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Plant microbial interaction

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https://www.readbyqxmd.com/read/28643880/effects-of-discrete-bioactive-microbial-volatiles-on-plants-and-fungi
#1
REVIEW
Birgit Piechulla, Marie-Chantal Lemfack, Marco Kai
Plants live in association with microorganisms, which are well known as a rich source of specialized metabolits, including volatile compounds. The increasing numbers of described plant microbiomes allowed manifold phylogenetic tree deductions, but less emphasis is presently put on the metabolic capacities of plant-associated microorganisms. With the focus on small volatile metabolites we summarize i) the knowledge of prominent bacteria of plant microbiomes, ii) present the state-of-the-art of individual (discrete) microbial organic and inorganic volatiles affecting plants and fungi, and iii) emphasize the high potential of microbial volatiles in mediating microbe-plant interactions...
June 23, 2017: Plant, Cell & Environment
https://www.readbyqxmd.com/read/28622659/understanding-and-exploiting-plant-beneficial-microbes
#2
REVIEW
Omri M Finkel, Gabriel Castrillo, Sur Herrera Paredes, Isai Salas González, Jeffery L Dangl
After a century of incremental research, technological advances, coupled with a need for sustainable crop yield increases, have reinvigorated the study of beneficial plant-microbe interactions with attention focused on how microbiomes alter plant phenotypes. We review recent advances in plant microbiome research, and describe potential applications for increasing crop productivity. The phylogenetic diversity of plant microbiomes is increasingly well characterized, and their functional diversity is becoming more accessible...
June 13, 2017: Current Opinion in Plant Biology
https://www.readbyqxmd.com/read/28621813/legacy-effects-of-drought-on-plant-soil-feedbacks-and-plant-plant-interactions
#3
Aurore Kaisermann, Franciska T de Vries, Robert I Griffiths, Richard D Bardgett
Interactions between aboveground and belowground biota have the potential to modify ecosystem responses to climate change, yet little is known about how drought influences plant-soil feedbacks with respect to microbial mediation of plant community dynamics. We tested the hypothesis that drought modifies plant-soil feedback with consequences for plant competition. We measured net pairwise plant-soil feedbacks for two grassland plant species grown in monoculture and competition in soils that had or had not been subjected to a previous drought; these were then exposed to a subsequent drought...
June 16, 2017: New Phytologist
https://www.readbyqxmd.com/read/28618206/grazing-of-leaf-associated-cercomonads-protists-rhizaria-cercozoa-structures-bacterial-community-composition-and-function
#4
Sebastian Flues, David Bass, Michael Bonkowski
Preferential food selection in protists is well documented, but we still lack basic understanding on how protist predation modifies the taxonomic and functional composition of bacterial communities. We conducted feeding trials using leaf-associated cercomonad Cercozoa by incubating them on a standardized, diverse bacterial community washed from plant leaves. We used a shotgun metagenomics approach to investigate the taxonomic and functional changes of the bacterial community after five days protist predation upon bacteria...
June 15, 2017: Environmental Microbiology
https://www.readbyqxmd.com/read/28616178/population-differences-in-host-plant-preference-and-the-importance-of-yeast-and-plant-substrate-to-volatile-composition
#5
Priya Date, Amber Crowley-Gall, Aaron F Diefendorf, Stephanie M Rollmann
Divergent selection between environments can result in changes to the behavior of an organism. In many insects, volatile compounds are a primary means by which host plants are recognized and shifts in plant availability can result in changes to host preference. Both the plant substrate and microorganisms can influence this behavior, and host plant choice can have an impact on the performance of the organism. In Drosophila mojavensis, four geographically isolated populations each use different cacti as feeding and oviposition substrates and identify those cacti by the composition of the volatile odorants emitted...
