keyword
MENU ▼
Read by QxMD icon Read
search

Soil sampling

keyword
https://www.readbyqxmd.com/read/28330329/diversity-of-bacteria-and-archaea-in-the-rhizosphere-of-bioenergy-crop-jatropha-curcas
#1
Garima Dubey, Bharati Kollah, Vijay Kumar Gour, Arvind Kumar Shukla, Santosh Ranjan Mohanty
Plant-microbial interaction in rhizosphere plays vital role in shaping plant's growth and ecosystem function. Most of the rhizospheric microbial diversity studies are restricted to bacteria. In natural ecosystem, archaea also constitutes a major component of the microbial population. However, their diversity is less known compared to bacteria. Experiments were carried out to examine diversity of bacteria and archaea in the rhizosphere of bioenergy crop Jatropha curcas (J. curcas). Samples were collected from three locations varying widely in the soil physico-chemical properties...
December 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330326/impact-assessment-of-silver-nanoparticles-on-plant-growth-and-soil-bacterial-diversity
#2
Pallavi, C M Mehta, Rashmi Srivastava, Sandeep Arora, A K Sharma
The present study was carried out to investigate the impact of silver nanoparticles (AgNPs) on the growth of three different crop species, wheat (Triticum aestivum, var. UP2338), cowpea (Vigna sinensis, var. Pusa Komal), and Brassica (Brassica juncea, var. Pusa Jai Kisan), along with their impact on the rhizospheric bacterial diversity. Three different concentrations (0, 50 and 75 ppm) of AgNPs were applied through foliar spray. After harvesting, shoot and root parameters were compared, and it was observed that wheat was relatively unaffected by all AgNP treatments...
December 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330298/biodegradation-of-used-engine-oil-by-novel-strains-of-ochrobactrum-anthropi-hm-1-and-citrobacter-freundii-hm-2-isolated-from-oil-contaminated-soil
#3
Haytham M M Ibrahim
Used engine oil (UEO) constitutes a serious environmental problem due to the difficulty of disposal off or reuse. Ten bacterial strains with biodegradation potential were isolated from UEO-contaminated soil sample using enrichment technique. Two strains which exhibited the highest degradation %, 51 ± 1.2 and 48 ± 1.5, respectively, were selected. Based on the morphological, biochemical characteristics and 16S rRNA sequence analysis, they were identified as Ochrobactrum anthropi HM-1 (accession no: KR360745) and Citrobacter freundii HM-2 (accession no: KR360746)...
December 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330292/comparative-assessment-of-methods-for-metagenomic-dna-isolation-from-soils-of-different-crop-growing-fields
#4
Aiman Tanveer, Sangeeta Yadav, Dinesh Yadav
The isolation of good quality metagenomic DNA from diverse soil, in appreciable amount, is a prerequisite for metagenomics. The availability of commercial kits for isolation of genomic DNAs from soil has drastically expedited the application of metagenomics approach for identifying novel sources of industrially important enzymes. The quantitative and qualitative assessment of metagenomic DNA isolated using either the manual method or the kit-based method should be performed prior to its use in downstream applications...
December 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330251/stenotrophomonas-sp-rzs-7-a-novel-phb-degrader-isolated-from-plastic-contaminated-soil-in-shahada-maharashtra-western-india
#5
S J Wani, S S Shaikh, B Tabassum, R Thakur, A Gulati, R Z Sayyed
This paper reports an isolation and identification of novel poly-β-hydroxybutyrate (PHB) degrading bacterium Stenotrophomonas sp. RZS 7 and studies on its extracellular PHB degrading depolymerase enzyme. The bacterium isolated from soil samples of plastic contaminated sites of municipal area in Shahada, Maharashtra, Western India. It was identified as Stenotrophomonas sp. RZS 7 based on polyphasic approach. The bacterium grew well in minimal salt medium (MSM) and produced a zone (4.2 mm) of PHB hydrolysis on MSM containing PHB as the only source of nutrient...
December 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330242/phylogenetical-coherence-of-pseudomonas-in-unexplored-soils-of-himalayan-region
#6
Stuti Sah, Rajni Singh
