keyword
MENU ▼
Read by QxMD icon Read
search

soil biology

keyword
https://www.readbyqxmd.com/read/29149748/in-situ-long-term-modeling-of-phenanthrene-dynamics-in-an-aged-contaminated-soil-using-the-vsoil-platform
#1
Khaled Brimo, Patricia Garnier, François Lafolie, Geoffroy Séré, Stéphanie Ouvrard
Management and remediation actions of polycyclic aromatic hydrocarbons (PAH) contaminated sites require an accurate knowledge of the dynamics of these chemicals in situ under real conditions. Here we developed, under the Virtual Soil Platform, a global model for PAH that describes the principal physical and biological processes controlling the dynamics of PAH in soil under real climatic conditions. The model was applied first to simulate the observed dynamics of phenanthrene in situ field experimental plots of industrial contaminated soil...
November 14, 2017: Science of the Total Environment
https://www.readbyqxmd.com/read/29149640/change-to-ecosystem-properties-through-changing-the-dominant-species-impact-of-pteridium-aquilinum-control-and-heathland-restoration-treatments-on-selected-soil-properties
#2
G Milligan, K E Booth, E S Cox, R J Pakeman, M G Le Duc, L Connor, S Blackbird, R H Marrs
It is well known that soils are influenced by the plant species that grow in them. Here we consider the effects of management-induced changes to plant communities and their soils during restoration within a 20-year manipulative experiment where the aim was to change a late-successional community dominated by the weed, Pteridium aquilinum, to an earlier-successional grass-heath one. The ecological restoration treatments altered the above- and below-ground components of the community substantially. Untreated plots maintained a dense Pteridium cover with little understory vegetation, cutting treatments produce significant reductions of Pteridium, whereas herbicide (asulam) produced significant immediate reductions in Pteridium but regressed towards the untreated plots within 10 years...
November 14, 2017: Journal of Environmental Management
https://www.readbyqxmd.com/read/29147568/environmental-influences-on-the-skin-microbiome-of-humans-and-cattle-in-rural-madagascar
#3
Melissa B Manus, James J Yu, Lawrence P Park, Olaf Mueller, Sarah C Windsor, Julie E Horvath, Charles L Nunn
Background and objectives: The skin harbors a dynamic community of microorganisms, where contact with humans, other animals and the environment can alter microbial communities. Most research on the human skin microbiome features Western populations living in hygienic conditions, yet these populations have vastly different patterns of environmental contact than the majority of people on Earth, including those living in developing countries. Methodology: We studied skin microbial communities of humans and cattle (zebu) in rural Madagascar to investigate how zebu ownership affects microbial composition of the human skin, and to characterize non-Western human and zebu skin communities more generally...
2017: Evolution, Medicine, and Public Health
https://www.readbyqxmd.com/read/29146959/methanogenesis-in-oxygenated-soils-is-a-substantial-fraction-of-wetland-methane-emissions
#4
Jordan C Angle, Timothy H Morin, Lindsey M Solden, Adrienne B Narrowe, Garrett J Smith, Mikayla A Borton, Camilo Rey-Sanchez, Rebecca A Daly, Golnazalsdat Mirfenderesgi, David W Hoyt, William J Riley, Christopher S Miller, Gil Bohrer, Kelly C Wrighton
The current paradigm, widely incorporated in soil biogeochemical models, is that microbial methanogenesis can only occur in anoxic habitats. In contrast, here we show clear geochemical and biological evidence for methane production in well-oxygenated soils of a freshwater wetland. A comparison of oxic to anoxic soils reveal up to ten times greater methane production and nine times more methanogenesis activity in oxygenated soils. Metagenomic and metatranscriptomic sequencing recover the first near-complete genomes for a novel methanogen species, and show acetoclastic production from this organism was the dominant methanogenesis pathway in oxygenated soils...
November 16, 2017: Nature Communications
https://www.readbyqxmd.com/read/29146930/previous-crop-and-rotation-history-effects-on-maize-seedling-health-and-associated-rhizosphere-microbiome
#5
Maria-Soledad Benitez, Shannon L Osborne, R Michael Lehman
To evaluate crop rotation effects on maize seedling performance and its associated microbiome, maize plants were grown in the greenhouse in soils preceded by either maize, pea, soybean or sunflower. Soils originated from a replicated field experiment evaluating different four-year rotation combinations. In the greenhouse, a stressor was introduced by soil infestation with western corn rootworm (WCR) or Fusarium graminearum. Under non-infested conditions, maize seedlings grown in soils preceded by sunflower or pea had greater vigor...