June 2017: Ecology and Evolution
https://www.readbyqxmd.com/read/28611735/the-effects-of-cropping-regimes-on-fungal-and-bacterial-communities-of-wheat-and-faba-bean-in-a-greenhouse-pot-experiment-differ-between-plant-species-and-compartment
#6
Sandra Granzow, Kristin Kaiser, Bernd Wemheuer, Birgit Pfeiffer, Rolf Daniel, Stefan Vidal, Franziska Wemheuer
Many bacteria and fungi in the plant rhizosphere and endosphere are beneficial to plant nutrient acquisition, health, and growth. Although playing essential roles in ecosystem functioning, our knowledge about the effects of multiple cropping regimes on the plant microbiome and their interactions is still limited. Here, we designed a pot experiment simulating different cropping regimes. For this purpose, wheat and faba bean plants were grown under controlled greenhouse conditions in monocultures and in two intercropping regimes: row and mixed intercropping...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28605851/temperature-modulates-agnp-impacts-on-microbial-decomposer-activity
#7
Daniela Batista, Cláudia Pascoal, Fernanda Cássio
Silver nanoparticles (AgNP)s can have toxic effects on aquatic species and compromise important ecosystem processes. AgNP impacts have been the focus of much research, but their effects under different environmental contexts, such as the increase in global temperature are difficult to predict. The aim of this study was to evaluate the interactive effects of AgNPs and temperature on the activity and diversity of microbial decomposers of plant litter in streams. Litter-associated microbial communities were exposed in microcosms to increased concentrations of AgNPs (50 to 75000μgL(-1)) and AgNO3 (5 to 7500μgL(-1)) and kept for 21days at 10°C, 16°C and 23°C...
June 7, 2017: Science of the Total Environment
https://www.readbyqxmd.com/read/28602402/growth-media-affect-the-volatilome-and-antimicrobial-activity-against-phytophthora-infestans-in-four-lysobacter-type-strains
#8
Valentina Lazazzara, Michele Perazzolli, Ilaria Pertot, Franco Biasioli, Gerardo Puopolo, Luca Cappellin
Bacterial volatile organic compounds (VOCs) play important ecological roles in soil microbial interactions. Lysobacter spp. are key determinants of soil suppressiveness against phytopathogens and the production of non-volatile antimicrobial metabolites has been extensively characterised. However, the chemical composition and antagonistic properties of the Lysobacter volatilome have been poorly investigated. In this work, VOC emission profiles of four Lysobacter type strains grown on a sugar-rich and a protein-rich medium were analysed using solid-phase microextraction gas chromatography-mass spectrometry and proton transfer reaction-time of flight-mass spectrometry...
August 2017: Microbiological Research
https://www.readbyqxmd.com/read/28588430/gut-microbial-diversity-in-health-and-disease-experience-of-healthy-indian-subjects-and-colon-carcinoma-and-inflammatory-bowel-disease-patients
#9
V Deepak Bamola, Arnab Ghosh, Raj Kishor Kapardar, Banwari Lal, Simrita Cheema, Priyangshu Sarma, Rama Chaudhry
Background: The intestinal microbiota, through complex interactions with the gut mucosa, play a key role in the pathogenesis of colon carcinoma and inflammatory bowel disease (IBD). The disease condition and dietary habits both influence gut microbial diversity. Objective: The aim of this study was to assess the gut microbial profile of healthy subjects and patients with colon carcinoma and IBD. Healthy subjects included 'Indian vegetarians/lactovegetarians', who eat plant produce, milk and milk products, and 'Indian non-vegetarians', who eat plant produce, milk and milk products, certain meats and fish, and the eggs of certain birds and fish...
2017: Microbial Ecology in Health and Disease
https://www.readbyqxmd.com/read/28585451/a-three-way-transcriptomic-interaction-study-of-a-biocontrol-agent-clonostachys-rosea-a-fungal-pathogen-helminthosporium-solani-and-a-potato-host-solanum-tuberosum
#10
Erik Lysøe, Merete W Dees, May Bente Brurberg
Helminthosporium solani causes silver scurf, which affects the quality of potato. The biocontrol agent Clonostachys rosea greatly limited the severity of silver scurf symptoms and amount of H. solani genomic DNA in laboratory experiments. Transcriptomic analysis during interaction showed that H. solani gene expression was highly reduced when coinoculated with the biocontrol agent C. rosea, whereas gene expression of C. rosea was clearly boosted as a response to the pathogen. The most notable upregulated C. rosea genes were those encoding proteins involved in cellular response to oxidative stress, proteases, G-protein signaling, and the methyltransferase LaeA...
