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Multielectrode array

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https://www.readbyqxmd.com/read/28273464/unsupervised-spike-sorting-for-large-scale-high-density-multielectrode-arrays
#1
Gerrit Hilgen, Martino Sorbaro, Sahar Pirmoradian, Jens-Oliver Muthmann, Ibolya Edit Kepiro, Simona Ullo, Cesar Juarez Ramirez, Albert Puente Encinas, Alessandro Maccione, Luca Berdondini, Vittorio Murino, Diego Sona, Francesca Cella Zanacchi, Evelyne Sernagor, Matthias Helge Hennig
We present a method for automated spike sorting for recordings with high-density, large-scale multielectrode arrays. Exploiting the dense sampling of single neurons by multiple electrodes, an efficient, low-dimensional representation of detected spikes consisting of estimated spatial spike locations and dominant spike shape features is exploited for fast and reliable clustering into single units. Millions of events can be sorted in minutes, and the method is parallelized and scales better than quadratically with the number of detected spikes...
March 7, 2017: Cell Reports
https://www.readbyqxmd.com/read/28272020/a-stationary-wavelet-transform-and-a-time-frequency-based-spike-detection-algorithm-for-extracellular-recorded-data
#2
Florian Lieb, Hans-Georg Stark, Christiane Thielemann
OBJECTIVE Spike detection from extracellular recordings is a crucial preprocessing step when analyzing neuronal activity. The decision whether a specific part of the signal is a spike or not is important for any kind of other subsequent preprocessing steps, like spike sorting or burst detection in order to reduce the classification of erroneously identified spikes. Many spike detection algorithms have already been suggested, all working reasonably well whenever the signal-to-noise ratio is large enough. When the noise level is high, however, these algorithms have a poor performance...
March 8, 2017: Journal of Neural Engineering
https://www.readbyqxmd.com/read/28270025/a-scalable-weight-free-learning-algorithm-for-regulatory-control-of-cell-activity-in-spiking-neuronal-networks
#3
Xu Zhang, Greg Foderaro, Craig Henriquez, Silvia Ferrari
Recent developments in neural stimulation and recording technologies are providing scientists with the ability of recording and controlling the activity of individual neurons in vitro or in vivo, with very high spatial and temporal resolution. Tools such as optogenetics, for example, are having a significant impact in the neuroscience field by delivering optical firing control with the precision and spatiotemporal resolution required for investigating information processing and plasticity in biological brains...
December 22, 2016: International Journal of Neural Systems
https://www.readbyqxmd.com/read/28269358/modeling-the-debye-dielectric-response-in-the-time-domain-for-a-liquid-crystal-based-biopotential-optrode
#4
Hrishikesh Srinivas, Amr Al Abed, Francois Ladouceur, Nigel H Lovell, Leonardo Silvestri
Multielectrode arrays (MEAs) are widely used for recording biopotentials, with an ongoing research effort to improve their characteristics and performance. In this spirit, we are currently investigating a novel concept for a liquid crystal-based optical electrode (optrode) that has the potential to overcome some of the limitations of MEAs, including that of wiring complexity. In this paper we present a model to fully describe the electrical response of the proposed optrode to biopotentials, taking into account dielectric relaxation...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28268703/an-implantable-microelectrode-array-for-dopamine-and-electrophysiological-recordings-in-response-to-l-dopa-therapy-for-parkinson-s-disease
#5
Song Zhang, Yilin Song, Jun Jia, Guihua Xiao, Lili Yang, Min Sun, Mixia Wang, Xinxia Cai
Dual-mode multielectrode recordings have become routine in rodent neuroscience research. However, robust and reliable application of acute, multielectrode recording methods in brain especially for in vivo research remains a challenge. In patients with Parkinson's disease (PD), the efficacy of L-dopa therapy depends on its ability to restore Dopamine (DA) neurotransmission in the striatum. In this paper, We describe a low cost thin film 16 sites implantable microelectrode array (MEA) chip fabricated by standard lithography technology for in vivo test...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28268638/stochastic-modeling-of-spontaneous-bursting-activity-to-simulate-neural-responses-of-in-vitro-networks-on-multielectrode-arrays
#6
Gaetano Valenza, Gianluca Vannucci, Enzo Wanke, Enzo Pasquale Scilingo
The study of neuronal bursting activity, observed in cell-culture, is physiologically important because is correlated with synaptic transmission, plasticity, and information processing. However, besides strong ethical issues related to the use of animal models, there are many limitations due to experimental setup and neural signaling acquisition. In this study, we propose a stochastic modeling approach to simulate neural dynamics observed in networks of neocortical neurons from an ex vivo normal mouse. Specifically, we devised a stochastic version of the Izhichevich's model of cortical neurons, and simulated a network of excitatory and inhibitory neurons also accounting for cell signaling delays...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28266620/two-dimensional-electrophysiological-characterization-of-human-pluripotent-stem-cell-derived-cardiomyocyte-system
#7
Huanqi Zhu, Kelsey S Scharnhorst, Adam Z Stieg, James K Gimzewski, Itsunari Minami, Norio Nakatsuji, Haruko Nakano, Atsushi Nakano
Stem cell-derived cardiomyocytes provide a promising tool for human developmental biology, regenerative therapies, disease modeling, and drug discovery. As human pluripotent stem cell-derived cardiomyocytes remain functionally fetal-type, close monitoring of electrophysiological maturation is critical for their further application to biology and translation. However, to date, electrophysiological analyses of stem cell-derived cardiomyocytes has largely been limited by biologically undefined factors including 3D nature of embryoid body, sera from animals, and the feeder cells isolated from mouse...
