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https://www.readbyqxmd.com/read/28330311/scaling-up-a-virginiamycin-production-by-a-high-yield-streptomyces-virginiae-vkm-ac-2738d-strain-using-adsorbing-resin-addition-and-fed-batch-fermentation-under-controlled-conditions
#1
Vakhtang Dzhavakhiya, Vyacheslav Savushkin, Alexander Ovchinnikov, Vladislav Glagolev, Veronika Savelyeva, Evgeniya Popova, Nikita Novak, Elena Glagoleva
Virginiamycin produced by Streptomyces virginiae as a natural mix of macrocyclic peptidolactones M and S is widely used in the industrial production of ethanol fuel and as an antibiotic feed additive for cattle and poultry. Its main antimicrobial components, M1 and S1 factors, act synergistically if the M1:S1 ratio in the final product is 70-75:25-30. This fact significantly complicates the development of stable high-yield strains suitable for industrial application. In the previous work, authors obtained a mutant S...
December 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330197/xylitol-production-by-saccharomyces-cerevisiae-overexpressing-different-xylose-reductases-using-non-detoxified-hemicellulosic-hydrolysate-of-corncob
#2
Anushree Kogje, Anand Ghosalkar
Xylitol production was compared in fed batch fermentation by Saccharomyces cerevisiae strains overexpressing xylose reductase (XR) genes from Candida tropicalis, Pichia stipitis, Neurospora crassa, and an endogenous gene GRE3. The gene encoding a xylose specific transporter (SUT1) from P. stipitis was cloned to improve xylose transport and fed batch fermentation was used with glucose as a cosubstrate to regenerate NADPH. Xylitol yield was near theoretical for all the strains in fed batch fermentation. The highest volumetric (0...
December 2016: 3 Biotech
https://www.readbyqxmd.com/read/28322433/a-9-pool-metabolic-structured-kinetic-model-describing-days-to-seconds-dynamics-of-growth-and-product-formation-by-penicillium-chrysogenum
#3
Wenjun Tang, Amit T Deshmukh, Cees Haringa, Guan Wang, Walter van Gulik, Wouter van Winden, Matthias Reuss, Joseph J Heijnen, Jianye Xia, Ju Chu, Henk J Noorman
A powerful approach for the optimization of industrial bioprocesses is to perform detailed simulations integrating large scale computational fluid dynamics (CFD) and cellular reaction dynamics (CRD). However, complex metabolic kinetic models containing a large number of equations pose formidable challenges in CFD-CRD coupling and computation time afterward. This necessitates to formulate a relatively simple but yet representative model structure. Such a kinetic model should be able to reproduce metabolic responses for short-term (mixing time scale of tens of seconds) and long-term (fed-batch cultivation of hours/days) dynamics in industrial bioprocesses...
March 21, 2017: Biotechnology and Bioengineering
https://www.readbyqxmd.com/read/28315963/enhancement-of-2-3-butanediol-production-from-jerusalem-artichoke-tuber-extract-by-a-recombinant-bacillus-sp-strain-brc1-with-increased-inulinase-activity
#4
Jang Min Park, Baek-Rock Oh, In Yeong Kang, Sun-Yeon Heo, Jeong-Woo Seo, Seung-Moon Park, Won-Kyung Hong, Chul Ho Kim
A Bacillus sp. strain named BRC1 is capable of producing 2,3-butanediol (2,3-BD) using hydrolysates of the Jerusalem artichoke tuber (JAT), a rich source of the fructose polymer inulin. To enhance 2,3-BD production, we undertook an extensive analysis of the Bacillus sp. BRC1 genome, identifying a putative gene (sacC) encoding a fructan hydrolysis enzyme and characterizing the activity of the resulting recombinant protein expressed in and purified from Escherichia coli. Introduction of the sacC gene into Bacillus sp...
March 18, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28315821/1-3-propanediol-production-by-a-newly-isolated-strain-clostridium-perfringens-gyl
#5
Yali Guo, Lu Dai, Bo Xin, Fei Tao, Hongzhi Tang, Yaling Shen, Ping Xu
1,3-Propanediol (1,3-PD), a valuable bulk industrial material, has attracted increasing interest in recent years. A novel strain GYL isolated from soil samples could efficiently convert glycerol to 1,3-PD anaerobically. The physiological and biochemical characteristics of strain GYL were determined, indicating that strain GYL is a member of Clostridium perfringens with the neighbor-joining method of 16S rRNA gene sequences. The fermentation properties of strain GYL were also investigated systematically, which showed that the strain has a fast growth speed and high tolerance to 200g/L glycerol...
