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https://www.readbyqxmd.com/read/29330694/volatile-compounds-from-beneficial-or-pathogenic-bacteria-differentially-regulate-root-exudation-transcription-of-iron-transporters-and-defense-signaling-pathways-in-sorghum-bicolor
#1
Erasto Hernández-Calderón, Maria Elizabeth Aviles-Garcia, Diana Yazmín Castulo-Rubio, Lourdes Macías-Rodríguez, Vicente Montejano Ramírez, Gustavo Santoyo, José López-Bucio, Eduardo Valencia-Cantero
Our results show that Sorghum bicolor is able to recognize bacteria through its volatile compounds and differentially respond to beneficial or pathogens via eliciting nutritional or defense adaptive traits. Plants establish beneficial, harmful, or neutral relationships with bacteria. Plant growth promoting rhizobacteria (PGPR) emit volatile compounds (VCs), which may act as molecular cues influencing plant development, nutrition, and/or defense. In this study, we compared the effects of VCs produced by bacteria with different lifestyles, including Arthrobacter agilis UMCV2, Bacillus methylotrophicus M4-96, Sinorhizobium meliloti 1021, the plant pathogen Pseudomonas aeruginosa PAO1, and the commensal rhizobacterium Bacillus sp...
January 12, 2018: Plant Molecular Biology
https://www.readbyqxmd.com/read/29330649/growth-of-leptospirillum-ferriphilum-in-sulfur-medium-in-co-culture-with-acidithiobacillus-caldus
#2
Sarah L Smith, D Barrie Johnson
Leptospirillum ferriphilum and Acidithiobacillus caldus are both thermotolerant acidophilic bacteria that frequently co-exist in natural and man-made environments, such as biomining sites. Both are aerobic chemolithotrophs; L. ferriphilum is known only to use ferrous iron as electron donor, while A. caldus can use zero-valent and reduced sulfur, and also hydrogen, as electron donors. It has recently been demonstrated that A. caldus reduces ferric iron to ferrous when grown aerobically on sulfur. Experiments were carried out which demonstrated that this allowed L...
January 12, 2018: Extremophiles: Life Under Extreme Conditions
https://www.readbyqxmd.com/read/29330185/the-mgte-homolog-fici-acts-as-a-secondary-ferrous-iron-importer-in-shewanella-oneidensis-strain-mr-1
#3
Brittany D Bennett, Kaitlyn E Redford, Jeffrey A Gralnick
The transport of metals into and out of cells is necessary for the maintenance of appropriate intracellular concentrations. Metals are needed for incorporation into metalloproteins but become toxic at higher concentrations. Many metal transport proteins have been discovered in bacteria, including the Mg2+ transporter-E (MgtE) family of passive Mg2+/Co2+ cation-selective channels. Low sequence identity exists between members of the MgtE family, indicating that substrate specificity may differ among MgtE transporters...
January 12, 2018: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/29324800/hepcidin-deficiency-and-iron-deficiency-do-not-alter-tuberculosis-susceptibility-in-a-murine-m-tb-infection-model
#4
Rachel Harrington-Kandt, Elena Stylianou, Lucy A Eddowes, Pei Jin Lim, Lisa Stockdale, Nawamin Pinpathomrat, Naomi Bull, Janet Pasricha, Marta Ulaszewska, Yulia Beglov, Sophie Vaulont, Hal Drakesmith, Helen McShane
Tuberculosis (TB), caused by the macrophage-tropic pathogen Mycobacterium tuberculosis (M.tb) is a highly prevalent infectious disease. Since an immune correlate of protection or effective vaccine have yet to be found, continued research into host-pathogen interactions is important. Previous literature reports links between host iron status and disease outcome for many infections, including TB. For some extracellular bacteria, the iron regulatory hormone hepcidin is essential for protection against infection...
2018: PloS One
https://www.readbyqxmd.com/read/29321692/geobacteraceae-are-important-members-of-mercury-methylating-microbial-communities-of-sediments-impacted-by-waste-water-releases
#5
Andrea G Bravo, Jakob Zopfi, Moritz Buck, Jingying Xu, Stefan Bertilsson, Jeffra K Schaefer, John Poté, Claudia Cosio
Microbial mercury (Hg) methylation in sediments can result in bioaccumulation of the neurotoxin methylmercury (MMHg) in aquatic food webs. Recently, the discovery of the gene hgcA, required for Hg methylation, revealed that the diversity of Hg methylators is much broader than previously thought. However, little is known about the identity of Hg-methylating microbial organisms and the environmental factors controlling their activity and distribution in lakes. Here, we combined high-throughput sequencing of 16S rRNA and hgcA genes with the chemical characterization of sediments impacted by a waste water treatment plant that releases significant amounts of organic matter and iron...
