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Nitrate reducing bacteria

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https://www.readbyqxmd.com/read/28774270/strand-specific-transcriptomes-of-enterohemorrhagic-escherichia-coli-in-response-to-interactions-with-ground-beef-microbiota-interactions-between-microorganisms-in-raw-meat
#1
Wessam Galia, Francoise Leriche, Stéphane Cruveiller, Cindy Garnier, Vincent Navratil, Audrey Dubost, Stéphanie Blanquet-Diot, Delphine Thevenot-Sergentet
BACKGROUND: Enterohemorrhagic Escherichia coli (EHEC) are zoonotic agents associated with outbreaks worldwide. Growth of EHEC strains in ground beef could be inhibited by background microbiota that is present initially at levels greater than that of the pathogen E. coli. However, how the microbiota outcompetes the pathogenic bacteria is unknown. Our objective was to identify metabolic pathways of EHEC that were altered by natural microbiota in order to improve our understanding of the mechanisms controlling the growth and survival of EHECs in ground beef...
August 3, 2017: BMC Genomics
https://www.readbyqxmd.com/read/28735386/the-performance-and-microbial-communities-of-biodegradation-electron-transfer-with-sulfur-metabolism-integrated-process-for-flue-gas-desulfurization-wastewater-treatment
#2
Chao Wei, Wenjie He, Li Wei, Jun Ma, Chunying Li
The biodegradation-electron transfer with sulfur metabolism integrated (BESI(®)) process was used for the treatment of real flue gas desulfurization wastewater. The BESI(®) process consists of an anaerobic activated sludge reactor, an anoxic activated sludge reactor, and an aerobic bio-film reactor. The performance of the integrated process was evaluated by the removal efficiencies of organics and nitrogen pollutants. The sulfate in the wastewater was used as an abundant sulfur source to drive the integrated process...
July 22, 2017: Bioprocess and Biosystems Engineering
https://www.readbyqxmd.com/read/28729646/climate-oscillations-reflected-within-the-microbiome-of-arabian-sea-sediments
#3
William D Orsi, Marco J L Coolen, Cornelia Wuchter, Lijun He, Kuldeep D More, Xabier Irigoien, Guillem Chust, Carl Johnson, Jordon D Hemingway, Mitchell Lee, Valier Galy, Liviu Giosan
Selection of microorganisms in marine sediment is shaped by energy-yielding electron acceptors for respiration that are depleted in vertical succession. However, some taxa have been reported to reflect past depositional conditions suggesting they have experienced weak selection after burial. In sediments underlying the Arabian Sea oxygen minimum zone (OMZ), we performed the first metagenomic profiling of sedimentary DNA at centennial-scale resolution in the context of a multi-proxy paleoclimate reconstruction...
July 20, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28726125/nitrogen-assimilation-in-denitrifier-bacillus-azotoformans-lmg-9581-t
#4
Yihua Sun, Paul De Vos, Anne Willems
Until recently, it has not been generally known that some bacteria can contain the gene inventory for both denitrification and dissimilatory nitrate (NO3(-))/nitrite (NO2(-)) reduction to ammonium (NH4(+)) (DNRA). Detailed studies of these microorganisms could shed light on the differentiating environmental drivers of both processes without interference of organism-specific variation. Genome analysis of Bacillus azotoformans LMG 9581(T) shows a remarkable redundancy of dissimilatory nitrogen reduction, with multiple copies of each denitrification gene as well as DNRA genes nrfAH, but a reduced capacity for nitrogen assimilation, with no nas operon nor amtB gene...
July 19, 2017: Antonie Van Leeuwenhoek
https://www.readbyqxmd.com/read/28720728/disguised-as-a-sulfate-reducer-growth-of-the-deltaproteobacterium-desulfurivibrio-alkaliphilus-by-sulfide-oxidation-with-nitrate
#5
Casper Thorup, Andreas Schramm, Alyssa J Findlay, Kai W Finster, Lars Schreiber
This study demonstrates that the deltaproteobacterium Desulfurivibrio alkaliphilus can grow chemolithotrophically by coupling sulfide oxidation to the dissimilatory reduction of nitrate and nitrite to ammonium. Key genes of known sulfide oxidation pathways are absent from the genome of D. alkaliphilus Instead, the genome contains all of the genes necessary for sulfate reduction, including a gene for a reductive-type dissimilatory bisulfite reductase (DSR). Despite this, growth by sulfate reduction was not observed...
