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Bioremediation

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https://www.readbyqxmd.com/read/28103027/isolation-colonization-and-chlorpyrifos-degradation-mediation-of-the-endophytic-bacterium-sphingomonas-strain-hjy-in-chinese-chive-allium-tuberosum
#1
Fayun Feng, Jing Ge, Yisong Li, Jinjin Cheng, Jianfeng Zhong, Xiangyang Yu
The interaction of endophyte-plant can benefit the host in many different ways. An endophytic bacterium strain (HJY) capable of degrading chlorpyrifos (CP) was isolated from Chinese chives (Allium tuberosum Rottl. ex Spreng). The isolated bacterium HJY classified as Sphingomonas sp. Strain HJY could use chlorpyrifos as the sole carbon source. After being marked with the gfp gene, the colonization and distribution of strain HJY-gfp was directly observed in different tissues of Chinese chives with confocal laser scanning microscope...
January 19, 2017: Journal of Agricultural and Food Chemistry
https://www.readbyqxmd.com/read/28101613/estimation-of-anaerobic-debromination-rate-constants-of-pbde-pathways-using-an-anaerobic-dehalogenation-model
#2
Filiz Karakas, Ipek Imamoglu
This study aims to estimate anaerobic debromination rate constants (km) of PBDE pathways using previously reported laboratory soil data. km values of pathways are estimated by modifying a previously developed model as Anaerobic Dehalogenation Model. Debromination activities published in the literature in terms of bromine substitutions as well as specific microorganisms and their combinations are used for identification of pathways. The range of estimated km values is between 0.0003 and 0.0241 d(-1). The median and maximum of km values are found to be comparable to the few available biologically confirmed rate constants published in the literature...
January 19, 2017: Bulletin of Environmental Contamination and Toxicology
https://www.readbyqxmd.com/read/28100131/influence-of-activated-sewage-sludge-amendment-on-pahs-removal-efficiency-from-a-naturally-contaminated-soil-application-of-the-landfarming-treatment
#3
Borislava Lukić, David Huguenot, Antonio Panico, Eric D van Hullebusch, Giovanni Esposito
The removal of polycyclic aromatic hydrocarbons (PAHs) from a naturally co-contaminated soil by PAHs and heavy metals with an initial concentration of 620 mg of total PAHs kg(-1) dry soil was investigated. The efficiency of landfarming in removing phenanthrene, pyrene, benzo(a)pyrene and the group of total 16 US EPA PAHs was evaluated. The process was biostimulated by adding centrifuged activated sewage sludge (SS) as an organic amendment. Experimental activities were conducted in four laboratory scale reactors filled with corn cobs as bulking agent to reach bulk density of 640 kg/m(3)...
January 18, 2017: Environmental Technology
https://www.readbyqxmd.com/read/28095107/bioremediation-of-petroleum-wastewater-by-hyper-phenol-tolerant-bacillus-cereus-preliminary-studies-with-laboratory-scale-batch-process
#4
Aditi Banerjee, Aloke K Ghoshal
Petroleum wastewater samples from oil refinery and oil exploration site were treated by hyper phenol-tolerant Bacillus cereus (AKG1 and AKG2) in laboratory-scale batch process to assess their bioremediation efficacy. Quality of the treated wastewater samples were analyzed in terms of removal of chemical oxygen demand (COD), total organic carbon (TOC) and ammonium nitrogen content, and improvement of biological oxygen demand (BOD). Adaptation of these bacteria to the toxic environment through structural changes in their cell membranes was also highlighted...
January 17, 2017: Bioengineered
https://www.readbyqxmd.com/read/28091993/bacterial-community-structure-and-prevalence-of-pusillimonas-like-bacteria-in-aged-landfill-leachate
#5
Nikolaos Remmas, Charikleia Roukouni, Spyridon Ntougias
Although several works have been performed from an engineering point of view, a limited number of studies have focused on microbial communities involved in the humification of aged landfill leachates. In this work, cultivation techniques, next-generation sequencing, and phospholipid fatty acid analysis were adopted to decrypt the diversity and the ecophysiological properties of the dominant microbiota in aged landfill leachate. Based on Illumina sequencing, Betaproteobacteria, Bacteroidetes, Actinobacteria, and Alphaproteobacteria dominated the aged landfill leachate...
