purine base, IMP, an intermediate in the formation of ATP and GTP. Over the course of evolution, several gene fusion events led to the formation of multifunctional purine biosynthetic enzymes in most organisms, particularly the higher eukaryotes...
October 2021: Journal of Biological Chemistry
https://read.qxmd.com/read/34385568/prognostic-role-of-docetaxel-induced-suppression-of-free-testosterone-serum-levels-in-metastatic-prostate-cancer-patients
#26
JOURNAL ARTICLE
Paula Kappler, Michael A Morgan, Philipp Ivanyi, Stefan J Brunotte, Arnold Ganser, Christoph W M Reuter
To date, only few data concerning the biologically active, free form of testosterone (FT) are available in metastatic prostate cancer (mPC) and the impact of FT on disease, therapy and outcome is largely unknown. We retrospectively studied the effect of docetaxel on FT and total testosterone (TT) serum levels in 67 mPC patients monitored between April 2008 and November 2020. FT and TT levels were measured before and weekly during therapy. The primary endpoint was overall survival (OS). Secondary endpoints were prostate-specific antigen response and radiographic response (PSAR, RR), progression-free survival (PFS), FT/TT levels and safety...
August 12, 2021: Scientific Reports
https://read.qxmd.com/read/34367088/the-dmsabc-sulfoxide-reductase-supports-virulence-in-non-typeable-haemophilus-influenzae
#27
JOURNAL ARTICLE
Rabeb Dhouib, Marufa Nasreen, Dk Seti Maimonah Pg Othman, Daniel Ellis, Simon Lee, Ama-Tawiah Essilfie, Philip M Hansbro, Alastair G McEwan, Ulrike Kappler
Although molybdenum-containing enzymes are well-established as having a key role in bacterial respiration, it is increasingly recognized that some may also support bacterial virulence. Here, we show that DmsABC, a putative dimethylsulfoxide (DMSO) reductase, is required for fitness of the respiratory pathogen Haemophilus influenzae (Hi) in different models of infection. Expression of the dmsABC operon increased with decreasing oxygen availability, but despite this, a Hi2019Δ d msA strain did not show any defects in anaerobic growth on chemically defined medium (CDM), and viability was also unaffected...
2021: Frontiers in Microbiology
https://read.qxmd.com/read/34288663/organic-matter-from-redoximorphic-soils-accelerates-and-sustains-microbial-fe-iii-reduction
#28
JOURNAL ARTICLE
Andreas Fritzsche, Julian Bosch, Michael Sander, Christian Schröder, James M Byrne, Thomas Ritschel, Prachi Joshi, Markus Maisch, Rainer U Meckenstock, Andreas Kappler, Kai U Totsche
Microbial reduction of Fe(III) minerals is a prominent process in redoximorphic soils and is strongly affected by organic matter (OM). We herein determined the rate and extent of microbial reduction of ferrihydrite (Fh) with either adsorbed or coprecipitated OM by Geobacter sulfurreducens . We focused on OM-mediated effects on electron uptake and alterations in Fh crystallinity. The OM was obtained from anoxic soil columns (effluent OM, efOM) and included-unlike water-extractable OM-compounds released by microbial activity under anoxic conditions...
August 3, 2021: Environmental Science & Technology
https://read.qxmd.com/read/34247483/anaerobic-neutrophilic-pyrite-oxidation-by-a-chemolithoautotrophic-nitrate-reducing-iron-ii-oxidizing-culture-enriched-from-a-fractured-aquifer
#29
JOURNAL ARTICLE
Natalia Jakus, Adrian Mellage, Carmen Höschen, Markus Maisch, James M Byrne, Carsten W Mueller, Peter Grathwohl, Andreas Kappler
Neutrophilic microbial pyrite (FeS2 ) oxidation coupled to denitrification is thought to be an important natural nitrate attenuation pathway in nitrate-contaminated aquifers. However, the poor solubility of pyrite raises questions about its bioavailability and the mechanisms underlying its oxidation. Here, we investigated direct microbial pyrite oxidation by a neutrophilic chemolithoautotrophic nitrate-reducing Fe(II)-oxidizing culture enriched from a pyrite-rich aquifer. We used pyrite with natural abundance (NA) of Fe isotopes (NA Fe-pyrite) and 57 Fe-labeled siderite to evaluate whether the oxidation of the more soluble Fe(II)-carbonate (FeCO3 ) can indirectly drive abiotic pyrite oxidation...