March 7, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28261004/in-vivo-characterization-of-genetic-expression-of-virus-transduced-calcium-indicators-in-retinal-ganglion-cells-using-a-low-cost-funduscope
#8
Yao-Chuan Chang, Steven T Walston, Robert H Chow, James D Weiland
Virus-transduced calcium indicators are effective reporters of neural activity, offering the advantage of cell-specific labeling. To track the level of in vivo expression of genetically encoded calcium indicators (GECIs) in rodent retina, we developed a noninvasive imaging approach based on a custom-modified low-cost and simple fundus system that enabled us to monitor and characterize in vivo bright-field and fluorescence retinal image. The system clearly resolves individual retinal ganglion cells (RGCs) and axons...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28243194/scalable-lightweight-integrated-and-quick-to-assemble-sliq-hyperdrives-for-functional-circuit-dissection
#9
Li Liang, Stefan N Oline, Justin C Kirk, Lukas Ian Schmitt, Robert W Komorowski, Miguel Remondes, Michael M Halassa
Independently adjustable multielectrode arrays are routinely used to interrogate neuronal circuit function, enabling chronic in vivo monitoring of neuronal ensembles in freely behaving animals at a single-cell, single spike resolution. Despite the importance of this approach, its widespread use is limited by highly specialized design and fabrication methods. To address this, we have developed a Scalable, Lightweight, Integrated and Quick-to-assemble multielectrode array platform. This platform additionally integrates optical fibers with independently adjustable electrodes to allow simultaneous single unit recordings and circuit-specific optogenetic targeting and/or manipulation...
2017: Frontiers in Neural Circuits
https://www.readbyqxmd.com/read/28227600/modeling-the-debye-dielectric-response-in-the-time-domain-for-a-liquid-crystal-based-biopotential-optrode
#10
Hrishikesh Srinivas, Amr Al Abed, Francois Ladouceur, Nigel H Lovell, Leonardo Silvestri, Hrishikesh Srinivas, Amr Al Abed, Francois Ladouceur, Nigel H Lovell, Leonardo Silvestri, Hrishikesh Srinivas, Nigel H Lovell, Francois Ladouceur, Leonardo Silvestri, Amr Al Abed
Multielectrode arrays (MEAs) are widely used for recording biopotentials, with an ongoing research effort to improve their characteristics and performance. In this spirit, we are currently investigating a novel concept for a liquid crystal-based optical electrode (optrode) that has the potential to overcome some of the limitations of MEAs, including that of wiring complexity. In this paper we present a model to fully describe the electrical response of the proposed optrode to biopotentials, taking into account dielectric relaxation...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28226891/an-implantable-microelectrode-array-for-dopamine-and-electrophysiological-recordings-in-response-to-l-dopa-therapy-for-parkinson-s-disease
#11
Song Zhang, Yilin Song, Jun Jia, Guihua Xiao, Lili Yang, Min Sun, Mixia Wang, Xinxia Cai, Song Zhang, Yilin Song, Jun Jia, Guihua Xiao, Lili Yang, Min Sun, Mixia Wang, Xinxia Cai, Xinxia Cai, Lili Yang, Guihua Xiao, Mixia Wang, Yilin Song, Song Zhang, Min Sun, Jun Jia
Dual-mode multielectrode recordings have become routine in rodent neuroscience research. However, robust and reliable application of acute, multielectrode recording methods in brain especially for in vivo research remains a challenge. In patients with Parkinson's disease (PD), the efficacy of L-dopa therapy depends on its ability to restore Dopamine (DA) neurotransmission in the striatum. In this paper, We describe a low cost thin film 16 sites implantable microelectrode array (MEA) chip fabricated by standard lithography technology for in vivo test...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28226818/stochastic-modeling-of-spontaneous-bursting-activity-to-simulate-neural-responses-of-in-vitro-networks-on-multielectrode-arrays
