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Soil sampling method

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https://www.readbyqxmd.com/read/28820994/relative-bioavailability-and-bioaccessibility-of-pcbs-in-soils-based-on-a-mouse-model-and-tenax-improved-physiologically-based-extraction-test
#1
Chao Li, Ruirui Zhang, Yunzi Li, Shujun Zhang, Peng Gao, Xinyi Cui, Lena Q Ma
In this study, bioavailability of polychlorinated biphenyls (PCBs) in soil samples aged for various time intervals (7 days, 1 and 5 months) was assessed by in vivo tests using mice. The in vivo bioavailability of PCBs in soil ranged from 45% (PCB180 in soil aging for 5 month) to 119% (PCB52 in soil aging for 1 month), indicating that not all PCBs was available for absorption after ingestion of soil samples. The bioaccessibility was assessed using both physiologically-based extraction test (PBET) and Tenax improved PBET (TI-PBET)...
August 8, 2017: Chemosphere
https://www.readbyqxmd.com/read/28819509/prevalence-and-intensity-of-soil-transmitted-helminths-among-school-children-of-mendera-elementary-school-jimma-southwest-ethiopia
#2
Ephrem Tefera, Tariku Belay, Seleshi Kebede Mekonnen, Ahmed Zeynudin, Tefera Belachew
INTRODUCTION: Soil transmitted helminths are wide spread in developing countries and in Ethiopia the prevalence of STHs varies in different parts of the country. The aim of this study was to determine the prevalence and intensity of soil transmitted helminths among school children of Mendera Elementary School Jimma town, Southwestern Ethiopia. METHODS: A cross-sectional study was conducted between March 29 and April 9, 2010 to determine the prevalence and intensity of soil transmitted helminths among elementary school children...
2017: Pan African Medical Journal
https://www.readbyqxmd.com/read/28817927/identification-of-biosynthetic-gene-clusters-from-metagenomic-libraries-using-pptase-complementation-in-a-streptomyces-host
#3
J Kipchirchir Bitok, Christophe Lemetre, Melinda A Ternei, Sean F Brady
The majority of environmental bacteria are not readily cultured in the lab, leaving the natural products they make inaccessible using culture-dependent discovery methods. Cloning and heterologous expression of DNA extracted from environmental samples (environmental DNA, eDNA) provides a means of circumventing this discovery bottleneck. To facilitate the identification of clones containing biosynthetic gene clusters, we developed a model heterologous expression reporter strain Streptomyces albus::bpsA ΔPPTase...
September 1, 2017: FEMS Microbiology Letters
https://www.readbyqxmd.com/read/28817098/estimation-of-the-vertical-distribution-of-radiocesium-in-soil-on-the-basis-of-the-characteristics-of-gamma-ray-spectra-obtained-via-aerial-radiation-monitoring-using-an-unmanned-helicopter
#4
Kotaro Ochi, Miyuki Sasaki, Mutsushi Ishida, Shoichiro Hamamoto, Taku Nishimura, Yukihisa Sanada
After the Fukushima Daiichi Nuclear Power Plant accident, the vertical distribution of radiocesium in soil has been investigated to better understand the behavior of radiocesium in the environment. The typical method used for measuring the vertical distribution of radiocesium is troublesome because it requires collection and measurement of the activity of soil samples. In this study, we established a method of estimating the vertical distribution of radiocesium by focusing on the characteristics of gamma-ray spectra obtained via aerial radiation monitoring using an unmanned helicopter...
August 17, 2017: International Journal of Environmental Research and Public Health
https://www.readbyqxmd.com/read/28811029/use-of-diffusive-gradient-in-thin-films-for-in-situ-measurements-a-review-on-the-progress-in-chemical-fractionation-speciation-and-bioavailability-of-metals-in-waters
#5
REVIEW
Amauri Antonio Menegário, Lauren N Marques Yabuki, Karen S Luko, Paul N Williams, Daniel M Blackburn
Chemical fractionation, speciation analysis and bioavailability of metals and metalloids in waters have received increased attention in recent years. However, this interest is not matched by progress in improving species integrity during standard 'grab' sample collection, processing and storage. Time-averaged, low disturbance sampling, in situ, of trace element species, in particular, is a more reliable approach for environmental chemical surveillance and methods based on the diffusive gradients in thin films (DGT) technique stand out as one of the most widely used of the passive sampler classes, and hence will be the primary focus of this review...
