keyword
https://read.qxmd.com/read/38627394/an-optoacoustic-field-programmable-perceptron-for-recurrent-neural-networks
#21
JOURNAL ARTICLE
Steven Becker, Dirk Englund, Birgit Stiller
Recurrent neural networks (RNNs) can process contextual information such as time series signals and language. But their tracking of internal states is a limiting factor, motivating research on analog implementations in photonics. While photonic unidirectional feedforward neural networks (NNs) have demonstrated big leaps, bi-directional optical RNNs present a challenge: the need for a short-term memory that (i) programmable and coherently computes optical inputs, (ii) minimizes added noise, and (iii) allows scalability...
April 16, 2024: Nature Communications
https://read.qxmd.com/read/38626735/primary-results-of-patients-with-genitourinary-malignancies-presented-at-a-molecular-tumor-board
#22
JOURNAL ARTICLE
Jakob Michaelis, Ruth Himmelsbach, Patrick Metzger, Silke Lassmann, Melanie Börries, Martin Werner, Cornelius Miething, Rouven Höfflin, Anna L Illert, Justus Duyster, Heiko Becker, August Sigle, Christian Gratzke, Markus Grabbert
PURPOSE: Personalized medicine poses great opportunities and challenges. While therapeutic landscape markedly expands, descriptions about status, clinical implementation and real-world benefits of precision oncology and molecular tumor boards (MTB) remain sparse, particularly in the field of genitourinary (GU) cancer. Hence, this study characterized urological MTB cases to better understand the potential role of MTB in uro-oncology. METHODS: We analyzed patients with complete data sets being reviewed at an MTB from January 2019 to October 2022, focusing on results of molecular analysis and treatment recommendations...
April 16, 2024: Urologia Internationalis
https://read.qxmd.com/read/38626724/enhanced-bovine-genome-annotation-through-integration-of-transcriptomics-and-epi-transcriptomics-datasets-facilitates-genomic-biology
#23
JOURNAL ARTICLE
Hamid Beiki, Brenda M Murdoch, Carissa A Park, Chandlar Kern, Denise Kontechy, Gabrielle Becker, Gonzalo Rincon, Honglin Jiang, Huaijun Zhou, Jacob Thorne, James E Koltes, Jennifer J Michal, Kimberly Davenport, Monique Rijnkels, Pablo J Ross, Rui Hu, Sarah Corum, Stephanie McKay, Timothy P L Smith, Wansheng Liu, Wenzhi Ma, Xiaohui Zhang, Xiaoqing Xu, Xuelei Han, Zhihua Jiang, Zhi-Liang Hu, James M Reecy
BACKGROUND: The accurate identification of the functional elements in the bovine genome is a fundamental requirement for high-quality analysis of data informing both genome biology and genomic selection. Functional annotation of the bovine genome was performed to identify a more complete catalog of transcript isoforms across bovine tissues. RESULTS: A total of 160,820 unique transcripts (50% protein coding) representing 34,882 unique genes (60% protein coding) were identified across tissues...
January 2, 2024: GigaScience
https://read.qxmd.com/read/38625536/unravelling-ionic-liquid-solvent-effects-for-a-non-polar-cope-rearrangement-reaction
#24
JOURNAL ARTICLE
Gavin J Smith, Spyridon Koutsoukos, Ben Lancaster, Julian Becker, Tom Welton, Patricia A Hunt
The impact of ionic liquids (ILs) on polar reactions is well recognised, however the impact of ILs on non-polar reactions is less well understood or explored. Pericyclic Cope rearrangements are highly concerted, exhibit minimal charge localisation and pass through an uncharged but well-defined transition state, and thus provide a good mechanism for exploring the impact of IL polarizability on chemical reactivity. Recently, a 10× rate enhancement has been observed for the Cope rearrangement of 3-phenyl-1,5-hexadiene in the IL 1-butyl-3-methylimidazolium bis(trifluoromethanesulfonyl)imide [C4 C1 im][NTf2 ] compared to benzene...
April 16, 2024: Physical Chemistry Chemical Physics: PCCP
https://read.qxmd.com/read/38623042/-everywhere-i-call-there-s-nothing-available-understanding-the-alcohol-treatment-landscape-and-needs-among-unstably-housed-people-who-use-alcohol-in-rhode-island
#25
JOURNAL ARTICLE
Alexandra B Collins, Michael Tan, Megan Smith, Sara J Becker
INTRODUCTION: Alcohol is a leading cause of morbidity and mortality in the United States and people who are unstably housed are disproportionately impacted by adverse alcohol-related health outcomes. Addressing the needs of unstably housed people with high-intensity alcohol use (i.e., heavy episodic use or binge drinking), including those whose goal is not abstinence, is critical to reducing harms among this population. This study explores the alcohol-related treatment and support needs among unstably housed people who use alcohol...