February 28, 2017: Bioresource Technology
https://www.readbyqxmd.com/read/28303649/transforming-sugars-into-fat-lipid-biosynthesis-using-different-sugars-in-yarrowia-lipolytica
#6
Piotr Hapeta, Magdalena Rakicka, Remi Dulermo, Heber Gamboa-Meléndez, Anne-Marie Crutz-Le Coq, Jean-Marc Nicaud, Zbigniew Lazar
In an era of ever-increasing energy demands, a promising technology is being developed: the use of oleaginous microorganisms such as Yarrowia lipolytica to convert waste materials into biofuels. Here, we constructed two Y. lipolytica strains that displayed both increased lipid accumulation and a more efficient use of biomass-derived sugars, including glucose, fructose, galactose, and inulin. The first strain, Y. lipolytica YLZ150, was derived from the French wild-type strain W29. It had inhibited triacylglycerol mobilization (∆tgl4) and β-oxidation (∆pox1-6), and it overexpressed GPD1, DGA2, HXK1, the native Leloir pathway, SUC2 from Saccharomyces cerevisiae, and INU1 from Kluyveromyces marxianus...
March 17, 2017: Yeast
https://www.readbyqxmd.com/read/28303352/redirecting-carbon-flux-through-pgi-deficient-and-heterologous-transhydrogenase-toward-efficient-succinate-production-in-corynebacterium-glutamicum
#7
Chen Wang, Zhihui Zhou, Heng Cai, Zhongjun Chen, Hongtao Xu
Corynebacterium glutamicum is particularly known for its potentiality in succinate production. We engineered C. glutamicum for the production of succinate. To enhance C3-C4 carboxylation efficiency, chromosomal integration of the pyruvate carboxylase gene pyc resulted in strain NC-4. To increase intracellular NADH pools, the pntAB gene from Escherichia coli, encoding for transhydrogenase, was chromosomally integrated into NC-4, leading to strain NC-5. Furthermore, we deleted pgi gene in strain NC-5 to redirect carbon flux to the pentose phosphate pathway (PPP)...
March 16, 2017: Journal of Industrial Microbiology & Biotechnology
https://www.readbyqxmd.com/read/28302114/implications-of-evolutionary-engineering-for-growth-and-recombinant-protein-production-in-methanol-based-growth-media-in-the-yeast-pichia-pastoris
#8
Josef W Moser, Roland Prielhofer, Samuel M Gerner, Alexandra B Graf, Iain B H Wilson, Diethard Mattanovich, Martin Dragosits
BACKGROUND: Pichia pastoris is a widely used eukaryotic expression host for recombinant protein production. Adaptive laboratory evolution (ALE) has been applied in a wide range of studies in order to improve strains for biotechnological purposes. In this context, the impact of long-term carbon source adaptation in P. pastoris has not been addressed so far. Thus, we performed a pilot experiment in order to analyze the applicability and potential benefits of ALE towards improved growth and recombinant protein production in P...
March 17, 2017: Microbial Cell Factories
https://www.readbyqxmd.com/read/28298692/enrichment-of-maize-and-triticale-bran-with-recombinant-aspergillus-tubingensis-ferulic-acid-esterase
#9
Eunice N Zwane, Petrus J van Zyl, Kwaku G Duodu, Shaunita H Rose, Karl Rumbold, Willem H van Zyl, Marinda Viljoen-Bloom
Ferulic acid is a natural antioxidant found in various plants and serves as a precursor for various fine chemicals, including the flavouring agent vanillin. However, expensive extraction methods have limited the commercial application of ferulic acid, in particular for the enrichment of food substrates. A recombinant Aspergillus tubingensis ferulic acid esterase Type A (FAEA) was expressed in Aspergillus niger D15#26 and purified with anion-exchange chromatography (3487 U/mg, Km  = 0.43 mM, Kcat = 0.48/min on methyl ferulate)...
March 2017: Journal of Food Science and Technology
https://www.readbyqxmd.com/read/28296355/biosensor-enabled-directed-evolution-to-improve-muconic-acid-production-in-saccharomyces-cerevisiae
#10
John M Leavitt, James M Wagner, Cuong Chi Tu, Alice Tong, Yanyi Liu, Hal S Alper
Muconic acid is a valuable platform chemical with potential applications in the production of polymers such as nylon and polyethylene terephthalate (PET). The conjugate base, muconate, was previously biosynthesized in the bacterial host Escherichia coli. Significant pathway engineering led to the first reported instance of rationally engineered production of muconic acid in the yeast Saccharomyces cerevisiae. To further increase muconic acid production in this host, we employed an adaptive laboratory evolution (ALE) strategy to complement rational metabolic engineering...