January 13, 2017: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/28091789/comparative-investigation-on-a-hexane-degrading-strain-with-different-cell-surface-hydrophobicities-mediated-by-starch-and-chitosan
#6
Dong-Zhi Chen, Ning-Xin Jiang, Jie-Xu Ye, Zhuo-Wei Cheng, Shi-Han Zhang, Jian-Meng Chen
Bioremediation usually exhibits low removal efficiency toward hexane because of poor water solubility, which limits the mass transfer rate between the substrate and microorganism. This work aimed to enhance the hexane degradation rate by increasing cell surface hydrophobicity (CSH) of the degrader, Pseudomonas mendocina NX-1. The CSH of P. mendocina NX-1 was manipulated by treatment with starch and chitosan solution of varied concentrations, reaching a maximum hydrophobicity of 52%. The biodegradation of hexane conformed to the Haldane inhibition model, and the maximum degradation rate (ν max) of the cells with 52% CSH was 0...
January 14, 2017: Applied Microbiology and Biotechnology
https://www.readbyqxmd.com/read/28087535/efficient-low-ph-iron-removal-by-a-microbial-iron-oxide-mound-ecosystem-at-scalp-level-run
#7
Christen L Grettenberger, Alexandra R Pearce, Kyle J Bibby, Daniel S Jones, William D Burgos, Jennifer L Macalady
: Acid mine drainage (AMD) is a major environmental problem affecting tens of thousands of km of waterways worldwide. Passive bioremediation of AMD relies on microbial communities to oxidize and remove iron from the system; however, iron-oxidation rates in AMD environments are highly variable across sites. At Scalp Level Run (Cambria County PA), first-order iron-oxidation rates are ten times faster than at other coal associated iron mounds in the Appalachians. We examined the bacterial community at Scalp Level Run to determine whether a unique community is responsible for the rapid iron oxidation rate...
January 13, 2017: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/28087526/rapid-enrichment-of-dehalococcoides-like-bacteria-by-partial-hydrophobic-separation
#8
Hanna R Temme, Kipp Sande, Tao Yan, Paige J Novak
: Organohalide respiring bacteria can be difficult to enrich and isolate, which can limit research on these important organisms. The goal of this research was to develop a method to rapidly (minutes to days) enrich these organisms from a mixed community. The method presented is based on the hypothesis that organohalide respiring bacteria would be more hydrophobic than other bacteria as they dehalogenate hydrophobic compounds. The developed method tests this hypothesis by separating a portion of putative organohalide respiring bacteria, those phylogenetically related to Dehalococcoides mccartyi, at the interface between a hydrophobic organic solvent and aqueous media...
January 13, 2017: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/28078980/bioremediation-of-toxic-heavy-metals-a-patent-review
#9
Neelam Verma, Rajni Sharma
BACKGROUND: The global industrialization is fulfilling the demands of modern population at the cost of environmental exposure to various contaminants including heavy metals. These heavy metals affect water and soil quality. Moreover these enter into the food chain and exhibit their lethal effects on the human health even when present at slightly higher concentration than required for normal metabolism. To the worst of their part, the heavy metals may become carcinogenic. Henceforth, the efficient removal of heavy metals is the demand of sustainable development...
January 11, 2017: Recent Patents on Biotechnology
https://www.readbyqxmd.com/read/28078431/degradation-of-di-2-ethylhexyl-phthalate-by-a-novel-gordonia-alkanivorans-strain-yc-rl2
#10
Ruth Nahurira, Lei Ren, Jinlong Song, Yang Jia, Junhuan Wang, Shuanghu Fan, Haisheng Wang, Yanchun Yan
One bacterial strain, YC-RL2, isolated from petroleum-contaminated soil, could utilize environmental hormone Di(2-Ethylhexyl) phthalate (DEHP) as a sole carbon source for growth. Strain YC-RL2 was identified as Gordonia alkanivorans by 16S rRNA gene analysis and Biolog tests. The effects of environmental factors which might affect the degrading process were optimized at 30 °C and pH 8.0. Strain YC-RL2 showed superior halotolerance and could tolerate up to 0-5% NaCl in trace element medium supplemented with DEHP, although the DEHP degradation rates slowed as NaCl concentration increased...
