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Anaerobic respiration

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https://www.readbyqxmd.com/read/28317859/physiological-and-transcriptional-approaches-reveal-connection-between-nitrogen-and-manganese-cycles-in-shewanella-algae-c6g3
#1
Axel Aigle, Patricia Bonin, Chantal Iobbi-Nivol, Vincent Méjean, Valérie Michotey
To explain anaerobic nitrite/nitrate production at the expense of ammonium mediated by manganese oxide (Mn(IV)) in sediment, nitrate and manganese respirations were investigated in a strain (Shewanella algae C6G3) presenting these features. In contrast to S. oneidensis MR-1, a biotic transitory nitrite accumulation at the expense of ammonium was observed in S. algae during anaerobic growth with Mn(IV) under condition of limiting electron acceptor, concomitantly, with a higher electron donor stoichiometry than expected...
March 20, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28300180/systems-level-understanding-of-ethanol-induced-stresses-and-adaptation-in-e-coli
#2
Huansheng Cao, Du Wei, Yuedong Yang, Yu Shang, Gaoyang Li, Yaoqi Zhou, Qin Ma, Ying Xu
Understanding ethanol-induced stresses and responses in biofuel-producing bacteria at systems level has significant implications in engineering more efficient biofuel producers. We present a computational study of transcriptomic and genomic data of both ethanol-stressed and ethanol-adapted E. coli cells with computationally predicated ethanol-binding proteins and experimentally identified ethanol tolerance genes. Our analysis suggests: (1) ethanol damages cell wall and membrane integrity, causing increased stresses, particularly reactive oxygen species, which damages DNA and reduces the O2 level; (2) decreased cross-membrane proton gradient from membrane damage, coupled with hypoxia, leads to reduced ATP production by aerobic respiration, driving cells to rely more on fatty acid oxidation, anaerobic respiration and fermentation for ATP production; (3) the reduced ATP generation results in substantially decreased synthesis of macromolecules; (4) ethanol can directly bind 213 proteins including transcription factors, altering their functions; (5) all these changes together induce multiple stress responses, reduced biosynthesis, cell viability and growth; and (6) ethanol-adapted E...
March 16, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28281935/operational-strategies-and-environmental-conditions-inducing-aerobic-denitritation-in-short-cut-biological-nitrogen-removal-at-side-line-treatment
#3
Dilek Erdirencelebi, Serdar Koyuncu
Factors promoting aerobic denitritation in a pilot-scale short-cut biological nitrogen removal (SBNR) process were investigated. The study implemented optimization of nitrogen removal in the anaerobic reject water (ARW) having a low organic C:N ratio ARW was produced in a large-scale municipal wastewater treatment plant (WWTP). Aerobic denitritation occurred consistently during study of a specific period of sequential batch reactor (SBR) where nitrite removal under fully aerobic conditions was obtained with a switch from oxygen to nitrite respiration, creating an aerobic (high oxidation-reduction potential) condition...
March 10, 2017: Journal of Environmental Science and Health. Part A, Toxic/hazardous Substances & Environmental Engineering
https://www.readbyqxmd.com/read/28273571/detoxification-of-1-1-2-trichloroethane-to-ethene-in-a-bioreactor-co-culture-of-dehalogenimonas-and-dehalococcoides-mccartyi-strains
#4
Siti Hatijah Mortan, Lucía Martín-González, Teresa Vicent, Gloria Caminal, Ivonne Nijenhuis, Lorenz Adrian, Ernest Marco-Urrea
1,1,2-Trichloroethane (1,1,2-TCA) is a non-flammable organic solvent and common environmental contaminant in groundwater. Organohalide-respiring bacteria are key microorganisms to remediate 1,1,2-TCA because they can gain metabolic energy during its dechlorination under anaerobic conditions. However, all current isolates produce hazardous end products such as vinyl chloride, monochloroethane or 1,2-dichloroethane that accumulate in the medium. Here, we constructed a syntrophic co-culture of Dehalogenimonas and Dehalococcoides mccartyi strains to achieve complete detoxification of 1,1,2-TCA to ethene...
February 27, 2017: Journal of Hazardous Materials
https://www.readbyqxmd.com/read/28265262/genomic-analysis-of-caldithrix-abyssi-the-thermophilic-anaerobic-bacterium-of-the-novel-bacterial-phylum-calditrichaeota
#5
Ilya V Kublanov, Olga M Sigalova, Sergey N Gavrilov, Alexander V Lebedinsky, Christian Rinke, Olga Kovaleva, Nikolai A Chernyh, Natalia Ivanova, Chris Daum, T B K Reddy, Hans-Peter Klenk, Stefan Spring, Markus Göker, Oleg N Reva, Margarita L Miroshnichenko, Nikos C Kyrpides, Tanja Woyke, Mikhail S Gelfand, Elizaveta A Bonch-Osmolovskaya
The genome of Caldithrix abyssi, the first cultivated representative of a phylum-level bacterial lineage, was sequenced within the framework of Genomic Encyclopedia of Bacteria and Archaea (GEBA) project. The genomic analysis revealed mechanisms allowing this anaerobic bacterium to ferment peptides or to implement nitrate reduction with acetate or molecular hydrogen as electron donors. The genome encoded five different [NiFe]- and [FeFe]-hydrogenases, one of which, group 1 [NiFe]-hydrogenase, is presumably involved in lithoheterotrophic growth, three other produce H2 during fermentation, and one is apparently bidirectional...