#12
Gaetano Valenza, Gianluca Vannucci, Enzo Wanke, Enzo Pasquale Scilingo, Gaetano Valenza, Gianluca Vannucci, Enzo Wanke, Enzo Pasquale Scilingo, Gaetano Valenza, Enzo Wanke, Gianluca Vannucci, Enzo Pasquale Scilingo
The study of neuronal bursting activity, observed in cell-culture, is physiologically important because is correlated with synaptic transmission, plasticity, and information processing. However, besides strong ethical issues related to the use of animal models, there are many limitations due to experimental setup and neural signaling acquisition. In this study, we propose a stochastic modeling approach to simulate neural dynamics observed in networks of neocortical neurons from an ex vivo normal mouse. Specifically, we devised a stochastic version of the Izhichevich's model of cortical neurons, and simulated a network of excitatory and inhibitory neurons also accounting for cell signaling delays...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28226745/in-vivo-characterization-of-genetic-expression-of-virus-transduced-calcium-indicators-in-retinal-ganglion-cells-using-a-low-cost-funduscope
#13
Yao-Chuan Chang, Steven T Walston, Robert H Chow, James D Weiland, Yao-Chuan Chang, Steven T Walston, Robert H Chow, James D Weiland, Robert H Chow, Yao-Chuan Chang, Steven T Walston, James D Weiland
Virus-transduced calcium indicators are effective reporters of neural activity, offering the advantage of cell-specific labeling. To track the level of in vivo expression of genetically encoded calcium indicators (GECIs) in rodent retina, we developed a noninvasive imaging approach based on a custom-modified low-cost and simple fundus system that enabled us to monitor and characterize in vivo bright-field and fluorescence retinal image. The system clearly resolves individual retinal ganglion cells (RGCs) and axons...
August 2016: Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society
https://www.readbyqxmd.com/read/28197543/impedance-spectrum-in-cortical-tissue-implications-for-propagation-of-lfp-signals-on-the-microscopic-level
#14
Stéphanie Miceli, Torbjørn V Ness, Gaute T Einevoll, Dirk Schubert
Brain research investigating electrical activity within neural tissue is producing an increasing amount of physiological data including local field potentials (LFPs) obtained via extracellular in vivo and in vitro recordings. In order to correctly interpret such electrophysiological data, it is vital to adequately understand the electrical properties of neural tissue itself. An ongoing controversy in the field of neuroscience is whether such frequency-dependent effects bias LFP recordings and affect the proper interpretation of the signal...
January 2017: ENeuro
https://www.readbyqxmd.com/read/28186129/pan-retinal-characterisation-of-light-responses-from-ganglion-cells-in-the-developing-mouse-retina
#15
Gerrit Hilgen, Sahar Pirmoradian, Daniela Pamplona, Pierre Kornprobst, Bruno Cessac, Matthias H Hennig, Evelyne Sernagor
We have investigated the ontogeny of light-driven responses in mouse retinal ganglion cells (RGCs). Using a large-scale, high-density multielectrode array, we recorded from hundreds to thousands of RGCs simultaneously at pan-retinal level, including dorsal and ventral locations. Responses to different contrasts not only revealed a complex developmental profile for ON, OFF and ON-OFF responses, but also unveiled differences between dorsal and ventral RGC responses. At eye-opening, dorsal RGCs of all types were more responsive to light, perhaps indicating an environmental priority to nest viewing for pre-weaning pups...