November 16, 2017: Scientific Reports
https://www.readbyqxmd.com/read/29146250/revitalization-of-plant-growth-promoting-rhizobacteria-for-sustainable-development-in-agriculture
#6
REVIEW
Sushanto Gouda, Rout George Kerry, Gitishree Das, Spiros Paramithiotis, Han-Seung Shin, Jayanta Kumar Patra
The progression of life in all forms is not only dependent on agricultural and food security but also on the soil characteristics. The dynamic nature of soil is a direct manifestation of soil microbes, bio-mineralization, and synergistic co-evolution with plants. With the increase in world's population the demand for agriculture yield has increased tremendously and thereby leading to large scale production of chemical fertilizers. Since the use of fertilizers and pesticides in the agricultural fields have caused degradation of soil quality and fertility, thus the expansion of agricultural land with fertile soil is near impossible, hence researchers and scientists have sifted their attention for a safer and productive means of agricultural practices...
January 2018: Microbiological Research
https://www.readbyqxmd.com/read/29145477/the-abundance-of-health-associated-bacteria-is-altered-in-pah-polluted-soils-implications-for-health-in-urban-areas
#7
Anirudra Parajuli, Mira Grönroos, Sari Kauppi, Tomasz Płociniczak, Marja I Roslund, Polina Galitskaya, Olli H Laitinen, Heikki Hyöty, Ari Jumpponen, Rauni Strömmer, Martin Romantschuk, Nan Hui, Aki Sinkkonen
Long-term exposure to polyaromatic hydrocarbons (PAHs) has been connected to chronic human health disorders. It is also well-known that i) PAH contamination alters soil bacterial communities, ii) human microbiome is associated with environmental microbiome, and iii) alteration in the abundance of members in several bacterial phyla is associated with adverse or beneficial human health effects. We hypothesized that soil pollution by PAHs altered soil bacterial communities that had known associations with human health...
2017: PloS One
https://www.readbyqxmd.com/read/29145102/remediation-of-a-soil-chronically-contaminated-with-hydrocarbons-through-persulfate-oxidation-and-bioremediation
#8
Rocío Medina, Pedro Maximiliano David Gara, Antonio José Fernández-González, Janina Alejandra Rosso, María Teresa Del Panno
The impact of remediation combining chemical oxidation followed by biological treatment on soil matrix and microbial community was studied, of a chronically hydrocarbon contaminated soil sourced from a landfarming treatment. Oxidation by ammonium persulfate produced a significant elimination of polycyclic aromatic hydrocarbons (PAHs) and an increase in PAH bioavailability. Organic-matter oxidation mobilized nutrients from the soil matrix. The bacterial populations were affected negatively, with a marked diminution in the diversity indices...
November 13, 2017: Science of the Total Environment
https://www.readbyqxmd.com/read/29143886/rapid-in-situ-assessment-for-predicting-soil-quality-using-an-algae-soaked-disc-seeding-assay
#9
Sun-Hwa Nam, Jongmin Moon, Shin Woong Kim, Hakyeong Kim, Seung-Woo Jeong, Youn-Joo An
The soil quality of remediated land is altered and this land consequently exerts unexpected biological effects on terrestrial organisms. Therefore, field evaluation of such land should be conducted using biological indicators. Algae are a promising new biological indicator since they are a food source for organisms in higher soil trophic levels and easily sampled from the soil. Field evaluation of soil characteristics is preferred to be testing in laboratory conditions because many biological effects cannot be duplicated during laboratory evaluations...
November 16, 2017: Environmental Monitoring and Assessment
https://www.readbyqxmd.com/read/29143258/improvement-of-nitrogen-utilization-and-soil-properties-by-addition-of-a-mineral-soil-conditioner-mechanism-and-performance
#10
Xiaodan Yan, Lin Shi, Rumeng Cai
A mineral soil conditioner (MSC) composed of activated potash feldspar, gypsum, and calcium carbonate and containing an amount of available mineral nutrients, is shown to be effective for plant growth and acidic soil amelioration. In this study, a field test was conducted over four rice seasons by examining treatment with control check (CK), MSC, biological active carbon, and lime to investigate the nitrogen-use efficiency and mechanism of soil characteristic variations due to the desilicification and allitization of soil as well as the unrestrained use of nitrogen (N) fertilizer in recent years...