2017: Frontiers in Microbiology
https://www.readbyqxmd.com/read/28258136/azoarcus-anaerobius-1-3-dihydroxybenzene-resorcinol-anaerobic-degradation-pathway-is-controlled-by-the-coordinated-activity-of-two-enhancer-binding-proteins
#6
Daniel Pacheco-Sánchez, Águeda Molina-Fuentes, Patricia Marín, Javier-I Medina-Bellver, Óscar González-López, Silvia Marqués
The anaerobic resorcinol degradation pathway in A. anaerobius is unique in that it uses an oxidative rather than a reductive strategy to overcome the aromatic ring stability in degradation of this compound, in a process that is dependent on nitrate respiration. We show that the pathway is organized in five transcriptional units, three of which are inducible by the presence of the substrate. Three σ(54)-dependent promoters located upstream from the three operons coding for the main pathway enzymes were identified, which shared a similar structure with conserved upstream activating sequences (UASs) located at 103 to 111 bp from the transcription start site...
March 3, 2017: Applied and Environmental Microbiology
https://www.readbyqxmd.com/read/28229521/microbial-potential-for-carbon-and-nutrient-cycling-in-a-geogenic-supercritical-carbon-dioxide-reservoir
#7
Adam J E Freedman, BoonFei Tan, Janelle R Thompson
Microorganisms catalyze carbon cycling and biogeochemical reactions in the deep subsurface and thus may be expected to influence the fate of injected supercritical (sc) CO2 following geological carbon sequestration (GCS). We hypothesized that natural subsurface scCO2 reservoirs, which serve as analogs for the long-term fate of sequestered scCO2 , harbor a "deep carbonated biosphere" with carbon cycling potential. We sampled subsurface fluids from scCO2 -water separators at a natural scCO2 reservoir at McElmo Dome, Colorado for analysis of 16S rRNA gene diversity and metagenome content...
February 22, 2017: Environmental Microbiology
https://www.readbyqxmd.com/read/28229216/enhanced-biotransformation-of-triclocarban-by-ochrobactrum-sp-tcc-1-under-anoxic-nitrate-respiration-conditions
#8
Hui Yun, Bin Liang, Deyong Kong, Zhiling Li, Guoshu Qi, Aijie Wang
Antimicrobial triclocarban (3,4,4'-trichlorocarbanilide, TCC) is frequently detected in soils and sediments for the widely reclaim of sewage sludge or biosolid in recent decades. This resulted from a weak removal of TCC during wastewater treatment, and most of it adsorbed onto sewage sludge. As the toxicity and persistence of TCC in the environment, the elimination of TCC from the source of output is of great importance, particularly in anoxic process. In this study, the biotransformation of TCC by a newly isolated TCC-degrading strain Ochrobactrum sp...
April 2017: Current Microbiology
https://www.readbyqxmd.com/read/28223460/mechanism-of-h2s-oxidation-by-the-dissimilatory-perchlorate-reducing-microorganism-azospira-suillum-ps
#9
Misha G Mehta-Kolte, Dana Loutey, Ouwei Wang, Matthew D Youngblut, Christopher G Hubbard, Kelly M Wetmore, Mark E Conrad, John D Coates
The genetic and biochemical basis of perchlorate-dependent H2S oxidation (PSOX) was investigated in the dissimilatory perchlorate-reducing microorganism (DPRM) Azospira suillum PS (PS). Previously, it was shown that all known DPRMs innately oxidize H2S, producing elemental sulfur (S(o)). Although the process involving PSOX is thermodynamically favorable (ΔG°' = -206 kJ ⋅ mol(-1) H2S), the underlying biochemical and genetic mechanisms are currently unknown. Interestingly, H2S is preferentially utilized over physiological electron donors such as lactate or acetate although no growth benefit is obtained from the metabolism...