July 10, 2021: Environmental Science & Technology
https://read.qxmd.com/read/34227882/impact-of-artificial-intelligence-decision-support-using-deep-learning-on-breast-cancer-screening-interpretation-with-single-view-wide-angle-digital-breast-tomosynthesis
#30
JOURNAL ARTICLE
Marta C Pinto, Alejandro Rodriguez-Ruiz, Kristin Pedersen, Solveig Hofvind, Julia Wicklein, Steffen Kappler, Ritse M Mann, Ioannis Sechopoulos
Background The high volume of data in digital breast tomosynthesis (DBT) and the lack of agreement on how to best implement it in screening programs makes its use challenging. Purpose To compare radiologist performance when reading single-view wide-angle DBT images with and without an artificial intelligence (AI) system for decision and navigation support. Materials and Methods A retrospective observer study was performed with bilateral mediolateral oblique examinations and corresponding synthetic two-dimensional images acquired between June 2016 and February 2018 with a wide-angle DBT system...
September 2021: Radiology
https://read.qxmd.com/read/34143612/fe-ii-redox-chemistry-in-the-environment
#31
JOURNAL ARTICLE
Jianzhi Huang, Adele Jones, T David Waite, Yiling Chen, Xiaopeng Huang, Kevin M Rosso, Andreas Kappler, Muammar Mansor, Paul G Tratnyek, Huichun Zhang
Iron (Fe) is the fourth most abundant element in the earth's crust and plays important roles in both biological and chemical processes. The redox reactivity of various Fe(II) forms has gained increasing attention over recent decades in the areas of (bio) geochemistry, environmental chemistry and engineering, and material sciences. The goal of this paper is to review these recent advances and the current state of knowledge of Fe(II) redox chemistry in the environment. Specifically, this comprehensive review focuses on the redox reactivity of four types of Fe(II) species including aqueous Fe(II), Fe(II) complexed with ligands, minerals bearing structural Fe(II), and sorbed Fe(II) on mineral oxide surfaces...
July 14, 2021: Chemical Reviews
https://read.qxmd.com/read/34088175/chromium-vi-removal-kinetics-by-magnetite-coated-sand-small-scale-flow-through-column-experiments
#32
JOURNAL ARTICLE
Julian Sorwat, Adrian Mellage, Markus Maisch, Andreas Kappler, Olaf A Cirpka, James M Byrne
Magnetite nanoparticles are promising materials for treating toxic Cr(VI), but safe handling is challenging due to their small size. We prepared flow-through columns containing 10% or 100% (v/v) magnetite-coated sand. Cr(VI) removal efficiency was determined for different Cr(VI) concentrations (0.1 or 1.0 mM), neutral or alkaline pH, and oxic/anoxic conditions. We formulated a reactive-transport model that accurately predicted total Cr removal, accounting for reversible and irreversible (chemi)sorption reactions...