Pseudomonas, an enormously diverse genus of the γ-Proteobacteria, is an important member of soil microbial communities. In this study, genetic heterogeneity and plant growth promotory property of Pseudomonas was compared within the group Pseudomonas sensu stricto isolated from the lesser explored niches of Himalayan region. A significant difference (P < 0.001 in total Pseudomonas count) was observed among the six types of soil samples collected from oak forest, fine forest, and agricultural soil. The highest numbers of bacteria were isolated from oak forest soil followed by pine forest soil and agricultural soil...
December 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330237/biocatalytic-activity-of-aspergillus-niger-xylanase-in-paper-pulp-biobleaching
#7
A Sridevi, A Sandhya, G Ramanjaneyulu, G Narasimha, P Suvarnalatha Devi
Xylanase is a hemicellulase enzyme that catalyses the hydrolysis of xylan to xylose which is widely used in processing of feed, pulp and paper. It is produced by many microorganisms especially filamentous fungi like Trichoderma and Aspergillus. A potential xylanolytic fungal isolate Aspergillus niger was isolated from forest soils of Tirumala, AP, India, and its crude enzyme was checked for its potential in paper bleaching. Under submerged fermentation, production of xylanase, cellulase, biomass, total protein and sugar released were analysed after 7 days of incubation at room temperature...
December 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330148/influence-of-tebuconazole-and-copper-hydroxide-on-phosphatase-and-urease-activities-in-red-sandy-loam-and-black-clay-soils
#8
B Anuradha, A Rekhapadmini, V Rangaswamy
The efficacy of two selected fungicides i.e., tebuconazole and coppoer hydroxide, was conducted experiments in laboratory and copper hydroxide on the two specific enzymes phosphatase and urease were determined in two different soil samples (red sandy loam and black clay soils) of groundnut (Arachis hypogaea L.) from cultivated fields of Anantapuramu District, Andhra Pradesh. The activities of the selected soil enzymes were determined by incubating the selected fungicides-treated (1.0, 2.5, 5.0, 7.5 and 10.0 kg ha(-1)) and -untreated groundnut soil samples at 10 day intervals...
June 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330132/an-efficient-and-cost-effective-method-for-dna-extraction-from-athalassohaline-soil-using-a-newly-formulated-cell-extraction-buffer
#9
Avinash Narayan, Kunal Jain, Amita R Shah, Datta Madamwar
The present study describes the rapid and efficient indirect lysis method for environmental DNA extraction from athalassohaline soil by newly formulated cell extraction buffer. The available methods are mostly based on direct lysis which leads to DNA shearing and co-extraction of extra cellular DNA that influences the community and functional analysis. Moreover, during extraction of DNA by direct lysis from athalassohaline soil, it was observed that, upon addition of poly ethylene glycol (PEG), isopropanol or absolute ethanol for precipitation of DNA, salt precipitates out and affecting DNA yield significantly...
June 2016: 3 Biotech
https://www.readbyqxmd.com/read/28330107/population-dynamics-of-soil-bacteria-in-some-areas-of-midnapore-coastal-belt-west-bengal-india
#10
Syed Afrin Azmi, Soumendranath Chatterjee
In this present study the population dynamics of the soil bacteria of some coastal villages, namely Padima, Jatimati, Chanpabani, Palsandapur, Bhagibaharampur, Duttapur, Gangadharpur, Gobindabasan, Somaibasan of Digha, West Bengal, India, was determined. In these villages the aerobic heterotrophic, Gram-negative, spore-forming, starch-hydrolyzing, Pseudomonas, nitrate-reducing, denitrifying, asymbiotic N2 fixing, nitrifying, phosphate-solubilizing bacterial populations ranged from 1.22 to 2.67 × 10(6), 0...
June 2016: 3 Biotech
https://www.readbyqxmd.com/read/28327667/genetic-and-functional-diversity-of-ubiquitous-dna-viruses-in-selected-chinese-agricultural-soils
#11
Li-Li Han, Dan-Ting Yu, Li-Mei Zhang, Ju-Pei Shen, Ji-Zheng He
Viral community structures in complex agricultural soils are largely unknown. Electron microscopy and viromic analyses were conducted on six typical Chinese agricultural soil samples. Tailed bacteriophages, spherical and filamentous viral particles were identified by the morphological analysis. Based on the metagenomic analysis, single-stranded DNA viruses represented the largest viral component in most of the soil habitats, while the double-stranded DNA viruses belonging to the Caudovirales order were predominanted in Jiangxi-maize soils...