February 21, 2017: MBio
https://www.readbyqxmd.com/read/28219702/genetic-alterations-in-krebs-cycle-and-its-impact-on-cancer-pathogenesis
#10
REVIEW
Karishma Sajnani, Farhadul Islam, Robert Anthony Smith, Vinod Gopalan, Alfred King-Yin Lam
Cancer cells exhibit alterations in many cellular processes, including oxygen sensing and energy metabolism. Glycolysis in non-oxygen condition is the main energy production process in cancer rather than mitochondrial respiration as in benign cells. Genetic and epigenetic alterations of Krebs cycle enzymes favour the shift of cancer cells from oxidative phosphorylation to anaerobic glycolysis. Mutations in genes encoding aconitase, isocitrate dehydrogenase, succinate dehydrogenase, fumarate hydratase, and citrate synthase are noted in many cancers...
April 2017: Biochimie
https://www.readbyqxmd.com/read/28217926/reduction-oxidation-cycles-of-organic-matter-increase-bacterial-activity-in-the-pelagic-oxycline
#11
Maximilian P Lau, Michael Hupfer, Hans Peter Grossart
Dissolved organic matter (DOM) in aquatic ecosystems contains redox-active moieties, which are prone to oxidation and reduction reactions. Oxidized moieties feature reduction potentials Eh , so that the moieties may be used as terminal electron acceptors (TEAs) in microbial respiration with a thermodynamic energy yield between nitrate and sulfate reduction. Here, we study the response of pelagic freshwater bacteria to exposure to native DOM with varying availabilities of oxidized moieties and hence redox state...
February 20, 2017: Environmental Microbiology Reports
https://www.readbyqxmd.com/read/28182951/microbial-respiration-and-formate-oxidation-as-metabolic-signatures-of-inflammation-associated-dysbiosis
#12
Elizabeth R Hughes, Maria G Winter, Breck A Duerkop, Luisella Spiga, Tatiane Furtado de Carvalho, Wenhan Zhu, Caroline C Gillis, Lisa Büttner, Madeline P Smoot, Cassie L Behrendt, Sara Cherry, Renato L Santos, Lora V Hooper, Sebastian E Winter
Intestinal inflammation is frequently associated with an alteration of the gut microbiota, termed dysbiosis, which is characterized by a reduced abundance of obligate anaerobic bacteria and an expansion of facultative Proteobacteria such as commensal E. coli. The mechanisms enabling the outgrowth of Proteobacteria during inflammation are incompletely understood. Metagenomic sequencing revealed bacterial formate oxidation and aerobic respiration to be overrepresented metabolic pathways in a chemically induced murine model of colitis...
February 8, 2017: Cell Host & Microbe
https://www.readbyqxmd.com/read/28176017/hypoxia-and-aerobic-metabolism-adaptations-of-human-endothelial-cells
#13
Agnieszka Koziel, Wieslawa Jarmuszkiewicz
The goal of our study was to assess the influence of chronic exposure to hypoxia on mitochondrial oxidative metabolism in human umbilical vein endothelial cells (EA.hy926 line) cultured for 6 days at 1% O2 tension. The hypoxia-induced effects were elucidated at the cellular and isolated mitochondria levels. Hypoxia elevated fermentation but did not change mitochondrial biogenesis or the aerobic respiratory capacity of endothelial cells. In endothelial cells, hypoxia caused a general decrease in mitochondrial respiration during carbohydrate, fatty acid, and amino acid oxidation but increased exclusively ketogenic amino acid oxidation...
February 8, 2017: Pflügers Archiv: European Journal of Physiology
https://www.readbyqxmd.com/read/28164386/a-class-c-radical-s-adenosylmethionine-methyltransferase-synthesizes-8-methylmenaquinone
#14
Sascha Hein, Oliver Klimmek, Markus Polly, Melanie Kern, Jörg Simon
The membranous quinone/quinol pool is essential to the majority of life forms and has been widely used as an important biomarker in microbial taxonomy. In the anaerobic world, the most important quinones are menaquinone (MK) and a methylated form of MK, designated methylmenaquinone (MMK), which is anticipated to serve specifically in low-potential electron transport chains involved in anaerobic respiration. However, it has remained unclear how MMK is generated. Here we show that a novel enzyme homologous to class C radical SAM methyltransferases (RSMTs) synthesizes MMK using MK as substrate...
February 6, 2017: Molecular Microbiology
https://www.readbyqxmd.com/read/28154498/reverse-methanogenesis-and-respiration-in-methanotrophic-archaea
#15
REVIEW
Peer H A Timmers, Cornelia U Welte, Jasper J Koehorst, Caroline M Plugge, Mike S M Jetten, Alfons J M Stams
Anaerobic oxidation of methane (AOM) is catalyzed by anaerobic methane-oxidizing archaea (ANME) via a reverse and modified methanogenesis pathway. Methanogens can also reverse the methanogenesis pathway to oxidize methane, but only during net methane production (i.e., "trace methane oxidation"). In turn, ANME can produce methane, but only during net methane oxidation (i.e., enzymatic back flux). Net AOM is exergonic when coupled to an external electron acceptor such as sulfate (ANME-1, ANME-2abc, and ANME-3), nitrate (ANME-2d), or metal (oxides)...
