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Plant microbial interaction

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https://www.readbyqxmd.com/read/28103503/sedative-hypnotic-like-effect-and-molecular-docking-of-di-naphthodiospyrol-from-diospyros-lotus-in-an-animal-model
#1
Abdur Rauf, Taibi Ben Hadda, Ghias Uddin, José P Cerón-Carrasco, Jorge Peña-García, Horacio Pérez-Sánchez, Haroon Khan, Saud Bawazeer, Seema Patel, Mohammad S Mubarak, Tareq Abu-Izneid, Yahia Nasser Mabkhot
BACKGROUND: Diospyros lotus Linn commonly known as date-plum, or Caucasian persimmon has multiple uses in folk medicine. Various parts of this plant is used for alleviating lumbago, dysponea, hemorrhage, insomnia, and hiccup. The plant extracts possess a variety of biological activities, such as anti-inflammatory, sedative, febrifuge, anti-microbial, vermifuge, and anti-hypertensive. AIM/HYPOTHESIS: The aim of the present work is to investigate the sedative-hypnotic effect of a rare dimeric napthoquione 1 obtained from the chloroform soluble fraction of D...
January 16, 2017: Biomedicine & Pharmacotherapy, Biomédecine & Pharmacothérapie
https://www.readbyqxmd.com/read/28093120/elucidating-rhizosphere-processes-by-mass-spectrometry-a-review
#2
REVIEW
Ariana Rugova, Markus Puschenreiter, Gunda Koellensperger, Stephan Hann
The presented review discusses state-of-the-art mass spectrometric methods, which have been developed and applied for investigation of chemical processes in the soil-root interface, the so-called rhizosphere. Rhizosphere soil's physical and chemical characteristics are to a great extent influenced by a complex mixture of compounds released from plant roots, i.e. root exudates, which have a high impact on nutrient and trace element dynamics in the soil-root interface as well as on microbial activities or soil physico-chemical characteristics...
March 1, 2017: Analytica Chimica Acta
https://www.readbyqxmd.com/read/28073253/harnessing-insect-microbe-chemical-communications-to-control-insect-pests-of-agricultural-systems
#3
John J Beck, Rachel L Vannette
Insect pests cause serious economic, yield, and food safety problems to managed crops worldwide. Compounding these problems, insect pests often vector pathogenic or toxigenic microbes to plants. Previous work has considered plant-insect and plant-microbe interactions separately. Although insects are well-understood to use plant volatiles to locate hosts, microorganisms can produce distinct and abundant volatile compounds that in some cases strongly attract insects. In this paper, we focus on the microbial contribution to plant volatile blends, highlighting the compounds emitted and the potential for variation in microbial emission...
January 11, 2017: Journal of Agricultural and Food Chemistry
https://www.readbyqxmd.com/read/28058470/plant-community-richness-mediates-inhibitory-interactions-and-resource-competition-between-streptomyces-and-fusarium-populations-in-the-rhizosphere
#4
Adil Essarioui, Nicholas LeBlanc, Harold C Kistler, Linda L Kinkel
Plant community characteristics impact rhizosphere Streptomyces nutrient competition and antagonistic capacities. However, the effects of Streptomyces on, and their responses to, coexisting microorganisms as a function of plant host or plant species richness have received little attention. In this work, we characterized antagonistic activities and nutrient use among Streptomyces and Fusarium from the rhizosphere of Andropogon gerardii (Ag) and Lespedeza capitata (Lc) plants growing in communities of 1 (monoculture) or 16 (polyculture) plant species...
January 5, 2017: Microbial Ecology
https://www.readbyqxmd.com/read/28056814/competition-assays-and-physiological-experiments-of-soil-and-phyllosphere-yeasts-identify-candida-subhashii-as-a-novel-antagonist-of-filamentous-fungi
#5
Maja Hilber-Bodmer, Michael Schmid, Christian H Ahrens, Florian M Freimoser
BACKGROUND: While recent advances in next generation sequencing technologies have enabled researchers to readily identify countless microbial species in soil, rhizosphere, and phyllosphere microbiomes, the biological functions of the majority of these species are unknown. Functional studies are therefore urgently needed in order to characterize the plethora of microorganisms that are being identified and to point out species that may be used for biotechnology or plant protection. Here, we used a dual culture assay and growth analyses to characterise yeasts (40 different isolates) and their antagonistic effect on 16 filamentous fungi; comprising plant pathogens, antagonists, and saprophytes...