June 6, 2017: Molecular Plant-microbe Interactions: MPMI
https://www.readbyqxmd.com/read/28573726/effect-of-curry-leaf-and-clove-bud-essential-oils-on-textural-and-oxidative-stability-of-chill-stored-sutchi-catfish-fillets
#11
P K Binsi, George Ninan, C N Ravishankar
Effect of coating with curry leaf and clove essential oils (EO) on oxidative and textural stability of sutchi catfish fillets were evaluated during chilled storage. The changes in parameters associated with textural and lipid degradation was also evaluated to ascertain the interactive effect of polyphenols with muscle proteins. Further, the results were compared against vacuum and conventional polyethylene packaging practices. Prior to coating, the properties of antioxidants were evaluated in vitro based on total phenolic and flavonoid contents, 2, 2-diphenyl-1- picrylhydrazyl radical scavenging activity, inhibition of linoleic acid peroxidation, iron reducing power, and metal chelating ability...
June 2017: Journal of Texture Studies
https://www.readbyqxmd.com/read/28567480/soil-bacterial-community-responses-to-revegetation-of-moving-sand-dune-in-semi-arid-grassland
#12
Chengyou Cao, Ying Zhang, Zhenbo Cui, Shuwei Feng, Tingting Wang, Qing Ren
Grasslands in semi-arid Northern China are widely desertified, thus inducing the formation of a large area of moving sand lands. Revegetation of the sandy land is commonly adopted to restore degraded grasslands. The structure of the soil microbial community might dramatically change during degradation and recovery because microorganisms are one of the major drivers of ecological process through their interactions with plants and soil. Assuming that soil properties are the key determinants of the structure of soil bacterial community within the same soil type, whether the vegetation type causes the significant difference in the structure of soil bacterial community during revegetation and restoration of the degraded grasslands remains poorly understood...
May 31, 2017: Applied Microbiology and Biotechnology
https://www.readbyqxmd.com/read/28566541/establishment-and-maintenance-of-aphid-endosymbionts-after-horizontal-transfer-is-dependent-on-host-genotype
#13
Benjamin J Parker, Ailsa H C McLean, Jan Hrček, Nicole M Gerardo, H Charles J Godfray
Animal-associated microbial communities have important effects on host phenotypes. Individuals within and among species differ in the strains and species of microbes that they harbour, but how natural selection shapes the distribution and abundance of symbionts in natural populations is not well understood. Symbionts can be beneficial in certain environments but also impose costs on their hosts. Consequently, individuals that can or cannot associate with symbionts will be favoured under different ecological circumstances...
May 2017: Biology Letters
https://www.readbyqxmd.com/read/28556511/host-specific-effects-of-soil-microbial-filtrates-prevail-over-those-of-arbuscular-mycorrhizae-in-a-fragmented-landscape
#14
Camila Pizano, Scott A Mangan, James H Graham, Kaoru Kitajima
Plant-soil interactions have been shown to determine plant community composition in a wide range of environments. However, how plants distinctly interact with beneficial and detrimental organisms across mosaic landscapes containing fragmented habitats is still poorly understood. We experimentally tested feedback responses between plants and soil microbial communities from adjacent habitats across a disturbance gradient within a human-modified tropical montane landscape. In a greenhouse experiment, two components of soil microbial communities were amplified; arbuscular mycorrhizal fungi (AMF) and a filtrate excluding AMF spores from the soils of pastures (high disturbance), coffee plantations (intermediate disturbance), and forest fragments (low disturbance), using potted seedlings of 11 plant species common in these habitats (pasture grass, coffee, and 9 native species)...
May 28, 2017: Ecological Applications: a Publication of the Ecological Society of America
https://www.readbyqxmd.com/read/28555622/zooming-in-on-the-phycosphere-the-ecological-interface-for-phytoplankton-bacteria-relationships
#15
REVIEW
Justin R Seymour, Shady A Amin, Jean-Baptiste Raina, Roman Stocker
By controlling nutrient cycling and biomass production at the base of the food web, interactions between phytoplankton and bacteria represent a fundamental ecological relationship in aquatic environments. Although typically studied over large spatiotemporal scales, emerging evidence indicates that this relationship is often governed by microscale interactions played out within the region immediately surrounding individual phytoplankton cells. This microenvironment, known as the phycosphere, is the planktonic analogue of the rhizosphere in plants...