November 15, 2017: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/29141628/gene-expression-analyses-of-the-small-intestine-of-pigs-in-the-ex-evacuation-zone-of-the-fukushima-daiichi-nuclear-power-plant
#11
Motoko Morimoto, Ayaka Kato, Jin Kobayashi, Kei Okuda, Yoshikazu Kuwahara, Yasushi Kino, Yasuyuki Abe, Tsutomu Sekine, Tomokazu Fukuda, Emiko Isogai, Manabu Fukumoto
BACKGROUND: After the accident at the Fukushima Daiichi Nuclear Power Plant, radioactive contaminants were released over a widespread area. Monitoring the biological effects of radiation exposure in animals in the ex-evacuation zone should be continued to understand the health effects of radiation exposure in humans. The present study aimed to clarify the effects of radiation by investigating whether there is any alteration in the morphology and gene expressions of immune molecules in the intestine of pigs and inobuta (wild boar and domestic pig hybrid) in the ex-evacuation zone in 2012...
November 15, 2017: BMC Veterinary Research
https://www.readbyqxmd.com/read/29137663/patent-landscape-of-neglected-tropical-diseases-an-analysis-of-worldwide-patent-families
#12
Folahanmi Tomiwa Akinsolu, Vitor Nobre de Paiva, Samuel Santos Souza, Orsolya Varga
BACKGROUND: "Neglected Tropical Diseases" (NTDs) affect millions of people in Africa, Asia and South America. The two primary ways of strategic interventions are "preventive chemotherapy and transmission control" (PCT), and "innovative and intensified disease management" (IDM). In the last 5 years, phenomenal progress has been achieved. However, it is crucial to intensify research effort into NTDs, because of the emerging drug resistance. According to the World Health Organization (WHO), the term NTDs covers 17 diseases, namely buruli ulcer, Chagas disease, dengue, dracunculiasis, echinococcosis, trematodiasis, human African trypanosomiasis, leishmaniasis, leprosy, lymphatic filariasis, onchocerciasis, rabies, schistosomiasis, soil-transmitted helminthes, taeniasis, trachoma, and yaws...
November 14, 2017: Globalization and Health
https://www.readbyqxmd.com/read/29134389/exploration-antifungal-and-antiaflatoxigenic-activity-of-halophilic-bacteria-communities-from-saline-soils-of-howze-soltan-playa-in-iran
#13
Samaneh Jafari, Seyed-Soheil Aghaei, Hossein Afifi-Sabet, Masoomeh Shams-Ghahfarokhi, Zahra Jahanshiri, Mohammadhassan Gholami-Shabani, Seyedahmad Shafiei-Darabi, Mehdi Razzaghi-Abyaneh
In the present study, halophilic bacteria communities were explored in saline soils of Howze-Soltan playa in Iran with special attention to their biological activity against an aflatoxigenic Aspergillus parasiticus NRRL 2999. Halophilic bacteria were isolated from a total of 20 saline soils using specific culture media and identified by 16S rRNA sequencing in neighbor-joining tree analysis. Antifungal and antiaflatoxigenic activities of the bacteria were screened by a nor-mutant A. parasiticus NRRL 2999 using visual agar plate assay and confirmed by high-performance liquid chromatography...
November 13, 2017: Extremophiles: Life Under Extreme Conditions
https://www.readbyqxmd.com/read/29134149/the-response-of-soil-microbial-communities-to-variation-in-annual-precipitation-depends-on-soil-nutritional-status-in-an-oligotrophic-desert
#14
Cristina Montiel-González, Yunuen Tapia-Torres, Valeria Souza, Felipe García-Oliva
Background: Soil microbial communities (SMC) play a central role in the structure and function of desert ecosystems. However, the high variability of annual precipitation could results in the alteration of SMC and related biological processes depending on soil water potential. The nature of the physiological adjustments made by SMC in order to obtain energy and nutrients remains unclear under different soil resource availabilities in desert ecosystems. In order to examine this dynamic, the present study examined the effects of variation in annual precipitation on physiological adjustments by the SMC across two vegetation-soil systems of different soil organic matter input in an oligotrophic desert ecosystem...
2017: PeerJ
https://www.readbyqxmd.com/read/29133911/species-pool-distributions-along-functional-trade-offs-shape-plant-productivity-diversity-relationships
#15
Loïc Chalmandrier, Camille Albouy, Loïc Pellissier
Grasslands deliver the resources for food production and are among the most biologically diverse ecosystems. These characteristics are often in conflict as increasing yield through fertilization can lead to biodiversity loss. Thus, the challenge in grassland management is to sustain both yield and diversity. Biodiversity-ecosystem functioning experiments typically reveal a positive relationship between manipulated species diversity and productivity. In contrast, observations of the effect of increasing productivity via fertilization suggest a negative association with biodiversity...
