keyword
https://read.qxmd.com/read/38647414/statistical-genomics-analysis-of-simple-sequence-repeats-from-the-paphiopedilum-malipoense-transcriptome-reveals-control-knob-motifs-modulating-gene-expression
#21
JOURNAL ARTICLE
Yingyi Liang, Jing Hao, Jieyu Wang, Guoqiang Zhang, Yingjuan Su, Zhong-Jian Liu, Ting Wang
Simple sequence repeats (SSRs) are found in nonrandom distributions in genomes and are thought to impact gene expression. The distribution patterns of 48 295 SSRs of Paphiopedilum malipoense are mined and characterized based on the first full-length transcriptome and comprehensive transcriptome dataset from 12 organs. Statistical genomics analyses are used to investigate how SSRs in transcripts affect gene expression. The results demonstrate the correlations between SSR distributions, characteristics, and expression level...
April 22, 2024: Advanced Science (Weinheim, Baden-Wurttemberg, Germany)
https://read.qxmd.com/read/38647175/trailblazing-kr-xe-separation-the-birth-of-the-first-kr-selective-material
#22
JOURNAL ARTICLE
Mona H Mohamed, Islam Elzeny, Joshua Samuel, Yimeng Huang, Ahmed S Helal, Mitchell Galanek, Wenqian Xu, So Yeon Kim, Tony Pham, Lenore Miller, Adam Hogan, Brian Space, Ju Li, Sameh K Elsaidi
Efficient separation of Kr from Kr/Xe mixtures is pivotal in nuclear waste management and dark matter research. Thus far, scientists have encountered a formidable challenge: the absence of a material with the ability to selectively adsorb Kr over Xe at room temperature. This study presents a groundbreaking transformation of the renowned metal-organic framework (MOF) CuBTC, previously acknowledged for its Xe adsorption affinity, into an unparalleled Kr-selective adsorbent. This achievement stems from an innovative densification approach involving systematic compression of the MOF, where the crystal size, interparticle interaction, defects, and evacuation conditions are synergistically modulated...
April 22, 2024: ACS Applied Materials & Interfaces
https://read.qxmd.com/read/38647123/insights-into-the-biosynthesis-of-palladium-nanoparticles-for-oxygen-reduction-reaction-by-genetically-engineered-bacteria-of-shewanella-oneidensis-mr-1
#23
JOURNAL ARTICLE
Shihui Li, Jingwen Huang, Linjun Tong, Qingxin Li, Haikun Zhou, Xiaoting Deng, Jin Zhou, Zhiyong Xie, Xueduan Liu, Yili Liang
Owing to the increasing need for green synthesis and environmental protection, the utilization of biological organism-derived carbons as supports for noble-metal electrocatalysts has garnered public interest. Nevertheless, the mechanism by which microorganisms generate nanometals has not been fully understood yet. In the present study, we used genetically engineered bacteria of Shewanella oneidensis MR-1 (∆SO4317, ∆SO4320, ∆SO0618 and ∆SO3745) to explore the effect of surface substances including biofilm-associated protein (bpfA), protein secreted by type I secretion systems (TISS) and type II secretion systems (T2SS), and lipopolysaccharide in microbial synthesis of metal nanoparticles...
April 2024: Microbial Biotechnology
https://read.qxmd.com/read/38646010/a-synthetic-biology-approach-for-the-treatment-of-pollutants-with-microalgae
#24
REVIEW
Luke J Webster, Denys Villa-Gomez, Reuben Brown, William Clarke, Peer M Schenk
The increase in global population and industrial development has led to a significant release of organic and inorganic pollutants into water streams, threatening human health and ecosystems. Microalgae, encompassing eukaryotic protists and prokaryotic cyanobacteria, have emerged as a sustainable and cost-effective solution for removing these pollutants and mitigating carbon emissions. Various microalgae species, such as C. vulgaris, P. tricornutum, N. oceanica, A. platensis, and C. reinhardtii, have demonstrated their ability to eliminate heavy metals, salinity, plastics, and pesticides...
2024: Frontiers in Bioengineering and Biotechnology
https://read.qxmd.com/read/38645432/advances-in-tissue-engineering-and-biofabrication-for-in-vitro-skin-modeling
#25
JOURNAL ARTICLE
Sarah C Wistner, Layla Rashad, Gymama Slaughter
The global prevalence of skin disease and injury is continually increasing, yet conventional cell-based models used to study these conditions do not accurately reflect the complexity of human skin. The lack of inadequate in vitro modeling has resulted in reliance on animal-based models to test pharmaceuticals, biomedical devices, and industrial and environmental toxins to address clinical needs. These in vivo models are monetarily and morally expensive and are poor predictors of human tissue responses and clinical trial outcomes...