May 30, 2017: Nature Microbiology
https://www.readbyqxmd.com/read/28551744/endophytic-bacterial-and-fungal-communities-transmitted-from-cotyledons-and-germs-in-peanut-arachis-hypogaea-l-sprouts
#16
Yali Huang, Zaoyuan Kuang, Zujun Deng, Ren Zhang, Lixiang Cao
Seed-borne endophytes could be transmitted into sprouts. Whether this happened in peanuts and the difference between microbial taxa in peanut germs and cotyledons remain unknown. In this research, Illumina-based sequencing was employed to investigate the microbial taxa in peanut germs, cotyledons, and sprouts. Sulfur-oxidizing bacteria was isolated and inoculated into peanut sprouts, and then, the growth of peanut seedlings was measured. The results illustrated that diverse bacteria and fungi were detected in peanut germs, cotyledons, and sprouts...
May 27, 2017: Environmental Science and Pollution Research International
https://www.readbyqxmd.com/read/28551077/lipopolysaccharide-detection-across-the-kingdoms-of-life
#17
REVIEW
Jonathan C Kagan
Studies in recent years have uncovered a diverse set of eukaryotic receptors that recognize lipopolysaccharide (LPS), the major outer-membrane component of Gram-negative bacteria. Indeed, Toll-like receptors, G-protein-coupled receptors, integrins, receptor-like kinases, and caspases have emerged as important LPS-interacting proteins. In this review, the mammalian receptors that detect LPS are described. I highlight how no host protein is involved in all LPS responses, but a single lipid (phosphatidylinositol-4,5-bisphosphate) regulates many LPS responses, including endocytosis, phagocytosis, inflammation, and pyroptosis...
May 24, 2017: Trends in Immunology
https://www.readbyqxmd.com/read/28549371/theoretical-analysis-of-coupled-effects-of-microbe-and-root-architecture-on-methane-oxidation-in-vegetated-landfill-covers
#18
S Feng, A K Leung, C W W Ng, H W Liu
Reduction of soil moisture by plant root-water uptake could improve soil aeration for microbial aerobic methane oxidation (MAMO) in a landfill cover, but excessive soil moisture removal could suppress microbial activity due to water shortage. Existing models ignore the coupled microbe-vegetation interaction. It is thus not known whether the presence of plants is beneficial or adverse to MAMO. This study proposes a newly-improved theoretical model that couples the effects of root-water uptake and microbial activity for capturing water-gas flow and MAMO in unsaturated soils...
December 1, 2017: Science of the Total Environment
https://www.readbyqxmd.com/read/28547568/biofertilizers-and-sustainable-agriculture-exploring-arbuscular-mycorrhizal-fungi
#19
REVIEW
Nicholas O Igiehon, Olubukola O Babalola
Worldwide agricultural food production has to double in 2050 so as to feed the global increasing population while reducing dependency on conventional chemical fertilizers plus pesticides. To accomplish this objective, there is the need to explore the several mutualistic interactions between plant roots and rhizosphere microbiome. Biofertilization is the process of boosting the abundance of microorganisms such as arbuscular mycorrhizal fungi (AMF) in the natural plant rhizosphere which depicts a beneficial alternative to chemical fertilization practices...
May 25, 2017: Applied Microbiology and Biotechnology
https://www.readbyqxmd.com/read/28546829/vinasse-fertirrigation-alters-soil-resistome-dynamics-an-analysis-based-on-metagenomic-profiles
#20
Lucas P P Braga, Rafael F Alves, Marina T F Dellias, Acacio A Navarrete, Thiago O Basso, Siu M Tsai
Every year around 300 Gl of vinasse, a by-product of ethanol distillation in sugarcane mills, are flushed into more than 9 Mha of sugarcane cropland in Brazil. This practice links fermentation waste management to fertilization for plant biomass production, and it is known as fertirrigation. Here we evaluate public datasets of soil metagenomes mining for changes in antibiotic resistance genes (ARGs) of soils from sugarcane mesocosms repeatedly amended with vinasse. The metagenomes were annotated using the ResFam database...
2017: BioData Mining
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