January 12, 2017: Current Microbiology
https://www.readbyqxmd.com/read/28075122/acetylene-fuels-tce-reductive-dechlorination-by-defined-dehalococcoides-pelobacter-consortia
#11
Xinwei Mao, Ronald S Oremland, Tong Liu, Sara Gushgari, Abigail Amanda Landers, Shaun M Baesman, Lisa Alvarez-Cohen
Acetylene (C2H2) can be generated in contaminated groundwater sites as a consequence of chemical degradation of trichloroethene (TCE) by in situ minerals, and C2H2 is known to inhibit bacterial dechlorination. In this study, we show that while high C2H2 (1.3 mM) concentrations reversibly inhibit reductive dechlorination of TCE by Dehalococcoides mccartyi isolates as well as enrichment cultures containing D. mccartyi sp., low C2H2 (0.4 mM) concentrations do not inhibit growth or metabolism of D. mccartyi. Co-cultures of Pelobacter SFB93, a C2H2-fermenting bacterium, with D...
January 11, 2017: Environmental Science & Technology
https://www.readbyqxmd.com/read/28074219/bioremediation-of-mercury-not-properly-exploited-in-contaminated-soils
#12
REVIEW
Khandaker Rayhan Mahbub, Md Mezbaul Bahar, Maurizio Labbate, Kannan Krishnan, Stuart Andrews, Ravi Naidu, Mallavarapu Megharaj
Contamination of land and water caused by heavy metal mercury (Hg) poses a serious threat to biota worldwide. The seriousness of toxicity of this neurotoxin is characterized by its ability to augment in food chains and bind to thiol groups in living tissue. Therefore, different remediation approaches have been implemented to rehabilitate Hg-contaminated sites. Bioremediation is considered as cheaper and greener technology than the conventional physico-chemical means. Large-scale use of Hg-volatilizing bacteria are used to clean up Hg-contaminated waters, but there is no such approach to remediate Hg-contaminated soils...
February 2017: Applied Microbiology and Biotechnology
https://www.readbyqxmd.com/read/28068401/advantages-of-synthetic-noise-and-machine-learning-for-analyzing-radioecological-data-sets
#13
Igor Shuryak
The ecological effects of accidental or malicious radioactive contamination are insufficiently understood because of the hazards and difficulties associated with conducting studies in radioactively-polluted areas. Data sets from severely contaminated locations can therefore be small. Moreover, many potentially important factors, such as soil concentrations of toxic chemicals, pH, and temperature, can be correlated with radiation levels and with each other. In such situations, commonly-used statistical techniques like generalized linear models (GLMs) may not be able to provide useful information about how radiation and/or these other variables affect the outcome (e...
2017: PloS One
https://www.readbyqxmd.com/read/28063314/construction-of-pah-degrading-mixed-microbial-consortia-by-induced-selection-in-soil
#14
German Zafra, Ángel E Absalón, Miguel Ángel Anducho-Reyes, Francisco J Fernandez, Diana V Cortés-Espinosa
Bioremediation of polycyclic aromatic hydrocarbons (PAHs)-contaminated soils through the biostimulation and bioaugmentation processes can be a strategy for the clean-up of oil spills and environmental accidents. In this work, an induced microbial selection method using PAH-polluted soils was successfully used to construct two microbial consortia exhibiting high degradation levels of low and high molecular weight PAHs. Six fungal and seven bacterial native strains were used to construct mixed consortia with the ability to tolerate high amounts of phenanthrene (Phe), pyrene (Pyr) and benzo(a)pyrene (BaP) and utilize these compounds as a sole carbon source...
December 21, 2016: Chemosphere
https://www.readbyqxmd.com/read/28061393/screening-selectively-harnessed-environmental-microbial-communities-for-biodegradation-of-polycyclic-aromatic-hydrocarbons-in-moving-bed-biofilm-reactors
#15
Marc A Demeter, Joseph A Lemire, Sean M Mercer, Raymond J Turner
Bacteria are often found tolerating polluted environments. Such bacteria may be exploited to bioremediate contaminants in controlled ex situ reactor systems. One potential strategic goal of such systems is to harness microbes directly from the environment such that they exhibit the capacity to markedly degrade organic pollutants of interest. Here, the use of biofilm cultivation techniques to inoculate and activate moving bed biofilm reactor (MBBR) systems for the degradation of polycyclic aromatic hydrocarbons (PAHs) was explored...