August 5, 2021: Journal of Hazardous Materials
https://read.qxmd.com/read/34085863/nitrate-removal-by-a-novel-lithoautotrophic-nitrate-reducing-iron-ii-oxidizing-culture-enriched-from-a-pyrite-rich-limestone-aquifer
#33
JOURNAL ARTICLE
Natalia Jakus, Nia Blackwell, Karsten Osenbrück, Daniel Straub, James M Byrne, Zhe Wang, David Glöckler, Martin Elsner, Tillmann Lueders, Peter Grathwohl, Sara Kleindienst, Andreas Kappler
Nitrate removal in oligotrophic environments is often limited by the availability of suitable organic electron donors. Chemolithoautotrophic bacteria may play a key role in denitrification in aquifers depleted in organic carbon. Under anoxic and circumneutral pH conditions, iron(II) was hypothesized to serve as an electron donor for microbially mediated nitrate reduction by Fe(II)-oxidizing (NRFeOx) microorganisms. However, lithoautotrophic NRFeOx cultures have never been enriched from any aquifer and as such there are no model cultures available to study the physiology and geochemistry of this potentially environmentally relevant process...
June 4, 2021: Applied and Environmental Microbiology
https://read.qxmd.com/read/34030262/fermentation-methanotrophy-and-methanogenesis-influence-sedimentary-fe-and-as-dynamics-in-as-affected-aquifers-in-vietnam
#34
JOURNAL ARTICLE
Martyna Glodowska, Magnus Schneider, Elisabeth Eiche, Agnes Kontny, Thomas Neumann, Daniel Straub, Michael Berg, Henning Prommer, Benjamin C Bostick, Athena A Nghiem, Sara Kleindienst, Andreas Kappler
High arsenic (As) concentrations in groundwater are a worldwide problem threatening the health of millions of people. Microbial processes are central in the (trans)formation of the As-bearing ferric and ferrous minerals, and thus regulate dissolved As levels in many aquifers. Mineralogy, microbiology and dissolved As levels can vary sharply within aquifers, making high-resolution measurements particularly valuable in understanding the linkages between them. We conducted a high spatial resolution geomicrobiological study in combination with analysis of sediment chemistry and mineralogy in an alluvial aquifer system affected by geogenic As in the Red River delta in Vietnam...
July 20, 2021: Science of the Total Environment
https://read.qxmd.com/read/33813189/microbial-transformation-of-biogenic-and-abiogenic-fe-minerals-followed-by-in-situ-incubations-in-an-as-contaminated-vs-non-contaminated-aquifer
#35
JOURNAL ARTICLE
Martyna Glodowska, Magnus Schneider, Elisabeth Eiche, Agnes Kontny, Thomas Neumann, Daniel Straub, Sara Kleindienst, Andreas Kappler
Fe(III) minerals play a crucial role for arsenic (As) mobility in aquifers as they usually represent the main As-bearing phases. Microbial reductive dissolution of As-bearing Fe(III) minerals is responsible for the release of As and the resulting groundwater contamination in many sites worldwide. So far, in most studies mainly abiogenic iron minerals have been considered. Yet, biogenic minerals that possess different properties to their abiogenic counterparts are also present in the environment. In some environments they dominate the iron mineral inventory but so far, it is unclear what this means for the As mobility...
July 15, 2021: Environmental Pollution
https://read.qxmd.com/read/33649339/potentially-bioavailable-iron-produced-through-benthic-cycling-in-glaciated-arctic-fjords-of-svalbard
#36
JOURNAL ARTICLE
Katja Laufer-Meiser, Alexander B Michaud, Markus Maisch, James M Byrne, Andreas Kappler, Molly O Patterson, Hans Røy, Bo Barker Jørgensen
The Arctic has the highest warming rates on Earth. Glaciated fjord ecosystems, which are hotspots of carbon cycling and burial, are extremely sensitive to this warming. Glaciers are important for the transport of iron from land to sea and supply this essential nutrient to phytoplankton in high-latitude marine ecosystems. However, up to 95% of the glacially-sourced iron settles to sediments close to the glacial source. Our data show that while 0.6-12% of the total glacially-sourced iron is potentially bioavailable, biogeochemical cycling in Arctic fjord sediments converts the glacially-derived iron into more labile phases, generating up to a 9-fold increase in the amount of potentially bioavailable iron...