July 18, 2017: MBio
https://www.readbyqxmd.com/read/28717594/effect-of-freshwater-mussels-on-the-vertical-distribution-of-anaerobic-ammonia-oxidizers-and-other-nitrogen-transforming-microorganisms-in-upper-mississippi-river-sediment
#6
Ellen M Black, Michael S Chimenti, Craig L Just
Targeted qPCR and non-targeted amplicon sequencing of 16S rRNA genes within sediment layers identified the anaerobic ammonium oxidation (anammox) niche and characterized microbial community changes attributable to freshwater mussels. Anammox bacteria were normally distributed (Shapiro-Wilk normality test, W-statistic =0.954, p = 0.773) between 1 and 15 cm depth and were increased by a factor of 2.2 (p < 0.001) at 3 cm below the water-sediment interface when mussels were present. Amplicon sequencing of sediment at depths relevant to mussel burrowing (3 and 5 cm) showed that mussel presence reduced observed species richness (p = 0...
2017: PeerJ
https://www.readbyqxmd.com/read/28715664/electron-transfer-mediators-accelerated-the-microbiologically-influence-corrosion-against-carbon-steel-by-nitrate-reducing-pseudomonas-aeruginosa-biofilm
#7
Ru Jia, Dongqing Yang, Dake Xu, Tingyue Gu
Electron transfer is a rate-limiting step in microbiologically influenced corrosion (MIC) caused by microbes that utilize extracellular electrons. Cross-cell wall electron transfer is necessary to transport the electrons released from extracellular iron oxidation into the cytoplasm of cells. Electron transfer mediators were found to accelerate the MIC caused by sulfate reducing bacteria. However, there is no publication in the literature showing the effect of electron transfer mediators on MIC caused by nitrate reducing bacteria (NRB)...
June 29, 2017: Bioelectrochemistry
https://www.readbyqxmd.com/read/28680423/control-of-sulfide-production-in-high-salinity-bakken-shale-oil-reservoirs-by-halophilic-bacteria-reducing-nitrate-to-nitrite
#8
Biwen A An, Yin Shen, Gerrit Voordouw
Microbial communities in shale oil fields are still poorly known. We obtained samples of injection, produced and facility waters from a Bakken shale oil field in Saskatchewan, Canada with a resident temperature of 60°C. The injection water had a lower salinity (0.7 Meq of NaCl) than produced or facility waters (0.6-3.6 Meq of NaCl). Salinities of the latter decreased with time, likely due to injection of low salinity water, which had 15-30 mM sulfate. Batch cultures of field samples showed sulfate-reducing and nitrate-reducing bacteria activities at different salinities (0, 0...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28672697/stratification-of-chlorinated-ethenes-natural-attenuation-in-an-alluvial-aquifer-assessed-by-hydrochemical-and-biomolecular-tools
#9
Jan Němeček, Iva Dolinová, Jiřina Macháčková, Roman Špánek, Alena Ševců, Tomáš Lederer, Miroslav Černík
Biomolecular and hydrochemical tools were used to evaluate natural attenuation of chlorinated ethenes in a Quaternary alluvial aquifer located close to a historical source of large-scale tetrachloroethylene (PCE) contamination. Distinct stratification of redox zones was observed, despite the aquifer's small thickness (2.8 m). The uppermost zone of the target aquifer was characterised by oxygen- and nitrate-reducing conditions, with mixed iron- to sulphate-reducing conditions dominant in the lower zone, along with indications of methanogenesis...
October 2017: Chemosphere
https://www.readbyqxmd.com/read/28664513/comparative-genome-analysis-of-the-flavobacteriales-bacterium-strain-uj101-isolated-from-the-gut-of-atergatis-reticulatus
#10
Jhung-Ahn Yang, Sung-Hyun Yang, Junghee Kim, Kae Kyoung Kwon, Hyun-Myung Oh
Here we report the comparative genomic analysis of strain UJ101 with 15 strains from the family Flavobacteriaceae, using the CGExplorer program. Flavobacteriales bacterium strain UJ101 was isolated from a xanthid crab, Atergatis reticulatus, from the East Sea near Korea. The complete genome of strain UJ101 is a 3,074,209 bp, single, circular chromosome with 30.74% GC content. While the UJ101 genome contains a number of annotated genes for many metabolic pathways, such as the Embden-Meyerhof pathway, the pentose phosphate pathway, the tricarboxylic acid (TCA) cycle, and the glyoxylate cycle, genes for the Entner-Douddoroff pathway are not found in the UJ101 genome...