December 24, 2016: Bioresource Technology
https://www.readbyqxmd.com/read/28061345/bioaugmentation-as-a-strategy-for-the-remediation-of-pesticide-polluted-soil-a-review
#16
REVIEW
Mariusz Cycoń, Agnieszka Mrozik, Zofia Piotrowska-Seget
Bioaugmentation, a green technology, is defined as the improvement of the degradative capacity of contaminated areas by introducing specific microorganisms, has emerged as the most advantageous method for cleaning-up soil contaminated with pesticides. The present review discusses the selection of pesticide-utilising microorganisms from various sources, their potential for the degradation of pesticides from different chemical classes in liquid media as well as soil-related case studies in a laboratory, a greenhouse and field conditions...
December 26, 2016: Chemosphere
https://www.readbyqxmd.com/read/28058522/identification-and-characterization-of-a-novel-carboxylesterase-fpbh-that-hydrolyzes-aryloxyphenoxypropionate-herbicides
#17
Chenghong Wang, Jiguo Qiu, Youjian Yang, Jinwei Zheng, Jian He, Shunpeng Li
OBJECTIVE: To identify and characterize a novel aryloxyphenoxypropionate (AOPP) herbicide-hydrolyzing carboxylesterase from Aquamicrobium sp. FPB-1. RESULTS: A carboxylesterase gene, fpbH, was cloned from Aquamicrobium sp. FPB-1. The gene is 798 bp long and encodes a protein of 265 amino acids. FpbH is smaller than previously reported AOPP herbicide-hydrolyzing carboxylesterases and shares only 21-35% sequence identity with them. FpbH was expressed in Escherichia coli BL21(DE3) and the product was purified by Ni-NTA affinity chromatography...
January 5, 2017: Biotechnology Letters
https://www.readbyqxmd.com/read/28054716/arsenic-resistance-genes-of-as-resistant-purple-nonsulfur-bacteria-isolated-from-as-contaminated-sites-for-bioremediation-application
#18
Phitthaya Nookongbut, Duangporn Kantachote, Kannan Krishnan, Mallavarapu Megharaj
This study aimed to identify arsenic resistant mechanisms in As-resistant purple nonsulfur bacteria (PNSB) by screening them for presence of As-resistance genes and related enzymes. Resistance to As(III) and As(V) of four As-resistant PNSB determined in terms of median inhibition concentration (IC50 values) were in the order of strains Rhodopseudomonas palustris C1 > R. palustris AB3 > Rubrivivax benzoatilyticus C31 > R. palustris L28 which corresponded to the presence of As-resistance genes in these bacteria...
January 5, 2017: Journal of Basic Microbiology
https://www.readbyqxmd.com/read/28051295/long-term-immobilization-of-technetium-via-bioremediation-with-slow-release-substrates
#19
Laura Newsome, Adrian Cleary, Katherine Morris, Jonathan R Lloyd
Radionuclides are present in groundwater at contaminated nuclear facilities with technetium-99 one of the most mobile radionuclides encountered. In situ bioremediation via the generation of microbially-reducing conditions has the potential to remove aqueous and mobile Tc(VII) from groundwater as insoluble Tc(IV). However, questions remain regarding the optimal methods of biostimulation and the stability of reduced Tc(IV) phases under oxic conditions. Here, we selected a range of slow-release electron donor / chemical reduction based substrates available for contaminated land treatment, and assessed their potential to stimulate the formation of recalcitrant Tc(IV) biominerals under conditions relevant to radioactively contaminated land...
January 4, 2017: Environmental Science & Technology
https://www.readbyqxmd.com/read/28050848/microbial-communities-in-pyrene-amended-soil-compost-mixture-and-fertilized-soil
#20
Iris K U Adam, Márcia Duarte, Jananan Pathmanathan, Anja Miltner, Thomas Brüls, Matthias Kästner
Polycyclic aromatic hydrocarbons are distributed ubiquitously in the environment and form metabolites toxic to most organisms. Organic amendment of PAH contaminated soil with compost and farmyard manure has proven to be efficient for PAH bioremediation mediated by native microorganisms, even though information on the identity of PAH degraders in organic-amended soil is still scarce. Here we provide molecular insight into the bacterial communities in soil amended with compost or farmyard manure for which the degradation mass balances of (13)C-labeled pyrene have been recently published and assess the relevant bacterial genera capable of degrading pyrene as a model PAH...
December 2017: AMB Express
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