January 5, 2017: BMC Microbiology
https://www.readbyqxmd.com/read/28011129/fast-and-sensitive-in-vivo-studies-under-controlled-environmental-conditions-to-substitute-long-term-field-trials-with-genetically-modified-plants
#6
Patricia Horn, André Schlichting, Christel Baum, Ute Hammesfahr, Sören Thiele-Bruhn, Peter Leinweber, Inge Broer
We introduce an easy, fast and effective method to analyze the influence of genetically modified (GM) plants on soil and model organisms in the laboratory to substitute laborious and time consuming field trials. For the studies described here we focused on two GM plants of the so-called 3rd generation: GM plants producing pharmaceuticals (PMP) and plant made industrials (PMI). Cyanophycin synthetase (cphA) was chosen as model for PMI and Choleratoxin B (CTB) as model for PMP. The model genes are expressed in transgenic roots of composite Vicia hirsuta plants grown in petri dishes for semi-sterile growth or small containers filled with non-sterile soil...
December 21, 2016: Journal of Biotechnology
https://www.readbyqxmd.com/read/28000056/identification-and-genomic-analysis-of-antifungal-property-of-a-tomato-root-endophyte-pseudomonas-sp-p21
#7
Rongqin Ma, Yi Cao, Zhiqiang Cheng, Shaonan Lei, Wei Huang, Xin Li, Yongkang Song, Baoyu Tian
Pseudomonas sp., which occupy a variety of ecological niches, have been widely studied for their versatile metabolic capacity to promote plant growth, suppress microbial pathogens, and induce systemic resistance in plants. In this study, a Pseudomonas sp. strain p21, which was isolated from tomato root endophytes, was identified as having antagonism against Aspergillus niger. Further analysis showed that this strain had the ability to biosynthesise siderophores and was less effective in inhibiting the growth of A...
December 20, 2016: Antonie Van Leeuwenhoek
https://www.readbyqxmd.com/read/27986827/potential-of-semiarid-soil-from-caatinga-biome-as-a-novel-source-for-mining-lignocellulose-degrading-enzymes
#8
Gileno Lacerda Júnior, Melline Noronha, Sanderson Tarciso de Sousa, Lucélia Cabral, Daniela Domingos, Mírian Sáber, Itamar de Melo, Valéria Oliveira
The litterfall is the major organic material deposited in soil of Brazilian Caatinga biome, thus providing the ideal conditions for plant biomass-degrading microorganisms to thrive. Herein, the phylogenetic composition and lignocellulose degrading capacity have been explored for the first time from a fosmid library dataset of Caatinga soil by sequence-based screening. A complex bacterial community dominated by Proteobacteria and Actinobacteria was unraveled. SEED subsystems-based annotations revealed a broad range of genes assigned to carbohydrate and aromatic compounds metabolism, indicating microbial ability to utilize plant-derived material...
December 15, 2016: FEMS Microbiology Ecology
https://www.readbyqxmd.com/read/27984592/inferring-aggregated-functional-traits-from-metagenomic-data-using-constrained-non-negative-matrix-factorization-application-to-fiber-degradation-in-the-human-gut-microbiota
#9
Sébastien Raguideau, Sandra Plancade, Nicolas Pons, Marion Leclerc, Béatrice Laroche
Whole Genome Shotgun (WGS) metagenomics is increasingly used to study the structure and functions of complex microbial ecosystems, both from the taxonomic and functional point of view. Gene inventories of otherwise uncultured microbial communities make the direct functional profiling of microbial communities possible. The concept of community aggregated trait has been adapted from environmental and plant functional ecology to the framework of microbial ecology. Community aggregated traits are quantified from WGS data by computing the abundance of relevant marker genes...
December 2016: PLoS Computational Biology
https://www.readbyqxmd.com/read/27943556/it-is-elemental-soil-nutrient-stoichiometry-drives-bacterial-diversity
#10
Manuel Delgado-Baquerizo, Peter B Reich, Amit N Khachane, Colin D Campbell, Nadine Thomas, Thomas E Freitag, Waleed Abu Al-Soud, Søren Sørensen, Richard D Bardgett, Brajesh K Singh
It is well established that resource quantity and elemental stoichiometry play major roles in shaping below and aboveground plant biodiversity, but their importance for shaping microbial diversity in soil remains unclear. Here, we used statistical modeling on a regional database covering 179 locations and six ecosystem types across Scotland to evaluate the roles of total carbon (C), nitrogen (N) and phosphorus (P) availabilities and ratios, together with land use, climate and biotic and abiotic factors, in determining regional scale patterns of soil bacterial diversity...