2017: Archaea: An International Microbiological Journal
https://www.readbyqxmd.com/read/28152601/quantitative-proteomics-charts-the-landscape-of-salmonella-carbon-metabolism-within-host-epithelial-cells
#16
Yanhua Liu, Kaiwen Yu, Fan Zhou, Tao Ding, Yufei Yang, Mo Hu, Xiaoyun Liu
We performed a proteomic survey of Salmonella enterica serovar Typhimurium during infection of host epithelial cells. Our data reveal substantial metabolic reshuffling of Salmonella in the host in addition to severe degeneration of bacterial flagella and chemotaxis systems. The large-scale quantitative data allowed us to chart an overview of intracellular Salmonella carbon metabolism. Notably, we found preferential utilization of glycolysis, the pentose phosphate pathway, mixed acid fermentation, and nucleotide metabolism...
February 3, 2017: Journal of Proteome Research
https://www.readbyqxmd.com/read/28139713/thicker-three-dimensional-tissue-from-a-symbiotic-recycling-system-combining-mammalian-cells-and-algae
#17
Yuji Haraguchi, Yuki Kagawa, Katsuhisa Sakaguchi, Katsuhisa Matsuura, Tatsuya Shimizu, Teruo Okano
In this paper, we report an in vitro co-culture system that combines mammalian cells and algae, Chlorococcum littorale, to create a three-dimensional (3-D) tissue. While the C2C12 mouse myoblasts and rat cardiac cells consumed oxygen actively, intense oxygen production was accounted for by the algae even in the co-culture system. Although cell metabolism within thicker cardiac cell-layered tissues showed anaerobic respiration, the introduction of innovative co-cultivation partially changed the metabolism to aerobic respiration...
January 31, 2017: Scientific Reports
https://www.readbyqxmd.com/read/28138101/significance-of-a-post-translational-modification-of-the-pila-protein-of-geobacter-sulfurreducens-for-surface-attachment-biofilm-formation-and-growth-on-insoluble-extracellular-electron-acceptors
#18
Lubna V Richter, Ashley E Franks, Robert M Weis, Steven J Sandler
Geobacter sulfurreducens, an anaerobic metal-reducing bacterium, possesses type IV pili. These pili are intrinsic structural elements in biofilm formation and together with a number of c-type cytochromes are thought to serve as conductive nanowires enabling long-range electron transfer (ET) to metal oxides and graphite anodes. Here, we report that a post-translational modification of a non-conserved amino acid residue within the PilA protein, the structural subunit of the type IV pili, is crucial for growth on insoluble extracellular electron acceptors...
January 30, 2017: Journal of Bacteriology
https://www.readbyqxmd.com/read/28126048/dehalogenimonas-formicexedens-sp-nov-a-chlorinated-alkane-respiring-bacterium-isolated-from-contaminated-groundwater
#19
Trent A Key, Kimberly S Bowman, Imchang Lee, Jongsik Chun, Milton da Costa, Luciana Albuquerque, Fred A Rainey, William M Moe
A strictly anaerobic, Gram-stain-negative, non-spore-forming bacterium designated NSZ-14T, isolated from contaminated groundwater in Louisiana (USA), was characterized using a polyphasic approach. Strain NSZ-14T reductively dehalogenated a variety of polychlorinated aliphatic alkanes, producing ethene from 1,2-dichloroethane, propene from 1,2-dichloropropane, a mixture of cis- and trans-1,2-dichloroethene from 1,1,2,2-tetrachloroethane, vinyl chloride from 1,1,2-trichloroethane, and allyl chloride (3-chloro-1-propene) from 1,2,3-trichloropropane...
January 23, 2017: International Journal of Systematic and Evolutionary Microbiology
https://www.readbyqxmd.com/read/28108159/influence-of-silver-nanoparticles-on-benthic-oxygen-consumption-of-microbial-communities-in-freshwater-sediments-determined-by-microelectrodes
#20
Lingzhan Miao, Chao Wang, Jun Hou, Peifang Wang, Yanhui Ao, Yi Li, Yu Yao, Bowen Lv, Yangyang Yang, Guoxiang You, Yi Xu
The increased use of silver nanoparticles (AgNPs) will inevitably result in the release of these particles into aquatic environments, with sediments as a substantial sink. However, we do not know whether AgNPs present potential impacts in sediment functioning. In this study, a microcosm approach was constructed, and the potential impacts of AgNPs and PVP-coated AgNPs on oxygen consumption in freshwater sediments (collected from Taihu Lake) were determined using oxygen microelectrodes. To our knowledge, this is the first time that microelectrodes have been used to estimate the impacts of AgNPs in sediments...
January 18, 2017: Environmental Pollution
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