March 22, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28327631/the-influence-of-environmental-factors-on-communities-of-arbuscular-mycorrhizal-fungi-associated-with-chenopodium-ambrosioides-revealed-by-miseq-sequencing-investigation
#12
Xihui Xu, Chen Chen, Zhou Zhang, Zehua Sun, Yahua Chen, Jiandong Jiang, Zhenguo Shen
Arbuscular mycorrhizal fungi (AMF) affect multiple ecosystem functions and processes, the assemblages of which vary across ecosystems. However, the influences of environmental factors on AMF communities which may shape these communities are still largely unknown. In this study, AMF communities from roots and rhizosphere soils of Chenopodium ambrosioides in different natural soils were investigated. The root habitat showed significantly smaller numbers of OTUs and lower community richness compared to the rhizosphere soil habitat...
March 22, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28326506/influence-of-calcareous-soil-on-cry3bb1-expression-and-efficacy-in-the-field
#13
David S Wangila, Arnubio Valencia J, Haichuan Wang, Blair D Siegfried, Lance J Meinke
Greater than expected injury by western corn rootworm (WCR) (Diabrotica virgifera virgifera LeConte) to Cry3Bb1 expressing maize hybrids (Zea mays L.) has been reported in southwestern Nebraska. Affected areas of some fields are often associated with high pH calcareous soils where maize growth is poor and iron chlorosis is common. As part of a comprehensive study to understand potential causes of unexpected injury, experiments were conducted during 2013 and 2014 to ascertain whether the calcareous soil conditions and associated poor maize growth negatively affect the expression of Cry3Bb1...
March 22, 2017: Transgenic Research
https://www.readbyqxmd.com/read/28324843/variations-in-pu-isotopic-composition-in-soils-from-the-spitsbergen-norway-three-potential-pollution-sources-of-the-arctic-region
#14
E Łokas, R Anczkiewicz, R Kierepko, J W Mietelski
Although the polar regions have not been industrialised, numerous contaminants originating from human activity are detectable in the Arctic environment. This study reports evidence of (240)Pu/(239)Pu atomic ratios in the tundra and initial soils from different parts of west and central Spitsbergen and recognizes possible environmental inputs of non-global fallout Pu. The average atomic ratio of (240)Pu/(239)Pu equal to 0.179 (ranging between 0.129 and 0.201) in tundra soils are comparable to the characteristic ratio for global fallout (0...
March 18, 2017: Chemosphere
https://www.readbyqxmd.com/read/28324837/status-of-pesticides-pollution-in-tanzania-a-review
#15
REVIEW
Raheli Elibariki, Mihayo Musabila Maguta
Various studies have been conducted in Tanzania to assess the magnitude of pesticides pollution associated with pesticides application, storage, disposal as well as knowledge of farmers on pesticides handling. The studies analysed samples from different matrices covering vegetation, biota, water, sediments and soil. The objective of this review was to summarise the results of pesticides residues reported in different components of the environment to give a clear picture of pesticides pollution status in the country for law enforcement as well as for taking precaution measures...
March 9, 2017: Chemosphere
https://www.readbyqxmd.com/read/28324781/genesis-and-properties-of-wetland-soils-by-vis-nir-swir-as-a-technique-for-environmental-monitoring
#16
José Alexandre Melo Demattê, Ingrid Horák-Terra, Raphael Moreira Beirigo, Fabrício da Silva Terra, Karina Patrícia Prazeres Marques, Caio Troula Fongaro, Alexandre Christófaro Silva, Pablo Vidal-Torrado
Wetlands are important ecosystems characterized by redoximorphic environments producing typical soil forming processes and organic carbon accumulation. Assessments and management of these areas are dependent on knowledge about soil characteristics and variability. By reflectance spectroscopy, information about soils can be obtained since their spectral behaviors are directly related to their chemical, physical, and mineralogical properties reflecting the pedogenetic processes and environment conditions. Our aims were: (a) to characterize the main soil classes of wetlands regarding their spectral behaviors in VIS-NIR-SWIR (350-2500 nm) and relate them to pedogenesis and environmental conditions, (b) to determine spectral ranges (bands) with greater expression of the main soil properties, (c) to identify spectral variations and similarities between hydromorphic soils from wetlands and other soils under different moisture conditions, and (d) to propose spectral models to quantify some chemical and physical soil properties used as environmental quality indicators...