December 10, 2016: Environmental Microbiology
https://www.readbyqxmd.com/read/27941816/cellulosomes-bacterial-nanomachines-for-dismantling-plant-polysaccharides
#11
Lior Artzi, Edward A Bayer, Sarah Moraïs
Cellulosomes are multienzyme complexes that are produced by anaerobic cellulolytic bacteria for the degradation of lignocellulosic biomass. They comprise a complex of scaffoldin, which is the structural subunit, and various enzymatic subunits. The intersubunit interactions in these multienzyme complexes are mediated by cohesin and dockerin modules. Cellulosome-producing bacteria have been isolated from a large variety of environments, which reflects their prevalence and the importance of this microbial enzymatic strategy...
December 12, 2016: Nature Reviews. Microbiology
https://www.readbyqxmd.com/read/27924118/native-halo-tolerant-plant-growth-promoting-rhizobacteria-enterococcus-and-pantoea-sp-improve-seed-yield-of-mungbean-vigna-radiata-l-under-soil-salinity-by-reducing-sodium-uptake-and-stress-injury
#12
Meenu Panwar, Rupinder Tewari, Harsh Nayyar
The beneficial microbial-plant interaction plays important role in the soil health, crop growth and productivity. Plant growth promoting rhizobacteria (PGPR) are such beneficial microorganisms, which in association with plant roots not only promote their growth but also help in counteracting the detrimental effects of soil stresses. Salt stress is one such stress, frequently confronted by the plants. The present study aimed at isolation and identification of PGPR inhabiting the mungbean rhizosphere, testing them for salt (NaCl) tolerance and subsequently in salt-supplemented mungbean crop...
October 2016: Physiology and Molecular Biology of Plants: An International Journal of Functional Plant Biology
https://www.readbyqxmd.com/read/27917379/current-understanding-of-the-correlation-of-lignin-structure-with-biomass-recalcitrance
#13
REVIEW
Mi Li, Yunqiao Pu, Arthur J Ragauskas
Lignin, a complex aromatic polymer in terrestrial plants, contributes significantly to biomass recalcitrance to microbial and/or enzymatic deconstruction. To reduce biomass recalcitrance, substantial endeavors have been exerted on pretreatment and lignin engineering in the past few decades. Lignin removal and/or alteration of lignin structure have been shown to result in reduced biomass recalcitrance with improved cell wall digestibility. While high lignin content is usually a barrier to a cost-efficient application of bioresources to biofuels, the direct correlation of lignin structure and its concomitant properties with biomass remains unclear due to the complexity of cell wall and lignin structure...
2016: Frontiers in Chemistry
https://www.readbyqxmd.com/read/27917161/the-interaction-between-plants-and-bacteria-in-the-remediation-of-petroleum-hydrocarbons-an-environmental-perspective
#14
REVIEW
Panagiotis Gkorezis, Matteo Daghio, Andrea Franzetti, Jonathan D Van Hamme, Wouter Sillen, Jaco Vangronsveld
Widespread pollution of terrestrial ecosystems with petroleum hydrocarbons (PHCs) has generated a need for remediation and, given that many PHCs are biodegradable, bio- and phyto-remediation are often viable approaches for active and passive remediation. This review focuses on phytoremediation with particular interest on the interactions between and use of plant-associated bacteria to restore PHC polluted sites. Plant-associated bacteria include endophytic, phyllospheric, and rhizospheric bacteria, and cooperation between these bacteria and their host plants allows for greater plant survivability and treatment outcomes in contaminated sites...
2016: Frontiers in Microbiology
https://www.readbyqxmd.com/read/27917159/predominately-uncultured-microbes-as-sources-of-bioactive-agents
#15
REVIEW
David J Newman
In this short review, I am discussing the relatively recent awareness of the role of symbionts in plant, marine-invertebrates and fungal areas. It is now quite obvious that in marine-invertebrates, a majority of compounds found are from either as yet unculturable or poorly culturable microbes, and techniques involving "state of the art" genomic analyses and subsequent computerized analyses are required to investigate these interactions. In the plant kingdom evidence is amassing that endophytes (mainly fungal in nature) are heavily involved in secondary metabolite production and that mimicking the microbial interactions of fermentable microbes leads to involvement of previously unrecognized gene clusters (cryptic clusters is one name used), that when activated, produce previously unknown bioactive molecules...