November 2023: Bioprinting
https://read.qxmd.com/read/38645097/intermittent-cyclic-stretch-of-engineered-ligaments-drives-hierarchical-collagen-fiber-maturation-in-a-dose-and-organizational-dependent-manner
#26
Leia D Troop, Jennifer L Puetzer
Hierarchical collagen fibers are the primary source of strength in tendons and ligaments, however these fibers do not regenerate after injury or with repair, resulting in limited treatment options. We previously developed a culture system that guides ACL fibroblasts to produce native-sized fibers and fascicles by 6 weeks. These constructs are promising ligament replacements, but further maturation is needed. Mechanical cues are critical for development in vivo and in engineered tissues; however, the effect on larger fiber and fascicle formation is largely unknown...
April 10, 2024: bioRxiv
https://read.qxmd.com/read/38644975/micro-and-mesoscale-aspects-of-neurodegeneration-in-engineered-human-neural-networks-carrying-the-lrrk2-g2019s-mutation
#27
JOURNAL ARTICLE
Vibeke Devold Valderhaug, Ola Huse Ramstad, Rosanne van de Wijdeven, Kristine Heiney, Stefano Nichele, Axel Sandvig, Ioanna Sandvig
Mutations in the leucine-rich repeat kinase 2 (LRRK2) gene have been widely linked to Parkinson's disease, where the G2019S variant has been shown to contribute uniquely to both familial and sporadic forms of the disease. LRRK2-related mutations have been extensively studied, yet the wide variety of cellular and network events related to these mutations remain poorly understood. The advancement and availability of tools for neural engineering now enable modeling of selected pathological aspects of neurodegenerative disease in human neural networks in vitro ...
2024: Frontiers in Cellular Neuroscience
https://read.qxmd.com/read/38644939/transparent-and-stretchable-au%C3%A2-ag-nanowire-recording-microelectrode-arrays
#28
JOURNAL ARTICLE
Zhiyuan Chen, Khanh Nguyen, Grant Kowalik, Xinyu Shi, Jinbi Tian, Mitansh Doshi, Bridget R Alber, Xun Guan, Xitong Liu, Xin Ning, Matthew W Kay, Luyao Lu
Transparent microelectrodes have received much attention from the biomedical community due to their unique advantages in concurrent crosstalk-free electrical and optical interrogation of cell/tissue activity. Despite recent progress in constructing transparent microelectrodes, a major challenge is to simultaneously achieve desirable mechanical stretchability, optical transparency, electrochemical performance, and chemical stability for high-fidelity, conformal, and stable interfacing with soft tissue/organ systems...
May 25, 2023: Advanced Materials Technologies
https://read.qxmd.com/read/38644861/response-of-heterologously-expressed-pressure-sensor-actuator-modulator-macromolecule-to-external-mechanical-stress
#29
JOURNAL ARTICLE
Subrata Batabyal, Chinenye Idigo, Darryl Narcisse, Adnan Dibas, Samarendra Mohanty
Cells from different organs in the body experience a range of mechanical and osmotic pressures that change in various diseases, including neurological, cardiovascular, ophthalmological, and renal diseases. Here, we demonstrate the use of an engineered Sensor-Actuator-Modulator (SAM) of microbial origin derived from a mechanosensitive channel of large conductance (MscL) for sensing external mechanical stress and modulating activities of mammalian cells. SAM is reliably expressed in the mammalian cell membrane and acts as a tension-activated pressure release valve...
April 30, 2024: Heliyon
https://read.qxmd.com/read/38644798/potential-biomedical-applications-of-terbium-based-nanoparticles-tbnps-a-review-on-recent-advancement
#30
REVIEW
Sourav Mohanto, Aritra Biswas, Amol Dilip Gholap, Shadma Wahab, Adrija Bhunia, Sagnik Nag, Mohammed Gulzar Ahmed
The scientific world is increasingly focusing on rare earth metal oxide nanomaterials due to their consequential biological prospects, navigated by breakthroughs in biomedical applications. Terbium belongs to rare earth elements (lanthanide series) and possesses remarkably strong luminescence at lower energy emission and signal transduction properties, ushering in wide applications for diagnostic measurements (i.e., bioimaging, biosensors, fluorescence imaging, etc.) in the biomedical sectors. In addition, the theranostic applications of terbium-based nanoparticles further permit the targeted delivery of drugs to the specific site of the disease...