November 13, 2017: Scientific Reports
https://www.readbyqxmd.com/read/29133429/microbial-pathway-for-anaerobic-5-methylthioadenosine-metabolism-coupled-to-ethylene-formation
#16
Justin A North, Anthony R Miller, John A Wildenthal, Sarah J Young, F Robert Tabita
Numerous cellular processes involving S-adenosyl-l-methionine result in the formation of the toxic by-product, 5'-methylthioadenosine (MTA). To prevent inhibitory MTA accumulation and retain biologically available sulfur, most organisms possess the "universal" methionine salvage pathway (MSP). However, the universal MSP is inherently aerobic due to a requirement of molecular oxygen for one of the key enzymes. Here, we report the presence of an exclusively anaerobic MSP that couples MTA metabolism to ethylene formation in the phototrophic bacteria Rhodospirillum rubrum and Rhodopseudomonas palustris In vivo metabolite analysis of gene deletion strains demonstrated that this anaerobic MSP functions via sequential action of MTA phosphorylase (MtnP), 5-(methylthio)ribose-1-phosphate isomerase (MtnA), and an annotated class II aldolase-like protein (Ald2) to form 2-(methylthio)acetaldehyde as an intermediate...
November 13, 2017: Proceedings of the National Academy of Sciences of the United States of America
https://www.readbyqxmd.com/read/29132026/integrated-omics-analysis-of-root-preferred-genes-across-diverse-rice-varieties-including-japonica-and-indica-cultivars
#17
Sunok Moon, Anil Kumar Nalini Chandran, Yun-Shil Gho, Sun-A Park, Sung-Ryul Kim, Yo-Han Yoo, Ki-Hong Jung
Plant root systems play essential roles in developmental processes, such as the absorption of water and inorganic nutrients, and structural support. Gene expression is affected by growth conditions and the genetic background of plants. To identify highly conserved root-preferred genes in rice across diverse growth conditions and varieties, we used two independent meta-anatomical expression profiles based on a large collection of Affymetrix and Agilent 44K microarray data sets available for public use. We then identified 684 loci with root-preferred expression, which were validated with in silico analysis using both meta-expression profiles...
October 26, 2017: Journal of Plant Physiology
https://www.readbyqxmd.com/read/29132002/brassica-napus-has-a-key-role-in-the-recovery-of-the-health-of-soils-contaminated-with-metals-and-diesel-by-rhizoremediation
#18
Rafael G Lacalle, María T Gómez-Sagasti, Unai Artetxe, Carlos Garbisu, José M Becerril
Contaminated soils are frequently characterized by the simultaneous presence of organic and inorganic contaminants, as well as a poor biological and nutritional status. Rhizoremediation, the combined use of phytoremediation and bioremediation, has been proposed as a Gentle Remediation Option to rehabilitate multi-contaminated soils. Recently, newer techniques, such as the application of metallic nanoparticles, are being deployed in an attempt to improve traditional remediation options. In order to implement a phytomanagement strategy on calcareous alkaline peri-urban soils simultaneously contaminated with several metals and diesel, we evaluated the effectiveness of Brassica napus L...
November 10, 2017: Science of the Total Environment
https://www.readbyqxmd.com/read/29131853/transcriptome-analysis-of-crossostephium-chinensis-provides-insight-into-the-molecular-basis-of-salinity-stress-responses
#19
Haiyan Yang, Ming Sun, Shuangji Lin, Yanhong Guo, Yongjuan Yang, Tengxun Zhang, Jingxing Zhang
Soil salinization is becoming a limitation to the utilization of ornamental plants worldwide. Crossostephium chinensis (Linnaeus) Makino is often cultivated along the southeast coast of China for its desirable ornamental qualities and high salt tolerance. However, little is known about the genomic background of the salt tolerance mechanism in C. chinensis. In the present study, we used Illumina paired-end sequencing to systematically investigate leaf transcriptomes derived from C. chinensis seedlings grown under normal conditions and under salt stress...
2017: PloS One
https://www.readbyqxmd.com/read/29129977/preinoculation-of-soybean-seeds-treated-with-agrichemicals-up-to-30-days-before-sowing-technological-innovation-for-large-scale-agriculture
#20
Ricardo Silva Araujo, Sonia Purin da Cruz, Edson Luiz Souchie, Thomas Newton Martin, André Shigueyoshi Nakatani, Marco Antonio Nogueira, Mariangela Hungria
The cultivation of soybean in Brazil experienced an expressive growth in the last decades. Soybean is highly demanding on nitrogen (N) that must come from fertilizers or from biological fixation. The N supply to the soybean crop in Brazil relies on the inoculation with elite strains of Bradyrhizobium japonicum, B. elkanii, and B. diazoefficiens, which are able to fulfill the crop's N requirements and enrich the soil for the following crop. The effectiveness of the association between N2-fixing bacteria and soybean plants depends on the efficacy of the inoculation process...
2017: International Journal of Microbiology
keyword
keyword
61461
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"