August 29, 2017: Analytica Chimica Acta
https://www.readbyqxmd.com/read/28808741/stable-isotope-raman-microspectroscopy-for-the-analysis-of-soil-organic-matter
#6
Alexandra C Wiesheu, Ramona Brejcha, Carsten W Mueller, Ingrid Kögel-Knabner, Martin Elsner, Reinhard Niessner, Natalia P Ivleva
We examined the potential of stable-isotope Raman microspectroscopy (SIRM) for the evaluation of differently enriched (13)C-labeled humic acids as model substances for soil organic matter (SOM). The SOM itself can be linked to the soil water holding capacity. Therefore, artificial humic acids (HA) with known isotopic compositions were synthesized and analyzed by means of SIRM. By performing a pregraphitization, a suitable analysis method was developed to cope with the high fluorescence background. Results were verified against isotope ratio mass spectrometry (IRMS)...
August 14, 2017: Analytical and Bioanalytical Chemistry
https://www.readbyqxmd.com/read/28807294/recombinase-polymerase-amplification-rpa-combined-with-lateral-flow-lf-strip-for-detection-of-toxoplasma-gondii-in-the-environment
#7
Y D Wu, M J Xu, Q Q Wang, C X Zhou, M Wang, X Q Zhu, D H Zhou
Toxoplasma gondii infects all warm-blooded vertebrates, resulting in a great threat to human health and significant economic loss to the livestock industry. Ingestion of infectious oocysts of T. gondii from the environment is the major source of transmission. Detection of T. gondii oocysts by existing methods is laborious, time-consuming and expensive. The objective of the present study was to develop a recombinase polymerase amplification (RPA) method combined with a lateral flow (LF) strip for detection of T...
August 30, 2017: Veterinary Parasitology
https://www.readbyqxmd.com/read/28806672/a-novel-approach-for-rapidly-and-cost-effectively-assessing-toxicity-of-toxic-metals-in-acidic-water-using-an-acidophilic-iron-oxidizing-biosensor
#8
Shih-Hung Yang, Kuo-Chih Cheng, Vivian Hsiu-Chuan Liao
Contamination by heavy metals and metalloids is a serious environmental and health concern. Acidic wastewaters are often associated with toxic metals which may enter and spread into agricultural soils. Several biological assays have been developed to detect toxic metals; however, most of them can only detect toxic metals in a neutral pH, not in an acidic environment. In this study, an acidophilic iron-oxidizing bacterium (IOB) Strain Y10 was isolated, characterized, and used to detect toxic metals toxicity in acidic water at pH 2...
August 6, 2017: Chemosphere
https://www.readbyqxmd.com/read/28803428/environmental-hazard-assessment-by-the-ecoscore-system-to-discriminate-pah-polluted-soils
#9
Christine Lors, Jean-François Ponge, Denis Damidot
A bioassay battery-integrated index was applied to different soils sampled from a former coke factory, with the aim to evaluate the discriminating capacity of the Ecoscore system (ES) to assess the environmental hazard of PAH-polluted soils. Two soils from a former coke factory, polluted with polycyclic aromatic hydrocarbons (PAHs), were evaluated for their ecotoxicity to terrestrial and aquatic organisms and their genotoxicity. These soils have been already presented in a previous paper but data have been reanalyzed for the present article in an endeavor to standardize the ES...
August 12, 2017: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/28803381/effect-of-soil-ph-and-organic-matter-on-the-adsorption-and-desorption-of-pentachlorophenol
#10
Shui-Wen Chang Chien, Shou-Hung Chen, Chi-Jui Li
Various properties of soil affect the partition of organic contaminants within, and conversely, the properties of the organic contaminants also directly affect their partition behavior in soil. Therefore, understanding the effects of various properties of soil on the partition of organic contaminants favors subsequent assessment and provides soil remediation methods for policymakers. This study selected pentachlorophenol (PCP), a common hydrophobic ionizable organic compound in contaminated sites worldwide, as the target contaminant...