April 22, 2024: ACS Biomaterials Science & Engineering
https://read.qxmd.com/read/38643588/topography-based-modulation-of-environmental-factors-as-a-mechanism-for-intertidal-microhabitat-formation-a-basis-for-marine-ecological-design
#31
REVIEW
Franz Bauer, Antony M Knights, Mick E Hanley, John N Griffin, Andy Foggo, Austin Brown, Louise B Firth
Topographic complexity is often considered to be closely associated with habitat complexity and niche diversity; however, complex topography per se does not imply habitat suitability. Rather, ecologically suitable habitats may emerge if topographic features interact with environmental factors and thereby alter their surrounding microenvironment to the benefit of local organisms (e.g., resource provisioning, stress mitigation). Topography may thus act as a key modulator of abiotic stressors and biotic pressures, particularly in environmentally challenging intertidal systems...
April 20, 2024: Marine Pollution Bulletin
https://read.qxmd.com/read/38643271/analysis-of-the-role-of-perfusion-mechanical-and-electrical-stimulation-in-bioreactors-for-cardiac-tissue-engineering
#32
REVIEW
Jorge Bravo-Olín, Sabina A Martínez-Carreón, Emmanuel Francisco-Solano, Alvaro R Lara, Nohra E Beltran-Vargas
Since cardiovascular diseases (CVDs) are globally one of the leading causes of death, of which myocardial infarction (MI) can cause irreversible damage and decrease survivors' quality of life, novel therapeutics are needed. Current approaches such as organ transplantation do not fully restore cardiac function or are limited. As a valuable strategy, tissue engineering seeks to obtain constructs that resemble myocardial tissue, vessels, and heart valves using cells, biomaterials as scaffolds, biochemical and physical stimuli...
April 20, 2024: Bioprocess and Biosystems Engineering
https://read.qxmd.com/read/38643047/frontline-providers-and-patients-perspectives-on-improving-diagnostic-safety-in-the-emergency-department-a-qualitative-study
#33
JOURNAL ARTICLE
Courtney W Mangus, Tyler G James, Sarah J Parker, Elizabeth Duffy, P Paul Chandanabhumma, Caitlin M Cassady, Fernanda Bellolio, Kalyan S Pasupathy, Milisa Manojlovich, Hardeep Singh, Prashant Mahajan
BACKGROUND: Few studies have described the insights of frontline health care providers and patients on how the diagnostic process can be improved in the emergency department (ED), a setting at high risk for diagnostic errors. The authors aimed to identify the perspectives of providers and patients on the diagnostic process and identify potential interventions to improve diagnostic safety. METHODS: Semistructured interviews were conducted with 10 ED physicians, 15 ED nurses, and 9 patients/caregivers at two separate health systems...
March 12, 2024: Joint Commission Journal on Quality and Patient Safety
https://read.qxmd.com/read/38643041/microphysiological-systems-inspired-by-leaf-venation
#34
JOURNAL ARTICLE
Mao Mao, Zijie Meng, Jiankang He, Dichen Li
Nature-inspired microfluidic networks are revolutionizing microphysiological systems, allowing for the precise emulation of human physiology. This article delves into the fabrication techniques of leaf-venation-inspired (LVI) microfluidic networks and explores their transformative applications in organ-on-a-chip and tissue engineering, showcasing their pivotal role in advancing biomedical research.
April 19, 2024: Trends in Biotechnology
https://read.qxmd.com/read/38643032/expression-of-an-endo-rhamnogalacturonase-from-aspergillus-aculeatus-enhances-release-of-arabidopsis-transparent-mucilage
#35
JOURNAL ARTICLE
Takao Ohashi, Yurika Mabira, Yutaro Mitsuyoshi, Hiroyuki Kajiura, Ryo Misaki, Takeshi Ishimizu, Kazuhito Fujiyama
Mucilage is a gelatinous and sticky hydrophilic polysaccharide released from epidermal cells of seed coat after the hydration of mature seeds and is composed primarily of unbranched rhamnogalacturonan I (RG-I). In this study, we produced a recombinant endo-RG-I hydrolase from Aspergillus aculeatus (AaRhgA) in the fission yeast Schizosaccharomyces pombe and examined its substrate preference for pyridylaminated (PA) RG-I with the various degrees of polymerization (DP). Recombinant AaRhgA requires PA-RG-I with a DP of 10 or higher for its hydrolase activity...