February 10, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28167853/curcumin-alters-neural-plasticity-and-viability-of-intact-hippocampal-circuits-and-attenuates-behavioral-despair-and-cox-2-expression-in-chronically-stressed-rats
#16
Ga-Young Choi, Hyun-Bum Kim, Eun-Sang Hwang, Seok Lee, Min-Ji Kim, Ji-Young Choi, Sung-Ok Lee, Sang-Seong Kim, Ji-Ho Park
Curcumin is a major diarylheptanoid component of Curcuma longa with traditional usage for anxiety and depression. It has been known for the anti-inflammatory, antistress, and neurotropic effects. Here we examined curcumin effect in neural plasticity and cell viability. 60-channel multielectrode array was applied on organotypic hippocampal slice cultures (OHSCs) to monitor the effect of 10 μM curcumin in long-term depression (LTD) through low-frequency stimulation (LFS) to the Schaffer collaterals and commissural pathways...
2017: Mediators of Inflammation
https://www.readbyqxmd.com/read/28139961/functional-comparison-of-neuronal-cells-differentiated-from-human-induced-pluripotent-stem-cell-derived-neural-stem-cells-under-different-oxygen-and-medium-conditions
#17
Kazuto Yamazaki, Kazuyuki Fukushima, Michiko Sugawara, Yoshikuni Tabata, Yoichi Imaizumi, Yasuharu Ishihara, Masashi Ito, Kappei Tsukahara, Jun Kohyama, Hideyuki Okano
Because neurons are difficult to obtain from humans, generating functional neurons from human induced pluripotent stem cells (hiPSCs) is important for establishing physiological or disease-relevant screening systems for drug discovery. To examine the culture conditions leading to efficient differentiation of functional neural cells, we investigated the effects of oxygen stress (2% or 20% O2) and differentiation medium (DMEM/F12:Neurobasal-based [DN] or commercial [PhoenixSongs Biologicals; PS]) on the expression of genes related to neural differentiation, glutamate receptor function, and the formation of networks of neurons differentiated from hiPSCs (201B7) via long-term self-renewing neuroepithelial-like stem (lt-NES) cells...
December 2016: Journal of Biomolecular Screening
https://www.readbyqxmd.com/read/28123031/nonlinear-y-like-receptive-fields-in-the-early-visual-cortex-an-intermediate-stage-for-building-cue-invariant-receptive-fields-from-subcortical-y-cells
#18
Amol Gharat, Curtis L Baker
Many of the neurons in early visual cortex are selective for the orientation of boundaries defined by first-order cues (luminance) as well as second-order cues (contrast, texture). The neural circuit mechanism underlying this selectivity is still unclear, but some studies have proposed that it emerges from spatial nonlinearities of subcortical Y cells. To understand how inputs from the Y-cell pathway might be pooled to generate cue-invariant receptive fields, we recorded visual responses from single neurons in cat Area 18 using linear multielectrode arrays...
January 25, 2017: Journal of Neuroscience: the Official Journal of the Society for Neuroscience
https://www.readbyqxmd.com/read/28119054/an-analysis-of-current-source-density-profiles-activated-by-local-stimulation-in-the-mouse-auditory-cortex-in-vitro
#19
Daiki Yamamura, Sano Ayaka, Takashi Tateno
To examine local network properties of the mouse auditory cortex in vitro, we recorded extracellular spatiotemporal laminar profiles driven by short electric local stimulation on a planar multielectrode array substrate. The recorded local field potentials were subsequently evaluated using current source density (CSD) analysis to identify sources and sinks. Current sinks are thought to be an indicator of net synaptic current in the small volume of cortex surrounding the recording site. Thus, CSD analysis combined with multielectrode arrays enabled us to compare mean synaptic activity in response to small current stimuli on a layer-by-layer basis...
January 21, 2017: Brain Research
https://www.readbyqxmd.com/read/28087767/trial-by-trial-motor-cortical-correlates-of-a-rapidly-adapting-visuomotor-internal-model
#20
Sergey D Stavisky, Jonathan C Kao, Stephen I Ryu, Krishna V Shenoy
Accurate motor control is mediated by internal models of how neural activity generates movement. We examined neural correlates of an adapting internal model of visuomotor gain in motor cortex while two macaques performed a reaching task in which the gain scaling between the hand and a presented cursor was varied. Previous studies of cortical changes during visuomotor adaptation focused on preparatory and perimovement epochs and analyzed trial-averaged neural data. Here, we recorded simultaneous neural population activity using multielectrode arrays and focused our analysis on neural differences in the period before the target appeared...
February 15, 2017: Journal of Neuroscience: the Official Journal of the Society for Neuroscience
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