August 12, 2017: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/28799052/edxrf-as-an-alternative-method-for-multielement-analysis-of-tropical-soils-and-sediments
#11
Zahily Herrero Fernández, José Araújo Dos Santos Júnior, Romilton Dos Santos Amaral, Juan Reinaldo Estevez Alvarez, Edvane Borges da Silva, Elvis Joacir De França, Rômulo Simões Cezar Menezes, Emerson Emiliano Gualberto de Farias, Josineide Marques do Nascimento Santos
The quality assessment of tropical soils and sediments is still under discussion, with efforts being made on the part of governmental agencies to establish reference values. Energy dispersive X-ray fluorescence (EDXRF) is a potential analytical technique for quantifying diverse chemical elements in geological material without chemical treatment, primarily when it is performed at an appropriate metrological level. In this work, analytical curves were obtained by means of the analysis of geological reference materials (RMs), which allowed for the researchers to draw a comparison among the sources of analytical uncertainty...
August 10, 2017: Environmental Monitoring and Assessment
https://www.readbyqxmd.com/read/28798756/aerial-warfare-a-volatile-dialogue-between-the-plant-pathogen-verticillium-longisporum-and-its-antagonist-paenibacillus-polymyxa
#12
Daria Rybakova, Ute Rack-Wetzlinger, Tomislav Cernava, Angelika Schaefer, Maria Schmuck, Gabriele Berg
Verticillium wilt caused by Verticillium spp. results in severe yield losses in a broad range of crops. Verticillium outbreaks are challenging to control, and exacerbated by increases in soil temperatures and drought associated with global warming. Employing natural antagonists as biocontrol agents offers a promising approach to addressing this challenge. Paenibacillus polymyxa Sb3-1 was proven to reduce the growth of Verticillium longisporum during in vitro experiments and was shown to promote the growth of oilseed rape seedlings infested with V...
2017: Frontiers in Plant Science
https://www.readbyqxmd.com/read/28798380/contribution-of-cropland-to-the-spread-of-shiga-toxin-phages-and-the-emergence-of-new-shiga-toxin-producing-strains
#13
Pablo Quirós, Maite Muniesa
A growing interest in healthy eating has lead to an increase in the consumption of vegetables, associated with a rising number of bacterial outbreaks related to fresh produce. This is the case of the outbreak in Germany, caused by a O104:H4 enteroaggregative E. coli strain lysogenic for a Stx phage. Temperate Stx phages released from their hosts occur as free particles in various environments. This study reports the occurrence of Stx phages in vegetables (lettuce, cucumber, and spinach) and cropland soil samples...
August 10, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28797634/ecological-distribution-of-extremely-thermophilic-bacteria-belonging-to-the-genus-calditerricola-using-the-novel-enrichment-mpn-pcr-method
#14
Kathrina Mae Bienes, Minoru Ito, Kota Shiotsuka, Sachi Yamaguchi, Taiki Fujioka, Yukihiro Tashiro, Kenji Sakai
A unique compost called Satsuma soil is produced from sewage sludge by a hyperthermal composting process in Kagoshima City, Japan. The composting process is carried out at a controlled temperature of at least 80°C and the resulting compost might be useful for recycling sustainable agricultural products. The extremely thermophilic bacterial genus Calditerricola was initially isolated from the high-temperature compost. Likewise, the bacteria were previously isolated from material sludge. It is believed that bacteria in this genus might be involved in the hyperthermal composting process...
August 7, 2017: Journal of Bioscience and Bioengineering
https://www.readbyqxmd.com/read/28794995/a-method-for-soil-moisture-probes-calibration-and-validation-of-satellite-estimates
#15
Mauro Holzman, Raúl Rivas, Facundo Carmona, Raquel Niclòs
Optimization of field techniques is crucial to ensure high quality soil moisture data. The aim of the work is to present a sampling method for undisturbed soil and soil water content to calibrated soil moisture probes, in a context of the SMOS (Soil Moisture and Ocean Salinity) mission MIRAS Level 2 soil moisture product validation in Pampean Region of Argentina. The method avoids soil alteration and is recommended to calibrated probes based on soil type under a freely drying process at ambient temperature...