April 16, 2024: Drug and Alcohol Review
https://read.qxmd.com/read/38622449/author-correction-breaking-the-performance-ceiling-for-neoantigen-immunogenicity-prediction
#26
Hugh O'Brien, Max Salm, Laura T Morton, Maciej Szukszto, Felix O'Farrell, Charlotte Boulton, Pablo D Becker, Yardena Samuels, Charles Swanton, Marc R Mansour, Sine Reker Hadrup, Sergio A Quezada
No abstract text is available yet for this article.
April 15, 2024: Nature Cancer
https://read.qxmd.com/read/38622277/factor-xi-structure-function-and-therapeutic-inhibition
#27
REVIEW
Ahmed E Ali, Richard C Becker
Arterial and venous thromboembolism is a major medical concern that requires therapeutic anticoagulation in various medical fields to prevent its drastic consequences. Despite significant advances in anticoagulant therapy, thrombosis remains a leading cause of morbidity and mortality worldwide. Traditional anticoagulants like heparin and vitamin K antagonists (VKAs) have shown efficacy in preventing and treating thrombosis but come with an inherent risk of bleeding due to their non-specific inhibition of multiple coagulation factors...
April 16, 2024: Journal of Thrombosis and Thrombolysis
https://read.qxmd.com/read/38621804/support-for-primary-care-prescribing-for-adult-adhd-in-england-national-survey
#28
JOURNAL ARTICLE
Anna Price, Kieran Becker, John Ward, Obioha Ukoumunne, Rebecca Gudka, Anita Salimi, Faraz Mughal, G J Melendez-Torres, Jane Smith, Tamsin Newlove-Delgado
BACKGROUND: Attention deficit hyperactivity disorder (ADHD) is a common neurodevelopmental disorder with effective pharmacological treatments that improve symptoms and reduce complications. NICE guidelines recommend primary care practitioners prescribe medication for adult ADHD under shared care agreements with adult mental health services (AMHS). However, provision remains uneven, with some practitioners reporting a lack of support. AIM: This study aimed to describe supportive elements (prescribing, shared care, AMHS availability) of primary care prescribing for adult ADHD medication in England, to inform service improvement and improve access for this underserved population...
April 15, 2024: British Journal of General Practice
https://read.qxmd.com/read/38621591/creation-and-validation-of-a-nova-scored-picture-set-to-evaluate-ultra-processed-foods
#29
JOURNAL ARTICLE
Zach Hutelin, Monica Ahrens, Mary Elizabeth Baugh, Mary E Oster, Alexandra L Hanlon, Alexandra G DiFeliceantonio
There has been a rapid shift in the modern food environment towards increased processing in foods consumed in the United States (US) and globally. The NOVA system (not an acronym) for classifying food on degree of processing currently has the most empirical support. Consumption of foods in the NOVA 4 category, ultra-processed foods (UPF), is a risk factor for a host of poor health outcomes including heart disease, stroke, and cancer. Despite these poor health outcomes, UPF make up 58% of calories consumed in the US...
April 13, 2024: Appetite
https://read.qxmd.com/read/38621480/listeria-monocytogenes-infections-in-hematopoietic-cell-transplant-recipients-clinical-manifestations-and-risk-factors-a-multinational-retrospective-case-control-study-of-the-infectious-diseases-working-party-idwp-of-the-european-society-for-blood-and-marrow
#30
JOURNAL ARTICLE
Dina Averbuch, Gloria Tridello, Lotus Wendel, Maija Itälä-Remes, Ilana Oren, Michal Karas, Nicole Blijlevens, Yves Beguin, Annoek Broers, Elisabetta Calore, Chiara Cattaneo, Cecilia Isaksson, Christine Robin, Alain Gadisseur, Johan Maertens, Ann De Becker, Catherina Lueck, Elisabetta Metafuni, Herbert Pichler, Marina Popova, Ron Ram, Moshe Yeshurun, Malgorzata Mikulska, Rafael de la Camara, Jan Styczynski
BACKGROUND: Listeriosis is rare after hematopoietic stem cell transplantation (HCT). Little is known about listeriosis in this population. OBJECTIVES: To describe listeriosis following HCT and assess risk factors for listeriosis. STUDY DESIGN: In this retrospective international case control study, we described 41 listeriosis episodes during 2000-2021 in HCT recipients (111 transplant centers; 30 countries) and assessed risk factors for listeriosis by comparing to matched controls...