March 1, 2021: Nature Communications
https://read.qxmd.com/read/33630763/beryllium-specific-cd4-t-cells-induced-by-chemokine-neoantigens-perpetuate-inflammation
#37
JOURNAL ARTICLE
Michael T Falta, Jeremy C Crawford, Alex N Tinega, Laurie G Landry, Frances Crawford, Douglas G Mack, Allison K Martin, Shaikh M Atif, Li Li, Radleigh G Santos, Maki Nakayama, John W Kappler, Lisa A Maier, Paul G Thomas, Clemencia Pinilla, Andrew P Fontenot
Discovering dominant epitopes for T cells, particularly CD4+ T cells, in human immune-mediated diseases remains a significant challenge. Here, we used bronchoalveolar lavage (BAL) cells from HLA-DP2-expressing patients with chronic beryllium disease (CBD), a debilitating granulomatous lung disorder characterized by accumulations of beryllium-specific (Be-specific) CD4+ T cells in the lung. We discovered lung-resident CD4+ T cells that expressed a disease-specific public CDR3β T cell receptor motif and were specific to Be-modified self-peptides derived from C-C motif ligand 4 (CCL4) and CCL3...
May 3, 2021: Journal of Clinical Investigation
https://read.qxmd.com/read/33526911/an-evolving-view-on-biogeochemical-cycling-of-iron
#38
REVIEW
Andreas Kappler, Casey Bryce, Muammar Mansor, Ulf Lueder, James M Byrne, Elizabeth D Swanner
Biogeochemical cycling of iron is crucial to many environmental processes, such as ocean productivity, carbon storage, greenhouse gas emissions and the fate of nutrients, toxic metals and metalloids. Knowledge of the underlying processes involved in iron cycling has accelerated in recent years along with appreciation of the complex network of biotic and abiotic reactions dictating the speciation, mobility and reactivity of iron in the environment. Recent studies have provided insights into novel processes in the biogeochemical iron cycle such as microbial ammonium oxidation and methane oxidation coupled to Fe(III) reduction...
June 2021: Nature Reviews. Microbiology
https://read.qxmd.com/read/33303752/iron-mineral-dissolution-releases-iron-and-associated-organic-carbon-during-permafrost-thaw
#39
JOURNAL ARTICLE
Monique S Patzner, Carsten W Mueller, Miroslava Malusova, Moritz Baur, Verena Nikeleit, Thomas Scholten, Carmen Hoeschen, James M Byrne, Thomas Borch, Andreas Kappler, Casey Bryce
It has been shown that reactive soil minerals, specifically iron(III) (oxyhydr)oxides, can trap organic carbon in soils overlying intact permafrost, and may limit carbon mobilization and degradation as it is observed in other environments. However, the use of iron(III)-bearing minerals as terminal electron acceptors in permafrost environments, and thus their stability and capacity to prevent carbon mobilization during permafrost thaw, is poorly understood. We have followed the dynamic interactions between iron and carbon using a space-for-time approach across a thaw gradient in Abisko (Sweden), where wetlands are expanding rapidly due to permafrost thaw...
December 10, 2020: Nature Communications
https://read.qxmd.com/read/33149170/reusable-magnetite-nanoparticles-biochar-composites-for-the-efficient-removal-of-chromate-from-water
#40
JOURNAL ARTICLE
Md Samrat Alam, Brendan Bishop, Ning Chen, Salman Safari, Viola Warter, James M Byrne, Tyler Warchola, Andreas Kappler, Kurt O Konhauser, Daniel S Alessi
Biochar (BC) and magnetite (Fe3 O4 ) nanoparticles (MNP) have both received considerable recent attention in part due to their potential use in water treatment. While both are effective independently in the removal of a range of anionic metals from aqueous solution, the efficacy of these materials is reduced considerably at neutral pH due to decreased metal adsorption and MNP aggregation. In addition to synthetic metal oxide-biochar composites for use in treatment and remediation technologies, aggregates may also occur in nature when pyrolytic carbon is deposited in soils...
November 4, 2020: Scientific Reports
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