March 18, 2017: Journal of Environmental Management
https://www.readbyqxmd.com/read/28324178/complete-genome-sequence-analysis-of-a-novel-staphylococcus-phage-stap1-and-proposal-of-a-new-species-in-the-genus-silviavirus
#17
Amal Senevirathne, Kuntal Ghosh, Eunjung Roh, Kwang-Pyo Kim
Bacteriophage StAP1 was isolated from a soil sample infecting Staphylococcus aureus and S. xylosus. Its genome was found to be 135,502 base pairs (bp) long with 30.00 mol% G+C content and 192 open reading frames. While no tRNA encoding genes were identified, 7 mobile elements were found to interrupt five StAP1 open reading frames. Comparative genomic and proteomic analysis consistently supports the establishment of a new species in the genus Silviavirus.
March 21, 2017: Archives of Virology
https://www.readbyqxmd.com/read/28324174/combining-climatic-and-soil-properties-better-predicts-covers-of-brazilian-biomes
#18
Daniel M Arruda, Elpídio I Fernandes-Filho, Ricardo R C Solar, Carlos E G R Schaefer
Several techniques have been used to model the area covered by biomes or species. However, most models allow little freedom of choice of response variables and are conditioned to the use of climate predictors. This major restriction of the models has generated distributions of low accuracy or inconsistent with the actual cover. Our objective was to characterize the environmental space of the most representative biomes of Brazil and predict their cover, using climate and soil-related predictors. As sample units, we used 500 cells of 100 km(2) for ten biomes, derived from the official vegetation map of Brazil (IBGE 2004)...
April 2017: Die Naturwissenschaften
https://www.readbyqxmd.com/read/28324138/remediation-of-petroleum-contaminated-soil-using-bulrush-straw-powder-biochar-and-nutrients
#19
Yanjie Wang, Fayun Li, Xiangmin Rong, Haixing Song, Jiabo Chen
The aim of this study was to determine the remediation efficiency of petroleum-contaminated soil from an oilfield using different types of remediation treatments under laboratory conditions. Compared with unamended soil as the control treatment (T1), soil samples were amended with bulrush straw powder (T2), with biochar alone (T3) and in combination with nutrients (nitrogen and phosphorus) (T4). The remediation experiment was carried out for 8 weeks. The extent of hydrocarbon degradation was monitored gravimetrically, and the residual oil fractions were analyzed by gas chromatography...
March 21, 2017: Bulletin of Environmental Contamination and Toxicology
https://www.readbyqxmd.com/read/28323394/feeding-preference-as-a-main-determinant-of-microscale-patchiness-among-terrestrial-nematodes
#20
Casper W Quist, Gerrit Gort, Christian Mulder, Ruud H P Wilbers, Aad J Termorshuizen, Jaap Bakker, Johannes Helder
Soil biota are responsible for essential ecosystem services such as carbon storage, nutrient cycling and water retention. However, assessment of the condition of soil biota is hampered by an overwhelming level of diversity. With representatives in all trophic levels of the food web, nematode communities can be used as bio-indicators. Accurate assessment of nematode assemblages requires insight in the distribution of specimens with distinct food preferences. With the availability of taxon-specific quantitative-PCR assays, distribution patterns of multiple nematode groups can be investigated simultaneously...
March 21, 2017: Molecular Ecology Resources
keyword
keyword
57821
1
2
Fetch more papers »
Fetching more papers... Fetching...
Read by QxMD. Sign in or create an account to discover new knowledge that matter to you.
Remove bar
Read by QxMD icon Read
×

Search Tips

Use Boolean operators: AND/OR

diabetic AND foot
diabetes OR diabetic

Exclude a word using the 'minus' sign

Virchow -triad

Use Parentheses

water AND (cup OR glass)

Add an asterisk (*) at end of a word to include word stems

Neuro* will search for Neurology, Neuroscientist, Neurological, and so on

Use quotes to search for an exact phrase

"primary prevention of cancer"
(heart or cardiac or cardio*) AND arrest -"American Heart Association"