March 10, 2017: Biotechnology Journal
https://www.readbyqxmd.com/read/28288360/biosurfactant-assisted-recovery-of-the-c5-c11-hydrocarbon-fraction-from-oily-sludge-using-biosurfactant-producing-consortium-culture-of-bacteria
#11
Evans M Nkhalambayausi Chirwa, Chidinyane T Mampholo, Oluwademilade M Fayemiwo, Fisseha A Bezza
A biosurfactant producing culture of bacteria was isolated from an automobile engine oil dump site which was later used as an inoculum in batch and continuous flow oil recovery from oily sludge. Initially, an emulsion of oily sludge was prepared by mixing 5% m/v solids: 21% v/v bituminous sludge: 77% v/v water. The isolated cultures were added to vessels with stable emulsions to facilitate the separation of oil droplets from the sludge matrix. In batches with live cultures, up to 35% oil recovery was achieved after incubation for 10 days...
March 10, 2017: Journal of Environmental Management
https://www.readbyqxmd.com/read/28285227/fermentation-and-crystallization-of-succinic-acid-from-actinobacillus-succinogenes-atcc55618-using-fresh-cassava-root-as-the-main-substrate
#12
Nguyen Thi Huong Thuy, Artit Kongkaew, Adrian Flood, Apichat Boontawan
The fermentation of succinic acid from fresh cassava root using Actinobacillus succinogenes ATCC55618, and the recovery of the product using crystallization were investigated. Fresh cassava root is an ideal succinic acid feedstock due to its low price and high starch content. Saccharification was carried out using commercially available enzymes and diammonium phosphate was used as an inexpensive nitrogen source. Different fermentation modes were compared in terms of product yield and productivity. Results for fed-batch fermentations showed that a succinic acid titer of 151...
February 28, 2017: Bioresource Technology
https://www.readbyqxmd.com/read/28285225/staged-cultivation-enhances-biomass-accumulation-in-the-green-growth-phase-of-haematococcus-pluvialis
#13
Han Sun, Bin Liu, Xue Lu, Ka-Wing Cheng, Feng Chen
An innovative staged cultivation (SC) method was proposed to overcome the limiting factors associated with the growth of Haematococcus pluvialis in the green growth phase. This strategy led to a 1.16-fold increase in biomass concentration. Light wavelength, nutrient concentration and extracellular metabolite were identified to be key limiting factors when cells of H. pluvialis were in the low, medium, and high cell density sub-phase, respectively. A mix of red and white light (2:1) was demonstrated for the first time to accelerate cell growth in the low cell density sub-phase...
March 4, 2017: Bioresource Technology
https://www.readbyqxmd.com/read/28281882/efficient-expression-of-stable-recombinant-human-insulin-like-growth-factor-1-fusion-with-human-serum-albumin-in-chinese-hamster-ovary-cells
#14
Aini Wan, Dongsheng Xu, Kedong Liu, Lin Peng, Yanfei Cai, Yun Chen, Yang He, Jianfeng Yang, Jian Jin, Huazhong Li
Insulin-like growth factor-1 (IGF-1) plays a crucial role in cell development, differentiation and metabolism and has been a potential therapeutic agent for many diseases. Chinese hamster ovary (CHO) cells are widely used for production of recombinant therapeutic proteins, but the expression level of IGF-1 in CHO cells is very low (1500 µg/L) and the half-life of IGF-1 in blood circulation is only 4.5 min according to previously studies. Therefore, IGF-1 was fused to long-circulating serum protein HSA and expressed in CHO cells...
March 10, 2017: Preparative Biochemistry & Biotechnology
https://www.readbyqxmd.com/read/28281868/binding-and-biologic-characterization-of-recombinant-human-serum-albumin-etgfbr2-fusion-protein-expressed-in-cho-cells
#15
Aini Wan, Yana Miao, Lin Peng, Yanfei Cai, Yun Chen, Yang He, Jianfeng Yang, Jian Jin, Huazhong Li
Transforming growth factor-β1 (TGF-β1) signaling is involved in cell metabolism, growth, differentiation, carcinoma invasion and fibrosis development, which suggests TGF-β1 can be treated as a therapeutic target extensively. Because TGF-β1 receptor type α(TGFBR2) is the directed and essential mediator for TGF-β1 signals, the extracellular domain of TGFBR2 (eTGFBR2), binding partner for TGF-β1, has been produced in a series of expression systems to inhibit TGF-β1 signaling. However, eTGFBR2 is unstable with a short half-life predominantly because of enzymatic degradation and kidney clearance...