April 13, 2024: Transplantation and cellular therapy
https://read.qxmd.com/read/38619659/individualized-center-based-analysis-of-urinary-and-sexual-functional-outcome-after-radical-prostatectomy-based-on-the-prostate-cancer-outcome-study-a-post-hoc-pathway-to-patient-outcome-measurement-analysis-for-quality-improvement
#31
JOURNAL ARTICLE
Gregor Duwe, Katharina Boehm, Gerrit Becker, Christian Ruckes, Peter Sparwasser, Maximilian Haack, Robert Dotzauer, Anita Thomas, Rene Mager, Igor Tsaur, Christopher C M Neumann, Günther Feick, Günter Carl, Maximilian Peter Brandt, Axel Haferkamp, Thomas Höfner
PURPOSE: We evaluate differences of patient-reported outcome measurements (PROM) based urinary continence and sexual function 12 months after radical prostatectomy (RPE) based on perioperative, surgical, and patient-specific characteristics in a large European academic urology center. MATERIALS AND METHODS: All men enrolled in the Prostate Cancer Outcome Study (PCO) study who were treated with RPE between 2017 and 2021 completed EPIC-26 information surveys before and 12 months after RPE...
April 15, 2024: World Journal of Urology
https://read.qxmd.com/read/38619278/mutation-patterns-predict-drug-sensitivity-in-acute-myeloid-leukemia
#32
JOURNAL ARTICLE
Guangrong Qin, Jin Dai, Sylvia Chien, Timothy J Martins, Brenda Loera, Quy H Nguyen, Melanie L Oakes, Bahar Tercan, Boris Aguilar, Lauren Hagen, Jeannine McCune, Richard Gelinas, Raymond J Monnat, Ilya Shmulevich, Pamela S Becker
PURPOSE: The inherent genetic heterogeneity of acute myeloid leukemia (AML) has challenged the development of precise and effective therapies. The objective of this study was to elucidate the genomic basis of drug resistance or sensitivity, identify signatures for drug response prediction, and provide resources to the research community. EXPERIMENTAL DESIGN: We performed targeted sequencing, high-throughput drug screening, and single-cell genomic profiling on leukemia cell samples derived from patients with AML...
April 15, 2024: Clinical Cancer Research
https://read.qxmd.com/read/38619260/marginal-bone-loss-in-ball-versus-locator-attachments-in-implantretained-overdentures-systematic-review-and-meta-analysis
#33
JOURNAL ARTICLE
Mohamed R Mahmoud, Noha Rashwan, Tamer Marzouk, Lorraine Porcello, Rachel W Becker, Abdul Basir Barmak, Hans Malmstrom
OBJECTIVES: This systematic review compares the impact of ball and locator attachments on marginal bone loss in implant-retained overdentures in completely edentulous patients. METHOD AND MATERIALS: Following PRISMA guidelines, health science librarians completed literature searches from inception to March 17, 2023 in seven databases. There were 15,686 items exported to EndNote from Embase.com, CINAHL (EBSCO), Cochrane Library, Ovid MEDLINE-ALL, PubMed, Scopus, and Web of Science...
April 15, 2024: Quintessence International
https://read.qxmd.com/read/38618972/organ-specific-responses-to-atezolizumab-plus-bevacizumab-in-advanced-hepatocellular-carcinoma-a-multicentre-retrospective-study
#34
JOURNAL ARTICLE
Jaekyung Cheon, Sanghoon Jung, Jung Sun Kim, Beodeul Kang, Hyeyoung Kim, Landon L Chan, Lars Becker, Vincent E Gaillard, Stephen L Chan, Chan Kim, Hong Jae Chon
BACKGROUND AND AIMS: Anti-programmed death 1 (PD-1) monotherapy triggers various responses by each organ. In advanced hepatocellular carcinoma (HCC), while extrahepatic lesions demonstrate objective response rates (ORR) of 20%-40%, only 10% of intrahepatic lesions respond. Although first-line atezolizumab/bevacizumab has shown survival benefits in advanced HCC, organ-specific responses remain unexplored. Therefore, we aimed to assess organ-specific responses in patients with advanced HCC receiving atezolizumab/bevacizumab...