2016: Frontiers in Microbiology
https://www.readbyqxmd.com/read/27913282/proteomics-provides-insights-into-biological-pathways-altered-by-plant-growth-promoting-bacteria-and-arbuscular-mycorrhiza-in-sorghum-grown-in-marginal-soil
#16
Faten Dhawi, Rupali Datta, Wusirika Ramakrishna
Sorghum is an economically important crop, a model system for gene discovery and a biofuel source. Sorghum seedlings were subjected to three microbial treatments, plant growth promoting bacteria (B), arbuscular mycorrhizal (AM) fungi mix with two Glomus species (G. aggregatum and G. etunicatum), Funelliformis mosseae and Rhizophagus irregularis (My), and B and My combined (My+B). Proteomic analysis was conducted followed by integration with metabolite, plant biomass and nutrient data. Out of 366 differentially expressed proteins in sorghum roots, 44 upregulated proteins overlapping among three treatment groups showed positive correlation with sorghum biomass or element uptake or both...
February 2017: Biochimica et Biophysica Acta
https://www.readbyqxmd.com/read/27912011/reduced-snow-cover-alters-root-microbe-interactions-and-decreases-nitrification-rates-in-a-northern-hardwood-forest
#17
Patrick O Sorensen, Pamela H Templer, Lynn Christenson, Jorge Duran, Timothy Fahey, Melany C Fisk, Peter M Groffman, Jennifer L Morse, Adrien C Finzi
Snow cover is projected to decline during the next century in many ecosystems that currently experience a seasonal snowpack. Because snow insulates soils from frigid winter air temperatures, soils are expected to become colder and experience more winter soil freeze-thaw cycles as snow cover continues to decline. Tree roots are adversely affected by snowpack reduction, but whether loss of snow will affect root-microbe interactions remains largely unknown. The objective of this study was to distinguish and attribute direct (e...
December 2016: Ecology
https://www.readbyqxmd.com/read/27907121/environmental-and-geographical-factors-structure-soil-microbial-diversity-in-new-caledonian-ultramafic-substrates-a-metagenomic-approach
#18
Véronique Gourmelon, Laurent Maggia, Jeff R Powell, Sarah Gigante, Sara Hortal, Claire Gueunier, Kelly Letellier, Fabian Carriconde
Soil microorganisms play key roles in ecosystem functioning and are known to be influenced by biotic and abiotic factors, such as plant cover or edaphic parameters. New Caledonia, a biodiversity hotspot located in the southwest Pacific, is one-third covered by ultramafic substrates. These types of soils are notably characterised by low nutrient content and high heavy metal concentrations. Ultramafic outcrops harbour diverse vegetation types and remarkable plant diversity. In this study, we aimed to assess soil bacterial and fungal diversity in New Caledonian ultramafic substrates and to determine whether floristic composition, edaphic parameters and geographical factors affect this microbial diversity...
2016: PloS One
https://www.readbyqxmd.com/read/27896478/soil-microbial-communities-buffer-physiological-responses-to-drought-stress-in-three-hardwood-species
#19
Steven A Kannenberg, Richard P Phillips
Trees possess myriad adaptations for coping with drought stress, but the extent to which their drought responses are influenced by interactions with soil microbes is poorly understood. To explore the role of microbes in mediating tree responses to drought stress, we exposed saplings of three species (Acer saccharum, Liriodendron tulipifera, and Quercus alba) to a four week experimental drought in mesocosms. Half of the pots were inoculated with a live soil slurry (i.e., a microbial inoculum derived from soils beneath the canopies of mature A...
November 28, 2016: Oecologia
https://www.readbyqxmd.com/read/27888579/non-target-effects-of-fungicides-on-nectar-inhabiting-fungi-of-almond-flowers
#20
Robert N Schaeffer, Rachel L Vannette, Claire Brittain, Neal M Williams, Tadashi Fukami
Nectar mediates interactions between plants and pollinators in natural and agricultural systems. Specialized microorganisms are common nectar inhabitants, and potentially important mediators of plant-pollinator interactions. However, their diversity and role in mediating pollination services in agricultural systems are poorly characterized. Moreover, agrochemicals are commonly applied to minimize crop damage, but may present ecological consequences for non-target organisms. Assessment of ecological risk has tended to focus on beneficial macroorganisms such as pollinators, with less attention paid to microorganisms...
November 26, 2016: Environmental Microbiology Reports
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