February 17, 2017: Bioengineered
https://www.readbyqxmd.com/read/28281648/proteomic-analysis-of-host-cell-protein-dynamics-in-the-culture-supernatants-of-antibody-producing-cho-cells
#16
Jin Hyoung Park, Jong Hwa Jin, Myung Sin Lim, Hyun Joo An, Jong Won Kim, Gyun Min Lee
Chinese hamster ovary (CHO) cells are the most common cell line used for the production of therapeutic proteins including monoclonal antibodies (mAbs). Host cell proteins (HCPs), secreted and released from lysed cells, accumulate extracellularly during the cultures of recombinant CHO (rCHO) cells, potentially impairing product quality. In an effort to maintain good mAb quality during the cultures, HCPs accumulated extracellularly in batch and fed-batch cultures of a mAb-producing rCHO cell line were identified and quantified by nanoflow liquid chromatography-tandem mass spectrometry, followed by their gene ontology and functional analysis...
March 10, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28281229/potential-of-pichia-pastoris-for-the-production-of-industrial-penicillin-g-acylase
#17
Helena Marešová, Andrea Palyzová, Martina Plačková, Michal Grulich, Vyasa Williams Rajasekar, Václav Štěpánek, Eva Kyslíková, Pavel Kyslík
This study deals with the potential of Pichia pastoris X-33 for the production of penicillin G acylase (PGA(A)) from Achromobacter sp. CCM 4824. Synthetic gene matching the codon usage of P. pastoris was designed for intracellular and secretion-based production strategies and cloned into vectors pPICZ and pPICZα under the control of AOX1 promoter. The simple method was developed to screen Pichia transformants with the intracellularly produced enzyme. The positive correlation between acylase production and pga gene dosage for both expression systems was demonstrated in small scale experiments...
March 9, 2017: Folia Microbiologica
https://www.readbyqxmd.com/read/28273571/detoxification-of-1-1-2-trichloroethane-to-ethene-in-a-bioreactor-co-culture-of-dehalogenimonas-and-dehalococcoides-mccartyi-strains
#18
Siti Hatijah Mortan, Lucía Martín-González, Teresa Vicent, Gloria Caminal, Ivonne Nijenhuis, Lorenz Adrian, Ernest Marco-Urrea
1,1,2-Trichloroethane (1,1,2-TCA) is a non-flammable organic solvent and common environmental contaminant in groundwater. Organohalide-respiring bacteria are key microorganisms to remediate 1,1,2-TCA because they can gain metabolic energy during its dechlorination under anaerobic conditions. However, all current isolates produce hazardous end products such as vinyl chloride, monochloroethane or 1,2-dichloroethane that accumulate in the medium. Here, we constructed a syntrophic co-culture of Dehalogenimonas and Dehalococcoides mccartyi strains to achieve complete detoxification of 1,1,2-TCA to ethene...
February 27, 2017: Journal of Hazardous Materials
https://www.readbyqxmd.com/read/28268250/antioxidant-effect-of-thiazolidine-molecules-in-cell-culture-media-improves-stability-and-performance
#19
Jennifer Kuschelewski, Alisa Schnellbaecher, Sascha Pering, Maria Wehsling, Aline Zimmer
The ability of cell culture media components to generate reactive species as well as their sensitivity to oxidative degradation, affects the overall stability of media and the behavior of cells cultured in vitro. This study investigates the influence of thiazolidine molecules, formed from the condensation between cysteine and alpha-ketoacids, on the stability of these complex mixtures and on the performance of cell culture processes aiming to produce therapeutically relevant monoclonal antibodies. Results presented in this study indicate that 2-methyl-1,3-thiazolidine-2,4-dicarboxylic acid and 2-(2-carboxyethyl)-1,3-thiazolidine-2,4-dicarboxylic acid, obtained by condensation of cysteine with pyruvate or alpha-ketoglutarate respectively, are able to stabilize cell culture media formulations, in particular redox sensitive molecules like folic acid, thiamine, L-methionine (met) and L-tryptophan (trp)...
March 7, 2017: Biotechnology Progress
https://www.readbyqxmd.com/read/28262952/mirna-engineering-of-cho-cells-facilitates-production-of-difficult-to-express-proteins-and-increases-success-in-cell-line-development
#20
Simon Fischer, Kim F Marquart, Lisa A Pieper, Juergen Fieder, Martin Gamer, Ingo Gorr, Patrick Schulz, Harald Bradl
In recent years, coherent with growing biologics portfolios also the number of complex and thus difficult-to-express (DTE) therapeutic proteins has increased considerably. DTE proteins challenge bioprocess development and can include various therapeutic protein formats such as monoclonal antibodies (mAbs), multi-specific affinity scaffolds (e.g. bispecific antibodies), cytokines or fusion proteins. Hence, the availability of robust and versatile Chinese hamster ovary (CHO) host cell factories is fundamental for high-yielding bioprocesses...
March 6, 2017: Biotechnology and Bioengineering
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