April 15, 2024: Liver International: Official Journal of the International Association for the Study of the Liver
https://read.qxmd.com/read/38618958/t-antigen-specific-cd8-t-cells-associate-with-pd-1-blockade-response-in-virus-positive-merkel-cell-carcinoma
#35
JOURNAL ARTICLE
Ulla Kring Hansen, Candice D Church, Ana Micaela Carnaz Simões, Marcus Svensson Frej, Amalie Kai Bentzen, Siri A Tvingsholm, Jürgen C Becker, Steven P Fling, Nirasha Ramchurren, Suzanne L Topalian, Paul T Nghiem, Sine Reker Hadrup
Merkel cell carcinoma (MCC) is a highly immunogenic skin cancer primarily induced by Merkel cell polyomavirus, which is driven by the expression of the oncogenic T antigens (T-Ags). Blockade of the programmed cell death protein-1 (PD-1) pathway has shown remarkable response rates, but evidence for therapy-associated T-Ag-specific immune response and therapeutic strategies for the nonresponding fraction are both limited. We tracked T-Ag-reactive CD8+ T cells in peripheral blood of 26 MCC patients under anti-PD1 therapy, using DNA-barcoded pMHC multimers, displaying all peptides from the predicted HLA ligandome of the oncoproteins, covering 33 class I haplotypes...
January 30, 2024: Journal of Clinical Investigation
https://read.qxmd.com/read/38618246/investigating-ischemia-and-reperfusion-induced-organ-damage-in-severe-cardiac-arrest-a-comprehensive-proteomics-perspective
#36
JOURNAL ARTICLE
Ju Yeon Lee, Muhammad Shoaib, Jin-Woong Choi, Rishabh C Choudhary, Tai Yin, Nara Yoon, Kei Hayashida, Seunguk J Baek, Santiago J Miyara, Lance B Becker, Junhwan Kim
Image 1.
March 2024: Journal of Pharmaceutical Analysis
https://read.qxmd.com/read/38617222/a-paired-analysis-of-mercury-among-non-invasive-tissues-to-inform-bat-conservation-monitoring
#37
Molly C Simonis, Kimberlee Whitmore, Kristin E Dyer, Meagan Allira, Bret Demory, Matthew M Chumchal, Daniel J Becker
UNLABELLED: Contaminant exposure can harm wildlife. However, measuring contaminant exposure in wildlife can be challenging due to accessibility of species and/or sampling tissue matrices needed to answer research questions regarding exposure. For example, in bats and other taxa that roost, it may be best to collect pooled feces from colonies for minimal disturbance to species of conservation concern, but fecal contaminant concentrations do not provide contaminant bioaccumulation estimates...
April 1, 2024: bioRxiv
https://read.qxmd.com/read/38616627/examining-cognitive-disengagement-syndrome-in-relation-to-social-problem-solving-in-young-adults
#38
JOURNAL ARTICLE
Melissa C Miller, Steven K Shapiro, Stephen P Becker
OBJECTIVE: Cognitive disengagement syndrome (CDS), previously referred to as sluggish cognitive tempo (SCT), is characterized by symptoms such as excessive daydreaming, mental confusion, and hypoactivity. CDS symptoms are associated with emotional, social, and daily life impairments. The way in which one solves problems in their daily life is associated with experiences of further problems, such that maladaptive problem-solving can lead to further physical and psychological problems. However, there is limited information on how CDS symptoms are associated with problem solving...
April 15, 2024: Journal of Attention Disorders
https://read.qxmd.com/read/38615685/toxic-gain-of-function-mechanisms-in-c9orf72-als-ftd-neurons-drive-autophagy-and-lysosome-dysfunction
#39
JOURNAL ARTICLE
Jimmy Beckers, Philip Van Damme
Hexanucleotide repeat expansions in the C9orf72 gene are the primary genetic cause for both amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD), two related neurodegenerative diseases. Significant advances in the elucidation of the disease mechanisms responsible for C9orf72 ALS-FTD have revealed both a toxic gain-of-function and a loss-of-function mechanism as possible underlying disease cause. As the differential contribution of both gain and loss of function in C9orf72 ALS-FTD pathogenesis remains debated, we investigated disease mechanisms in motor neurons derived from both authentic human patient C9orf72 ALS-FTD iPSCs as well as a C9orf72 knockout iPSC line...
April 14, 2024: Autophagy
https://read.qxmd.com/read/38613695/membrane-potential-dynamics-of-c5a-stimulated-neutrophil-granulocytes
#40
JOURNAL ARTICLE
Stina Becker, Aljoscha Swoboda, Henrik Siemer, Sandra Schimmelpfennig, Sarah Sargin, Victor Shahin, Albrecht Schwab, Karolina Najder
Neutrophil granulocytes play a crucial role in host defense against invading pathogens and in inflammatory diseases. The aim of this study was to elucidate membrane potential dynamics during the initial phase of neutrophil activation and its relation to migration and production of reactive oxygen species (ROS). We performed ROS production measurements of neutrophils from healthy C57BL/6J mice after TNFα-priming and/or C5a stimulation. The actin cytoskeleton was visualized with fluorescence microscopy...
April 13, 2024: Pflügers Archiv: European Journal of Physiology
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