January 10, 2018: ISME Journal
https://www.readbyqxmd.com/read/29313157/microbial-community-response-reveals-underlying-mechanism-of-industrial-scale-manganese-sand-biofilters-used-for-the-simultaneous-removal-of-iron-manganese-and-ammonia-from-groundwater
#6
Yu Zhang, Rui Sun, Aijuan Zhou, Jiaguang Zhang, Yunbo Luan, Jianna Jia, Xiuping Yue, Jie Zhang
Most studies have employed aeration-biofiltration process for the simultaneous removal of iron, manganese and ammonia in groundwater. However, what's inside the "black box", i.e., the potential contribution of functional microorganisms behavior and interactions have seldom been investigated. Moreover, little attention has been paid to the correlations between environmental variables and functional microorganisms. In this study, the performance of industrial-scale biofilters for the contaminated groundwater treatment was studied...
January 8, 2018: AMB Express
https://www.readbyqxmd.com/read/29311425/phylogeny-and-putative-virulence-gene-analysis-of-bartonella-bovis
#7
Sun Tee Tay, Kai Ling Kho, Siew Fen Lye, Yun Fong Ngeow
Bartonella bovis is a small Gram-negative bacterium recognized as an etiological agent for bacteremia and endocarditis in cattle. As few reports are available on the taxonomic position of B. bovis and its mechanism of virulence, this study aims to resolve the phylogeny of B. bovis and investigate putative virulence genes based on whole genome sequence analysis. Genome-wide comparisons based on single nucleotide polymorphisms (SNP) and orthologous genes were performed in this study for phylogenetic inference of 27 Bartonella species...
December 29, 2017: Journal of Veterinary Medical Science
https://www.readbyqxmd.com/read/29304460/rethinking-anaerobic-as-iii-oxidation-in-filters-effect-of-indigenous-nitrate-respirers
#8
Jinli Cui, Jingjing Du, Haixia Tian, Tingshan Chan, Chuanyong Jing
Microorganisms play a key role in the redox transformation of arsenic (As) in aquifers. In this study, the impact of indigenous bacteria, especially the prevailing nitrate respirers, on arsenite (As(III)) oxidation was explored during groundwater filtration using granular TiO2 and subsequent spent TiO2 anaerobic landfill. X-ray absorption near edge structure spectroscopy analysis showed As(III) oxidation (46% in 10 days) in the presence of nitrate in the simulated anaerobic landfills. Meanwhile, iron (Fe) species on the spent TiO2 were dominated by amorphous ferric arsenate, ferrihydrite and goethite...
December 27, 2017: Chemosphere
https://www.readbyqxmd.com/read/29302910/experiment-on-the-treatment-of-acid-mine-drainage-with-optimized-biomedical-stone-particles-by-response-surface-methodology
#9
Junzhen Di, Mingxin Wang, Zhitao Zhu
The immobilized particles were used to treat acid mine drainage (AMD) in the study, which owns the characteristics of serious pollution and high managing cost. The immobilized particles were prepared with sulfate reducing bacteria (SRB) and medical stones. In order to investigate the interactive influence of medical stones on the particle properties, the salt modification condition, content, and size of the medical stone were taken as the influential factors. At the same time, the removal rate of SO42- and Mn2+, the release of total irons (TFe) and chemical oxygen demand (COD) and pH value were taken as the response values in the experiment...
January 4, 2018: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/29298384/iron-robustly-stimulates-simultaneous-nitrification-and-denitrification-under-aerobic-conditions
#10
Hong Chen, Xuhao Zhao, Yuying Cheng, Mingji Jiang, Xiang Li, Gang Xue
Simultaneous nitrification and denitrification (SND) is a promising single-reactor biological nitrogen-removal method. Activated sludge with and without iron scrap supplementation (Sludge-Fe and Sludge-C, respectively) was acclimated under aerobic condition. The total nitrogen (TN) content of Sludge-Fe substantially decreased from 25.0±1.0 to 11.2±0.4 mg/L, but Sludge-C did not show the TN-removal capacity. Further investigations excluded a chemical reduction of NO3--N by iron and a decrease of NH4+-N by microbial assimilation, and the contribution of SND was verified...