April 19, 2024: Journal of Bioscience and Bioengineering
https://read.qxmd.com/read/38642771/effects-of-micro-nano-plastics-on-the-environmental-biogeochemical-cycle-of-nitrogen-a-comprehensive-review
#36
REVIEW
Tingting Zhang, Xiao-San Luo, Amit Kumar, Xin Liu, Xin Tong, Xuewen Yao, Jiayi Fan, Zhihuai Chen, Sadashiv Chaturvedi
Micro-nano plastics (MNPs; size < 5 mm), ubiquitous and emerging pollutants, accumulated in the natural environment through various sources, and are likely to interact with nutrients, thereby influencing their biogeochemical cycle. Increasing scientific evidences reveal that MNPs can affect nitrogen (N) cycle processes by affecting biotopes and organisms in the environmental matrix and MNPs biofilms, thus plays a crucial role in nitrous oxide (N2 O) and ammonia (NH3 ) emission. Yet, the mechanism and key processes behind this have not been systematically reviewed in natural environments...
April 18, 2024: Chemosphere
https://read.qxmd.com/read/38642663/deciphering-styrene-oxide-tolerance-mechanisms-in-gluconobacter-oxydans-mutant-strain
#37
JOURNAL ARTICLE
Yan Chen, Fei Liu, Aobo Sha, Meijuan Xu, Zhiming Rao, Xian Zhang
Chemical production wastewater contains large amounts of organic solvents (OSs), which pose a significant threat to the environment. In this study, a 10 g·L-1 styrene oxide tolerant strain with broad-spectrum OSs tolerance was obtained via adaptive laboratory evolution. The mechanisms underlying the high OS tolerance of tolerant strain were investigated by integrating physiological, multi-omics, and genetic engineering analyses. Physiological changes are one of the main factors responsible for the high OS tolerance in mutant strains...
April 18, 2024: Bioresource Technology
https://read.qxmd.com/read/38642002/determining-structures-of-layer-by-layer-spin-coated-zinc-dicarboxylate-based-metal-organic-thin-films
#38
JOURNAL ARTICLE
Jan C Fischer, Robbin Steentjes, Dong-Hui Chen, Bryce S Richards, Egbert Zojer, Christof Wöll, Ian A Howard
Thin films of crystalline solids with substantial free volume from organic chromophores and metal secondary building units (SBUs) are promising for engineering new optoelectronic properties through control of interchromophore coupling. Zn-based SBUs are especially relevant in this case because they avoid quenching the chromophore's luminescence. We find that layer-by-layer spin-coating using Zn acetate dihydrate and benzene-1,4-dicarboxylic acid (H2BDC) and biphenyl-4,4'-dicarboxylic acid (H2BPDC) linkers easily produces crystalline thin films...
April 20, 2024: Chemistry: a European Journal
https://read.qxmd.com/read/38641886/axial-phenoxylation-of-aluminum-phthalocyanines-for-improved-cannabinoid-sensitivity-in-otft-sensors
#39
JOURNAL ARTICLE
Halynne R Lamontagne, Rosemary R Cranston, Zachary J Comeau, Cory S Harris, Adam J Shuhendler, Benoît H Lessard
Cannabis producers, consumers, and regulators need fast, accurate, point-of-use sensors to detect Δ9 -tetrahydrocannabinol (THC) and cannabidiol (CBD) from both liquid and vapor source samples, and phthalocyanine-based organic thin-film transistors (OTFTs) provide a cost-effective solution. Chloro aluminum phthalocyanine (Cl-AlPc) has emerged as a promising material due to its unique coordinating interactions with cannabinoids, allowing for superior sensitivity. This work explores the molecular engineering of AlPc to tune and enhance these interactions, where a series of novel phenxoylated R-AlPcs are synthesized and integrated into OTFTs, which are then exposed to THC and CBD solution and vapor samples...
April 19, 2024: Advanced Science (Weinheim, Baden-Wurttemberg, Germany)
https://read.qxmd.com/read/38641683/explainable-prediction-of-node-labels-in-multilayer-networks-a-case-study-of-turnover-prediction-in-organizations
#40
JOURNAL ARTICLE
László Gadár, János Abonyi
In real-world classification problems, it is important to build accurate prediction models and provide information that can improve decision-making. Decision-support tools are often based on network models, and this article uses information encoded by social networks to solve the problem of employer turnover. However, understanding the factors behind black-box prediction models can be challenging. Our question was about the predictability of employee turnover, given information from the multilayer network that describes collaborations and perceptions that assess the performance of organizations that indicate the success of cooperation...
April 19, 2024: Scientific Reports
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