July 2017: Journal of Microbiology / the Microbiological Society of Korea
https://www.readbyqxmd.com/read/28649414/characterisation-and-comparison-of-bacterial-communities-on-reverse-osmosis-membranes-of-a-full-scale-desalination-plant-by-bacterial-16s-rrna-gene-metabarcoding
#11
Veena Nagaraj, Lucy Skillman, Goen Ho, Dan Li, Alexander Gofton
Microbiomes of full-scale seawater reverse osmosis membranes are complex and subject to variation within and between membrane units. The pre-existing bacterial communities of unused membranes before operation have been largely ignored in biofouling studies. This study is novel as unused membranes were used as a critical benchmark for comparison. Fouled seawater reverse osmosis membrane biofilm communities from an array of autopsied membrane samples, following a 7-year operational life-span in a full-scale desalination plant in Western Australia, were characterised by 16S rRNA gene metabarcoding using the bacterial primers 515F and 806R...
2017: NPJ Biofilms and Microbiomes
https://www.readbyqxmd.com/read/28620357/the-effectiveness-of-nitrate-mediated-control-of-the-oil-field-sulfur-cycle-depends-on-the-toluene-content-of-the-oil
#12
Navreet Suri, Johanna Voordouw, Gerrit Voordouw
The injection of nitrate is one of the most commonly used technologies to impact the sulfur cycle in subsurface oil fields. Nitrate injection enhances the activity of nitrate-reducing bacteria, which produce nitrite inhibiting sulfate-reducing bacteria (SRB). Subsequent reduction of nitrate to di-nitrogen (N2) alleviates the inhibition of SRB by nitrite. It has been shown for the Medicine Hat Glauconitic C (MHGC) field, that alkylbenzenes especially toluene are important electron donors for the reduction of nitrate to nitrite and N2...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28611179/papers-of-note-in-science356-6342
#13
Annalisa M VanHook
This week's articles explore the structural basis for nitrate sensing in bacteria, the importance of attenuating healing responses to reduce fibrosis and allergy, and the recruitment of chromatin silencing factors in X chromosome inactivation.
June 13, 2017: Science Signaling
https://www.readbyqxmd.com/read/28593806/a-nitrogen-removal-system-to-limit-water-exchange-for-recirculating-freshwater-aquarium-using-dhs-usb-reactor
#14
Nur Adlin, Norihisa Matsuura, Yuki Ohta, Yuga Hirakata, Shinya Maki, Masashi Hatamoto, Takashi Yamaguchi
This study proposes a biological nitrogen removal system for freshwater aquaria consisting of a down-flow hanging sponge (DHS) and an up-flow sludge blanket (USB). DHS-USB systems can perform nitrification and denitrification simultaneously, reducing ammonia (NH3) and nitrate (NO3(-)) toxicity in the water. The performance of the system was evaluated using on-site fresh water aquaria at ambient temperature (23-34°C) over 192 days. NH3 and nitrite (NO2(-)) were maintained at a detection limit of 0.01 mg N L(-1) and NO3(-) was maintained below 10 mg N L(-1), despite limited water exchange...
June 13, 2017: Environmental Technology
https://www.readbyqxmd.com/read/28585561/nitrogen-transformations-in-modern-agriculture-and-the-role-of-biological-nitrification-inhibition
#15
REVIEW
Devrim Coskun, Dev T Britto, Weiming Shi, Herbert J Kronzucker
The nitrogen (N)-use efficiency of agricultural plants is notoriously poor. Globally, about 50% of the N fertilizer applied to cropping systems is not absorbed by plants, but lost to the environment as ammonia (NH3), nitrate (NO3(-)), and nitrous oxide (N2O, a greenhouse gas with 300 times the heat-trapping capacity of carbon dioxide), raising agricultural production costs and contributing to pollution and climate change. These losses are driven by volatilization of NH3 and by a matrix of nitrification and denitrification reactions catalysed by soil microorganisms (chiefly bacteria and archaea)...