2017: MethodsX
https://www.readbyqxmd.com/read/28794994/laboratory-investigation-of-steam-transmission-in-unsaturated-clayey-soil-under-osmotic-potential
#16
Mehdi Jalili, Mahmoud Nikkhah Shahmirzadi, Mahdi Kaseb Hazrati, Hamed Ahmadi
Liquids coming from different sources like wastewaters, agricultural and industrial activities and leakages of chemical substances often have high concentration of chemical compositions and the osmotic gradient generated around such sources causes a considerable transmission of the Contamination. The steam transmitted by non-polluted soils moves to polluted masses, causing an increase in the volume of pollution zone and movement of pollutants. Therefore, such physical and chemical processes should be taken into account in pollution transmission models...
2017: MethodsX
https://www.readbyqxmd.com/read/28794573/quantitative-assessment-of-pm2-5-sources-and-their-seasonal-variation-in-krakow
#17
Lucyna Samek, Z Stegowski, L Furman, K Styszko, K Szramowiat, J Fiedor
In industry areas of Poland such as Silesia or urban sites like Krakow and some other cities, the levels of pollutants frequently breach air quality standards. Particulate matter (PM) is the most important constituent of atmospheric pollution. Beginning on 1st February 2014 until 31st January 2015, the samples of fine particulate matter PM2.5 (aerodynamic diameter of particles less than or equal to 2.5 μm) were collected at a site in the south-eastern Krakow urban background area. During this period, 194 samples were taken...
2017: Water, Air, and Soil Pollution
https://www.readbyqxmd.com/read/28794453/varying-sensitivity-of-mountainous-streamwater-base-flow-formula-see-text-concentrations-to-n-deposition-in-the-northern-suburbs-of-tokyo
#18
Kazuya Nishina, Mirai Watanabe, Masami K Koshikawa, Takejiro Takamatsu, Yu Morino, Tatsuya Nagashima, Kunika Soma, Seiji Hayashi
Ecosystems of suburban landscapes (i.e., forest, inland water ecosystem) are threatened by high nitrogen (N) loadings derived from urban air pollutants. Forest ecosystems under high chronic N loadings tend to leach more N via streams. In the northern suburbs of Tokyo, N deposition loading on terrestrial ecosystems has increased over the past 30 years. In this region, we investigated nitrate concentrations in 608 independent small forested catchment water samples from northeastern suburbs of Tokyo. The nitrate concentrations varied from 0...
August 9, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28793754/necessity-of-purification-during-bacterial-dna-extraction-with-environmental-soils
#19
Hyun Jeong Lim, Jung-Hyun Choi, Ahjeong Son
Objectives: Complexity and heterogeneity of soil samples have often implied the inclusion of purification steps in conventional DNA extraction for PCR assays. Unfortunately the purification steps are also time and labor intensive. Therefore the necessity of DNA purification was re-visited and investigated for a variety of environmental soil samples that contained various amounts of PCR inhibitors. Methods: Bead beating and centrifugation was used as the baseline (without purification) method for DNA extraction...
August 8, 2017: Environmental Health and Toxicology
https://www.readbyqxmd.com/read/28793024/socioenvironmental-conditions-and-intestinal-parasitic-infections-in-brazilian-urban-slums-a-cross-sectional-study
#20
Caroline Ferraz Ignacio, Milena Enderson Chagas da Silva, Natasha Berendonk Handam, Maria de Fatima Leal Alencar, Adriana Sotero-Martins, Martha Macedo de Lima Barata, Antonio Henrique Almeida de Moraes
Methods: A cross-sectional study covering an agglomeration of urban slums was conducted between 2015 and 2016 using participants observation, a socioeconomic survey, and the spontaneous sedimentation method with three slides per sample to analyze fresh stool specimens ( n =595) searching for intestinal parasites. Results: Endolimax nana ( n =95, 16.0%) and Entamoeba coli ( n =65, 10.9%) were the most frequently identified agents, followed by Giardia intestinalis ( n =24, 4...
August 7, 2017: Revista do Instituto de Medicina Tropical de São Paulo
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