January 3, 2018: Environmental Science & Technology
https://www.readbyqxmd.com/read/29286400/experimental-column-setup-for-studying-anaerobic-biogeochemical-interactions-between-iron-oxy-hydroxides-trace-elements-and-bacteria
#11
Jennifer Hellal, André Burnol, Aude Locatelli, Fabienne Battaglia-Brunet
Fate and speciation of trace elements (TEs), such as arsenic (As) and mercury (Hg), in aquifers are closely related to physio-chemical conditions, such as redox potential (Eh) and pH, but also to microbial activities that can play a direct or indirect role on speciation and/or mobility. Indeed, some bacteria can directly oxidize As(III) to As(V) or reduce As(V) to As(III). Likewise, bacteria are strongly involved in Hg cycling, either through its methylation, forming the neurotoxin monomethyl mercury, or through its reduction to elemental Hg°...
December 19, 2017: Journal of Visualized Experiments: JoVE
https://www.readbyqxmd.com/read/29283032/integrated-bio-oxidation-and-adsorptive-filtration-reactor-for-removal-of-arsenic-from-wastewater
#12
Kalyani Kamde, Rashmi Dahake, R A Pandey, Amit Bansiwal
Recently, removal of arsenic from different industrial effluent discharged using simple, efficient and low-cost technique has been widely considered. In this study, removal of arsenic (As) from real wastewater has been studied employing modified bio-oxidation followed by adsorptive filtration method in a novel continuous flow through the reactor. This method includes biological oxidation of ferrous to ferric ions by immobilized Acidothiobacillus ferrooxidans bacteria on granulated activated carbon (GAC) in fixed bed bio-column reactor with the adsorptive filtration unit...
December 28, 2017: Environmental Technology
https://www.readbyqxmd.com/read/29282292/the-radical-sam-protein-hemw-is-a-heme-chaperone
#13
Vera Haskamp, Simone Karrie, Toni Mingers, Stefan Barthels, François Alberge, Axel Magalon, Katrin Müller, Eckard Bill, Wolfgang Lubitz, Kirstin Kleeberg, Peter Schweyen, Martin Bröring, Martina Jahn, Dieter Jahn
Radical S-adenosylmethionine (SAM) enzymes exist in organisms from all kingdoms of life, and all of these proteins generate an adenosyl radical via the homolytic cleavage of the S-C(5') bond of SAM. Of particular interest are radical SAM enzymes, such as heme chaperones, that insert heme into respiratory enzymes. For example, heme chaperones insert heme into target proteins, but have been studied only for the formation of cytochrome c type hemoproteins. Here, we report that a radical SAM protein, the heme chaperone HemW from bacteria, is required for the insertion of heme b into respiratory chain enzymes...
December 27, 2017: Journal of Biological Chemistry
https://www.readbyqxmd.com/read/29280002/iron-sulfur-clusters-biogenesis-by-the-suf-machinery-close-to-the-molecular-mechanism-understanding
#14
REVIEW
J Pérard, Sandrine Ollagnier de Choudens
Iron-sulfur clusters (Fe-S) are amongst the most ancient and versatile inorganic cofactors in nature which are used by proteins for fundamental biological processes. Multiprotein machineries (NIF, ISC, SUF) exist for Fe-S cluster biogenesis which are mainly conserved from bacteria to human. SUF system (sufABCDSE operon) plays a general role in many bacteria under conditions of iron limitation or oxidative stress. In this mini-review, we will summarize the current understanding of the molecular mechanism of Fe-S biogenesis by SUF...
December 26, 2017: Journal of Biological Inorganic Chemistry: JBIC
https://www.readbyqxmd.com/read/29275285/a-3dber-s-ec-process-for-simultaneous-nitrogen-and-phosphorus-removal-from-wastewater-with-low-organic-carbon-content
#15
Ruixia Hao, Yanqing Zhou, Jianbing Li, Jianchao Wang
A new process was proposed by integrating a three-dimensional biofilm electrode reactor with sulfur autotrophic denitrification and electrocoagulation within the same reactor. The results indicated that under the wastewater influent condition of NO3--N = 30 mg/L, COD = 45 mg/L, total phosphorus (TP) = 1.5 mg/L, hydraulic retention time (HRT) = 8 h, and I = 400 mA, the NO3--N and TP removal of the proposed process reached 89.8% and 83.0%, respectively. It was observed that the electrocoagulation process improved phosphorus removal, while the simultaneous existence of heterotrophic, hydrogen, sulfur and iron autotrophic denitrifying bacteria led to enhanced and stabilized nitrogen removal...