June 6, 2017: Nature Plants
https://www.readbyqxmd.com/read/28585174/a-patent-landscape-on-application-of-microorganisms-in-construction-industry
#16
REVIEW
Dipti Dapurkar, Manasi Telang
Construction biotechnology includes research and development of construction materials and processes that make use of various microbes. The present technology landscape gives a perspective on how microbes have been used in construction industry as cement and concrete additives by analyzing patents filed in this technology arena. All patents related to the technology of interest published globally to date have been reviewed. The earliest patent filing in this technology domain was recorded in the year 1958 and the patenting activity reached its peak around mid to late 1990s...
July 2017: World Journal of Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28554256/integration-of-methane-removal-in-aerobic-anammox-based-granular-sludge-reactors
#17
Celia M Castro-Barros, Long T Ho, Mari K H Winkler, Eveline I P Volcke
Combined partial nitritation-anaerobic ammonium oxidation (anammox) processes have been widely applied for nitrogen removal from anaerobic digestion reject water. However, such streams also contain dissolved methane that can escape to the atmosphere, hence contributing to global warming. This study investigates the possibility of integrating methane removal in aerobic anammox-based granular sludge reactors, through modelling and simulation. Methane removal could be established through aerobic methane-oxidizing bacteria (MOB), denitrifying anaerobic methane-oxidizing bacteria (damoB, NO2(-) + CH4à N2 + CO2), and/or archaea (damoA, NO3(-) + CH4à NO2(-) + CO2)...
June 8, 2017: Environmental Technology
https://www.readbyqxmd.com/read/28554073/facile-synthesis-of-heterostructured-cerium-oxide-yttrium-oxide-nanocomposite-in-uv-light-induced-photocatalytic-degradation-and-catalytic-reduction-synergistic-effect-of-antimicrobial-studies
#18
C Maria Magdalane, K Kaviyarasu, J Judith Vijaya, B Siddhardha, B Jeyaraj
Ceria (CeO2) is an exciting alternative noble metal catalyst, because it has ability to release and absorb oxygen in the redox system, and function as an oxygen buffer. In this study, heterostructured catalysts consisting of CeO2/Y2O3 nanocomposites were successfully synthesized by hydrothermal method in the presence of sodium hydroxide as a reducing agent from cerium nitrate and yttrium nitrate as a precursor which was then evaluated for its photocatalytic activity in the degradation of Rhodamine B (RhB) synthetic dye...
May 20, 2017: Journal of Photochemistry and Photobiology. B, Biology
https://www.readbyqxmd.com/read/28537018/syntrophic-association-and-performance-of-clostridium-desulfovibrio-aeromonas-and-tetrathiobacter-as-anodic-biocatalysts-for-bioelectricity-generation-in-dual-chamber-microbial-fuel-cell
#19
Smita S Kumar, Sandeep K Malyan, Suddhasatwa Basu, Narsi R Bishnoi
Anode chamber of a dual chamber microbial fuel cell (MFC) having raw landfill leachate was inoculated with consortium of sulphate-reducing bacteria (SRB) and sulphide-oxidizing bacteria (SOB) to study the phylogenetic architecture, function and mutualism of anolyte community developed in the reactor. Enriched microbial community was analysed with the help of Illumina MiSeq and indicated the dominance of Firmicutes (41.4%), Clostridia (36.4%) and Clostridium (12.9%) at phylum, class and genus level, respectively...
July 2017: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/28533768/novel-large-sulfur-bacteria-in-the-metagenomes-of-groundwater-fed-chemosynthetic-microbial-mats-in-the-lake-huron-basin
#20
Allison M Sharrar, Beverly E Flood, Jake V Bailey, Daniel S Jones, Bopaiah A Biddanda, Steven A Ruberg, Daniel N Marcus, Gregory J Dick
Little is known about large sulfur bacteria (LSB) that inhabit sulfidic groundwater seeps in large lakes. To examine how geochemically relevant microbial metabolisms are partitioned among community members, we conducted metagenomic analysis of a chemosynthetic microbial mat in the Isolated Sinkhole, which is in a deep, aphotic environment of Lake Huron. For comparison, we also analyzed a white mat in an artesian fountain that is fed by groundwater similar to Isolated Sinkhole, but that sits in shallow water and is exposed to sunlight...
2017: Frontiers in Microbiology
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