December 21, 2017: Journal of Environmental Management
https://www.readbyqxmd.com/read/29259599/epidemiology-of-danish-aeromonas-salmonicida-subsp-salmonicida-in-fish-farms-using-whole-genome-sequencing
#16
Simona Bartkova, Pimlapas Leekitcharoenphon, Frank M Aarestrup, Inger Dalsgaard
Furunculosis, a serious infection caused by the bacterium Aeromonas salmonicida subsp. salmonicida is common in sea-reared rainbow trout production in Denmark. Developing an effective control strategy requires knowledge of the epidemiology, as well as the genomic and virulent variability of the Danish A. salmonicida subsp. salmonicida isolates. To obtain this, the genomes of 101 A. salmonicida subsp. salmonicida, including 99 Danish isolates, one Scottish strain and the type strain NCIMB 1102, were sequenced using the Illumina HiSeq platform...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/29249024/investigations-of-microbial-degradation-of-polycyclic-aromatic-hydrocarbons-based-on-13c-labeled-phenanthrene-in-a-soil-co-contaminated-with-trace-elements-using-a-plant-assisted-approach
#17
Anna Wawra, Wolfgang Friesl-Hanl, Anna Jäger, Markus Puschenreiter, Gerhard Soja, Thomas Reichenauer, Andrea Watzinger
Co-contaminations of soils with organic and inorganic pollutants are a frequent environmental problem. Due to their toxicity and recalcitrance, the heterogeneous pollutants may persist in soil. The hypothesis of this study was that degradation of polycyclic aromatic hydrocarbons (PAHs) is enhanced if heavy metals in soil are immobilized and their bioavailability reduced. For metal immobilization and enhanced biodegradation, distinct mineral and organic soil amendments (iron oxides, gravel sludge, biochar) were deployed in an incubation batch experiment...
December 16, 2017: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/29245150/mobilization-of-arsenic-on-nano-tio2-in-soil-columns-with-sulfate-reducing-bacteria
#18
Ting Luo, Li Ye, Tingshan Chan, Chuanyong Jing
Arsenic (As) remediation in contaminated water using nanoparticles is promising. However, the fate and transport of As associated with nano-adsorbents in natural environment is poorly understood. To investigate the fate of adsorbed As on nano-TiO2 in changed redox condition from oxic to anoxic, we added the As(V)-TiO2 suspension in groundwater to an autoclaved soil column which inoculated a sulfate-reducing bacterium, Desulfovibrio vulgaris DP4. The dissolved As(V) in effluent increased to 798 μg/L for the biotic column and to 1510 μg/L for the abiotic control, and dissolved As(III) was observed only in biotic column...
December 12, 2017: Environmental Pollution
https://www.readbyqxmd.com/read/29243409/thermophilic-bacterial-communities-inhabiting-the-microbial-mats-of-indifferent-and-chalybeate-iron-rich-thermal-springs-diversity-and-biotechnological-analysis
#19
Ramganesh Selvarajan, Timothy Sibanda, Memory Tekere
Microbial mats are occasionally reported in thermal springs and information on such mats is very scarce. In this study, microbial mats were collected from two hot springs (Brandvlei (BV) and Calitzdorp (CA)), South Africa and subjected to scanning electron microscopy (SEM) and targeted 16S rRNA gene amplicon analysis using Next Generation Sequencing (NGS). Spring water temperature was 55°C for Brandvlei and 58°C for Calitzdorp while the pH of both springs was slightly acidic, with an almost identical pH range (6...
December 15, 2017: MicrobiologyOpen
https://www.readbyqxmd.com/read/29229530/trichoderma-harzianum-mtcc-5179-impacts-the-population-and-functional-dynamics-of-microbial-community-in-the-rhizosphere-of-black-pepper-piper-nigrum-l
#20
Palaniyandi Umadevi, Muthuswamy Anandaraj, Vivek Srivastav, Sailas Benjamin
Employing Illumina Hiseq whole genome metagenome sequencing approach, we studied the impact of Trichoderma harzianum on altering the microbial community and its functional dynamics in the rhizhosphere soil of black pepper (Piper nigrum L.). The metagenomic datasets from the rhizosphere with (treatment) and without (control) T. harzianum inoculation were annotated using dual approach, i.e., stand alone and MG-RAST. The probiotic application of T. harzianum in the rhizhosphere soil of black pepper impacted the population dynamics of rhizosphere bacteria, archae, eukaryote as reflected through the selective recruitment of bacteria [Acidobacteriaceae bacterium (p=1...
November 29, 2017: Brazilian Journal of Microbiology: [publication of the Brazilian Society for Microbiology]
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